+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /opt/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/plink-1.07nb1/work.log
+ su pbulk -c '"$@"' make /opt/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/plink-1.07nb1/work.log
=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Building for plink-1.07nb1
g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c plink.cpp
g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c options.cpp
g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c input.cpp
g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c binput.cpp
g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c tinput.cpp
g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c genome.cpp
g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c helper.cpp
In file included from /opt/tools/gcc13/include/c++/13.2.0/set:62,
from plink.h:22,
from helper.h:23,
from helper.cpp:24:
/opt/tools/gcc13/include/c++/13.2.0/bits/stl_tree.h: In instantiation of 'static const _Key& std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_S_key(_Const_Link_type) [with _Key = Locus*; _Val = Locus*; _KeyOfValue = std::_Identity<Locus*>; _Compare = std::less<Locus*>; _Alloc = std::allocator<Locus*>; _Const_Link_type = const std::_Rb_tree_node<Locus*>*]':
/opt/tools/gcc13/include/c++/13.2.0/bits/stl_tree.h:1952:36: required from 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_lower_bound(_Link_type, _Base_ptr, const _Key&) [with _Key = Locus*; _Val = Locus*; _KeyOfValue = std::_Identity<Locus*>; _Compare = std::less<Locus*>; _Alloc = std::allocator<Locus*>; iterator = std::_Rb_tree<Locus*, Locus*, std::_Identity<Locus*>, std::less<Locus*>, std::allocator<Locus*> >::iterator; _Link_type = std::_Rb_tree_node<Locus*>*; _Base_ptr = std::_Rb_tree_node_base*]'
/opt/tools/gcc13/include/c++/13.2.0/bits/stl_tree.h:2532:36: required from 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::find(const _Key&) [with _Key = Locus*; _Val = Locus*; _KeyOfValue = std::_Identity<Locus*>; _Compare = std::less<Locus*>; _Alloc = std::allocator<Locus*>; iterator = std::_Rb_tree<Locus*, Locus*, std::_Identity<Locus*>, std::less<Locus*>, std::allocator<Locus*> >::iterator]'
/opt/tools/gcc13/include/c++/13.2.0/bits/stl_set.h:797:25: required from 'std::set<_Key, _Compare, _Alloc>::iterator std::set<_Key, _Compare, _Alloc>::find(const key_type&) [with _Key = Locus*; _Compare = std::less<Locus*>; _Alloc = std::allocator<Locus*>; iterator = std::_Rb_tree<Locus*, Locus*, std::_Identity<Locus*>, std::less<Locus*>, std::allocator<Locus*> >::const_iterator; key_type = Locus*]'
helper.cpp:2128:19: required from here
/opt/tools/gcc13/include/c++/13.2.0/bits/stl_tree.h:772:15: error: static assertion failed: comparison object must be invocable as const
772 | is_invocable_v<const _Compare&, const _Key&, const _Key&>,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/opt/tools/gcc13/include/c++/13.2.0/bits/stl_tree.h:772:15: note: 'std::is_invocable_v<const std::less<Locus*>&, Locus* const&, Locus* const&>' evaluates to false
helper.cpp: In member function 'std::string CArgs::value(std::string)':
helper.cpp:218:8: warning: control reaches end of non-void function [-Wreturn-type]
218 | error("Missing an argument for "+s);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
helper.cpp: In member function 'int CArgs::value_int(std::string)':
helper.cpp:231:8: warning: control reaches end of non-void function [-Wreturn-type]
231 | error("Missing an argument for "+s);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
helper.cpp: In member function 'long unsigned int CArgs::value_lui(std::string)':
helper.cpp:243:8: warning: control reaches end of non-void function [-Wreturn-type]
243 | error("Missing an argument for "+s);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
helper.cpp: In member function 'double CArgs::value_double(std::string)':
helper.cpp:255:8: warning: control reaches end of non-void function [-Wreturn-type]
255 | error("Missing an argument for "+s);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
helper.cpp: In function 'int getInt(std::string, std::string)':
helper.cpp:380:1: warning: control reaches end of non-void function [-Wreturn-type]
380 | }
| ^
helper.cpp: In function 'long unsigned int getLongUnsignedInt(std::string, std::string)':
helper.cpp:393:1: warning: control reaches end of non-void function [-Wreturn-type]
393 | }
| ^
helper.cpp: In function 'double getDouble(std::string, std::string)':
helper.cpp:407:1: warning: control reaches end of non-void function [-Wreturn-type]
407 | }
| ^
gmake: *** [Makefile:159: helper.o] Error 1
*** Error code 2
Stop.
bmake[1]: stopped in /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/plink
*** Error code 1
Stop.
bmake: stopped in /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/plink