+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /opt/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/plink-1.07nb1/work.log + su pbulk -c '"$@"' make /opt/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/plink-1.07nb1/work.log ===> Building for plink-1.07nb1 g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c plink.cpp g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c options.cpp g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c input.cpp g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c binput.cpp g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c tinput.cpp g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c genome.cpp g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c helper.cpp g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c stats.cpp g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c filters.cpp In file included from /opt/tools/gcc13/include/c++/13.3.0/set:62, from plink.h:22, from helper.h:23, from helper.cpp:24: /opt/tools/gcc13/include/c++/13.3.0/bits/stl_tree.h: In instantiation of 'static const _Key& std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_S_key(_Const_Link_type) [with _Key = Locus*; _Val = Locus*; _KeyOfValue = std::_Identity<Locus*>; _Compare = std::less<Locus*>; _Alloc = std::allocator<Locus*>; _Const_Link_type = const std::_Rb_tree_node<Locus*>*]': /opt/tools/gcc13/include/c++/13.3.0/bits/stl_tree.h:1952:36: required from 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_lower_bound(_Link_type, _Base_ptr, const _Key&) [with _Key = Locus*; _Val = Locus*; _KeyOfValue = std::_Identity<Locus*>; _Compare = std::less<Locus*>; _Alloc = std::allocator<Locus*>; iterator = std::_Rb_tree<Locus*, Locus*, std::_Identity<Locus*>, std::less<Locus*>, std::allocator<Locus*> >::iterator; _Link_type = std::_Rb_tree_node<Locus*>*; _Base_ptr = std::_Rb_tree_node_base*]' /opt/tools/gcc13/include/c++/13.3.0/bits/stl_tree.h:2532:36: required from 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::find(const _Key&) [with _Key = Locus*; _Val = Locus*; _KeyOfValue = std::_Identity<Locus*>; _Compare = std::less<Locus*>; _Alloc = std::allocator<Locus*>; iterator = std::_Rb_tree<Locus*, Locus*, std::_Identity<Locus*>, std::less<Locus*>, std::allocator<Locus*> >::iterator]' /opt/tools/gcc13/include/c++/13.3.0/bits/stl_set.h:797:25: required from 'std::set<_Key, _Compare, _Alloc>::iterator std::set<_Key, _Compare, _Alloc>::find(const key_type&) [with _Key = Locus*; _Compare = std::less<Locus*>; _Alloc = std::allocator<Locus*>; iterator = std::_Rb_tree<Locus*, Locus*, std::_Identity<Locus*>, std::less<Locus*>, std::allocator<Locus*> >::const_iterator; key_type = Locus*]' helper.cpp:2128:19: required from here /opt/tools/gcc13/include/c++/13.3.0/bits/stl_tree.h:772:15: error: static assertion failed: comparison object must be invocable as const 772 | is_invocable_v<const _Compare&, const _Key&, const _Key&>, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/tools/gcc13/include/c++/13.3.0/bits/stl_tree.h:772:15: note: 'std::is_invocable_v<const std::less<Locus*>&, Locus* const&, Locus* const&>' evaluates to false helper.cpp: In member function 'std::string CArgs::value(std::string)': helper.cpp:218:8: warning: control reaches end of non-void function [-Wreturn-type] 218 | error("Missing an argument for "+s); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ helper.cpp: In member function 'int CArgs::value_int(std::string)': helper.cpp:231:8: warning: control reaches end of non-void function [-Wreturn-type] 231 | error("Missing an argument for "+s); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ helper.cpp: In member function 'long unsigned int CArgs::value_lui(std::string)': helper.cpp:243:8: warning: control reaches end of non-void function [-Wreturn-type] 243 | error("Missing an argument for "+s); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ helper.cpp: In member function 'double CArgs::value_double(std::string)': helper.cpp:255:8: warning: control reaches end of non-void function [-Wreturn-type] 255 | error("Missing an argument for "+s); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ helper.cpp: In function 'int getInt(std::string, std::string)': helper.cpp:380:1: warning: control reaches end of non-void function [-Wreturn-type] 380 | } | ^ helper.cpp: In function 'long unsigned int getLongUnsignedInt(std::string, std::string)': helper.cpp:393:1: warning: control reaches end of non-void function [-Wreturn-type] 393 | } | ^ helper.cpp: In function 'double getDouble(std::string, std::string)': helper.cpp:407:1: warning: control reaches end of non-void function [-Wreturn-type] 407 | } | ^ gmake: *** [Makefile:159: helper.o] Error 1 gmake: *** Waiting for unfinished jobs.... In file included from /opt/tools/gcc13/include/c++/13.3.0/map:62, from filters.cpp:19: /opt/tools/gcc13/include/c++/13.3.0/bits/stl_tree.h: In instantiation of 'static const _Key& std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_S_key(_Const_Link_type) [with _Key = Locus*; _Val = Locus*; _KeyOfValue = std::_Identity<Locus*>; _Compare = std::less<Locus*>; _Alloc = std::allocator<Locus*>; _Const_Link_type = const std::_Rb_tree_node<Locus*>*]': /opt/tools/gcc13/include/c++/13.3.0/bits/stl_tree.h:2118:47: required from 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_unique_pos(const key_type&) [with _Key = Locus*; _Val = Locus*; _KeyOfValue = std::_Identity<Locus*>; _Compare = std::less<Locus*>; _Alloc = std::allocator<Locus*>; key_type = Locus*]' /opt/tools/gcc13/include/c++/13.3.0/bits/stl_tree.h:2171:4: required from 'std::pair<std::_Rb_tree_iterator<_Val>, bool> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique(_Arg&&) [with _Arg = Locus* const&; _Key = Locus*; _Val = Locus*; _KeyOfValue = std::_Identity<Locus*>; _Compare = std::less<Locus*>; _Alloc = std::allocator<Locus*>]' /opt/tools/gcc13/include/c++/13.3.0/bits/stl_set.h:514:25: required from 'std::pair<typename std::_Rb_tree<_Key, _Key, std::_Identity<_Tp>, _Compare, typename __gnu_cxx::__alloc_traits<_Alloc>::rebind<_Key>::other>::const_iterator, bool> std::set<_Key, _Compare, _Alloc>::insert(const value_type&) [with _Key = Locus*; _Compare = std::less<Locus*>; _Alloc = std::allocator<Locus*>; typename std::_Rb_tree<_Key, _Key, std::_Identity<_Tp>, _Compare, typename __gnu_cxx::__alloc_traits<_Alloc>::rebind<_Key>::other>::const_iterator = std::_Rb_tree<Locus*, Locus*, std::_Identity<Locus*>, std::less<Locus*>, std::allocator<Locus*> >::const_iterator; typename __gnu_cxx::__alloc_traits<_Alloc>::rebind<_Key>::other = std::allocator<Locus*>; typename __gnu_cxx::__alloc_traits<_Alloc>::rebind<_Key> = __gnu_cxx::__alloc_traits<std::allocator<Locus*>, Locus*>::rebind<Locus*>; typename _Alloc::value_type = Locus*; value_type = Locus*]' filters.cpp:1282:20: required from here /opt/tools/gcc13/include/c++/13.3.0/bits/stl_tree.h:772:15: error: static assertion failed: comparison object must be invocable as const 772 | is_invocable_v<const _Compare&, const _Key&, const _Key&>, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/tools/gcc13/include/c++/13.3.0/bits/stl_tree.h:772:15: note: 'std::is_invocable_v<const std::less<Locus*>&, Locus* const&, Locus* const&>' evaluates to false gmake: *** [Makefile:159: filters.o] Error 1 *** Error code 2 Stop. bmake[1]: stopped making "all" in /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/plink *** Error code 1 Stop. bmake: stopped making "all" in /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/plink