+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /opt/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=312 WRKLOG=/tmp/bulklog/haplohseq-0.1.2.2nb1/work.log + su pbulk -c '"$@"' make /opt/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=312 WRKLOG=/tmp/bulklog/haplohseq-0.1.2.2nb1/work.log => Checksum BLAKE2s OK for haplohseq-0.1.2.2-e4892945eced075a5bb98f208786cdf85eb3d82a.tar.gz => Checksum SHA512 OK for haplohseq-0.1.2.2-e4892945eced075a5bb98f208786cdf85eb3d82a.tar.gz ===> Installing dependencies for haplohseq-0.1.2.2nb1 ========================================================================== The following variables will affect the build process of this package, haplohseq-0.1.2.2nb1. Their current value is shown below: * PYTHON_VERSION_DEFAULT = 312 Based on these variables, the following variables have been set: * PYPACKAGE = python312 You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/opt/pkg/bin/bmake clean' after the changes. ========================================================================== => Tool dependency gmake>=3.81: found gmake-4.4.1 => Tool dependency pax>=20040802: found pax-20210219 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Full dependency boost-libs-1.86.*: found boost-libs-1.86.0nb3 => Full dependency boost-libs>=1.86.0: found boost-libs-1.86.0nb3 => Full dependency python312>=3.12.0: found python312-3.12.8nb1 => Build dependency boost-headers-1.86.*: found boost-headers-1.86.0 ===> Overriding tools for haplohseq-0.1.2.2nb1 ===> Extracting for haplohseq-0.1.2.2nb1 ===> Patching for haplohseq-0.1.2.2nb1 /usr/bin/sed -e "s|%%EXAMPLESDIR%%|/opt/pkg/share/examples/haplohseq|" /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/haplohseq/files/haplohseq-example.in > /home/pbulk/build/biology/haplohseq/work/haplohseq-example ===> Creating toolchain wrappers for haplohseq-0.1.2.2nb1 ===> Configuring for haplohseq-0.1.2.2nb1 => Substituting "test" in example/example_run.sh => Checking for portability problems in extracted files