+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /opt/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=310 WRKLOG=/tmp/bulklog/py310-xgboost-2.1.1/work.log + su pbulk -c '"$@"' make /opt/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=310 WRKLOG=/tmp/bulklog/py310-xgboost-2.1.1/work.log => Checksum BLAKE2s OK for xgboost-2.1.1.tar.gz => Checksum SHA512 OK for xgboost-2.1.1.tar.gz ===> Installing dependencies for py310-xgboost-2.1.1 ========================================================================== The following variables will affect the build process of this package, py310-xgboost-2.1.1. Their current value is shown below: * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp * PYTHON_VERSION_DEFAULT = 312 Based on these variables, the following variables have been set: * BLAS_INCLUDES = -I/opt/pkg/include/netlib * BLAS_LIBS = -lblas * BLAS_PC = blas * BLAS_TYPE = netlib * CBLAS_LIBS = -lcblas -lblas * CBLAS_PC = cblas * LAPACKE_LIBS = -llapacke -llapack -lblas * LAPACKE_PC = lapacke * LAPACK_LIBS = -llapack -lblas * LAPACK_PC = lapack * PYPACKAGE = python310 You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/opt/pkg/bin/bmake clean' after the changes. ========================================================================== => Tool dependency py310-hatchling>=1.12.1: found py310-hatchling-1.26.3 => Tool dependency py310-build>=0: found py310-build-1.2.2.post1 => Tool dependency py310-installer>=0.7.0nb1: found py310-installer-0.7.0nb1 => Tool dependency cmake>=3.18: found cmake-3.31.1 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Full dependency py310-scipy-[0-9]*: found py310-scipy-1.14.1 => Full dependency py310-numpy>=1.20.3nb1: found py310-numpy-2.1.3 => Full dependency blas>=3.9.0: found blas-3.12.0 => Full dependency cblas>=3.9.0: found cblas-3.12.0 => Full dependency gettext-lib>=0.22: found gettext-lib-0.22.5 => Full dependency libiconv>=1.9.1: found libiconv-1.17 => Full dependency lapack>=3.9.0: found lapack-3.12.0 => Full dependency lapacke>=3.9.0: found lapacke-3.12.0 => Full dependency python310>=3.10: found python310-3.10.16 ===> Overriding tools for py310-xgboost-2.1.1 ===> Extracting for py310-xgboost-2.1.1 ===> Patching for py310-xgboost-2.1.1 => Applying pkgsrc patches for py310-xgboost-2.1.1 => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-xgboost/patches/patch-cpp__src_dmlc-core_CMakeLists.txt => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-xgboost/patches/patch-cpp__src_dmlc-core_CMakeLists.txt Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-cpp__src_dmlc-core_CMakeLists.txt,v 1.2 2024/01/24 22:43:20 adam Exp $ | |Fix build. | |--- cpp_src/dmlc-core/CMakeLists.txt.orig 2020-02-02 00:00:00.000000000 +0000 |+++ cpp_src/dmlc-core/CMakeLists.txt -------------------------- Patching file cpp_src/dmlc-core/CMakeLists.txt using Plan A... Hunk #1 succeeded at 173 (offset -6 lines). done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-xgboost/patches/patch-cpp__src_include_xgboost_collective_socket.h => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-xgboost/patches/patch-cpp__src_include_xgboost_collective_socket.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-cpp__src_include_xgboost_collective_socket.h,v 1.2 2024/08/04 13:05:59 adam Exp $ | |NetBSD doesn't provide SO_DOMAIN socket option. | |--- cpp_src/include/xgboost/collective/socket.h.orig 2020-02-02 00:00:00.000000000 +0000 |+++ cpp_src/include/xgboost/collective/socket.h -------------------------- Patching file cpp_src/include/xgboost/collective/socket.h using Plan A... Hunk #1 succeeded at 282. Hunk #2 succeeded at 316. done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-xgboost/patches/patch-xgboost_libpath.py => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-xgboost/patches/patch-xgboost_libpath.py Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-xgboost_libpath.py,v 1.2 2024/01/19 14:36:17 adam Exp $ | |Default to libxgboost.so when looking for dynamic library. | |--- xgboost/libpath.py.orig 2020-02-02 00:00:00.000000000 +0000 |+++ xgboost/libpath.py -------------------------- Patching file xgboost/libpath.py using Plan A... Hunk #1 succeeded at 44 (offset 3 lines). done ===> Creating toolchain wrappers for py310-xgboost-2.1.1 ===> Configuring for py310-xgboost-2.1.1 => Checking for portability problems in extracted files