+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /opt/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=313 WRKLOG=/tmp/bulklog/py313-xgboost-2.1.1/work.log
+ su pbulk -c '"$@"' make /opt/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=313 WRKLOG=/tmp/bulklog/py313-xgboost-2.1.1/work.log
=> Checksum BLAKE2s OK for xgboost-2.1.1.tar.gz
=> Checksum SHA512 OK for xgboost-2.1.1.tar.gz
===> Installing dependencies for py313-xgboost-2.1.1
==========================================================================
The following variables will affect the build process of this package,
py313-xgboost-2.1.1.  Their current value is shown below:

        * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp
        * PYTHON_VERSION_DEFAULT = 312

Based on these variables, the following variables have been set:

        * BLAS_INCLUDES = -I/opt/pkg/include/netlib
        * BLAS_LIBS = -lblas
        * BLAS_PC = blas
        * BLAS_TYPE = netlib
        * CBLAS_LIBS = -lcblas -lblas
        * CBLAS_PC = cblas
        * LAPACKE_LIBS = -llapacke -llapack -lblas
        * LAPACKE_PC = lapacke
        * LAPACK_LIBS = -llapack -lblas
        * LAPACK_PC = lapack
        * PYPACKAGE = python313

You may want to abort the process now with CTRL-C and change the value
of variables in the first group before continuing.  Be sure to run
`/opt/pkg/bin/bmake clean' after the changes.
==========================================================================
=> Tool dependency py313-hatchling>=1.12.1: found py313-hatchling-1.26.3
=> Tool dependency py313-build>=0: found py313-build-1.2.2.post1
=> Tool dependency py313-installer>=0.7.0nb1: found py313-installer-0.7.0nb1
=> Tool dependency cmake>=3.18: found cmake-3.31.1
=> Tool dependency cwrappers>=20150314: found cwrappers-20220403
=> Tool dependency checkperms>=1.1: found checkperms-1.12
=> Full dependency py313-scipy-[0-9]*: found py313-scipy-1.14.1
=> Full dependency py313-numpy>=1.20.3nb1: found py313-numpy-2.1.3
=> Full dependency blas>=3.9.0: found blas-3.12.0
=> Full dependency cblas>=3.9.0: found cblas-3.12.0
=> Full dependency lapack>=3.9.0: found lapack-3.12.0
=> Full dependency lapacke>=3.9.0: found lapacke-3.12.0
=> Full dependency python313>=3.13: found python313-3.13.1nb1
===> Overriding tools for py313-xgboost-2.1.1
===> Extracting for py313-xgboost-2.1.1
===> Patching for py313-xgboost-2.1.1
=> Applying pkgsrc patches for py313-xgboost-2.1.1
=> Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-xgboost/patches/patch-cpp__src_dmlc-core_CMakeLists.txt
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-xgboost/patches/patch-cpp__src_dmlc-core_CMakeLists.txt
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-cpp__src_dmlc-core_CMakeLists.txt,v 1.2 2024/01/24 22:43:20 adam Exp $
|
|Fix build.
|
|--- cpp_src/dmlc-core/CMakeLists.txt.orig	2020-02-02 00:00:00.000000000 +0000
|+++ cpp_src/dmlc-core/CMakeLists.txt
--------------------------
Patching file cpp_src/dmlc-core/CMakeLists.txt using Plan A...
Hunk #1 succeeded at 173 (offset -6 lines).
done
=> Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-xgboost/patches/patch-cpp__src_include_xgboost_collective_socket.h
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-xgboost/patches/patch-cpp__src_include_xgboost_collective_socket.h
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-cpp__src_include_xgboost_collective_socket.h,v 1.2 2024/08/04 13:05:59 adam Exp $
|
|NetBSD doesn't provide SO_DOMAIN socket option.
|
|--- cpp_src/include/xgboost/collective/socket.h.orig	2020-02-02 00:00:00.000000000 +0000
|+++ cpp_src/include/xgboost/collective/socket.h
--------------------------
Patching file cpp_src/include/xgboost/collective/socket.h using Plan A...
Hunk #1 succeeded at 282.
Hunk #2 succeeded at 316.
done
=> Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-xgboost/patches/patch-xgboost_libpath.py
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-xgboost/patches/patch-xgboost_libpath.py
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-xgboost_libpath.py,v 1.2 2024/01/19 14:36:17 adam Exp $
|
|Default to libxgboost.so when looking for dynamic library.
|
|--- xgboost/libpath.py.orig	2020-02-02 00:00:00.000000000 +0000
|+++ xgboost/libpath.py
--------------------------
Patching file xgboost/libpath.py using Plan A...
Hunk #1 succeeded at 44 (offset 3 lines).
done
===> Creating toolchain wrappers for py313-xgboost-2.1.1
===> Configuring for py313-xgboost-2.1.1
=> Checking for portability problems in extracted files