+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /opt/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=39 WRKLOG=/tmp/bulklog/py39-xgboost-1.7.6/work.log + su pbulk -c '"$@"' make /opt/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=39 WRKLOG=/tmp/bulklog/py39-xgboost-1.7.6/work.log => Bootstrap dependency digest>=20211023: found digest-20220214 => Checksum BLAKE2s OK for xgboost-1.7.6.tar.gz => Checksum SHA512 OK for xgboost-1.7.6.tar.gz ===> Installing dependencies for py39-xgboost-1.7.6 ========================================================================== The following variables will affect the build process of this package, py39-xgboost-1.7.6. Their current value is shown below: * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp * PYTHON_VERSION_DEFAULT = 310 Based on these variables, the following variables have been set: * BLAS_INCLUDES = -I/opt/pkg/include/netlib * BLAS_LIBS = -lblas * BLAS_TYPE = netlib * CBLAS_LIBS = -lcblas -lblas * LAPACKE_LIBS = -llapacke -llapack -lblas * LAPACK_LIBS = -llapack -lblas * PYPACKAGE = python39 You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/opt/pkg/bin/bmake clean' after the changes. ========================================================================== => Tool dependency py39-setuptools-[0-9]*: found py39-setuptools-68.0.0 => Tool dependency mktools-[0-9]*: found mktools-20220614 => Tool dependency cmake>=2.8.1nb1: found cmake-3.26.4 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Full dependency py39-scipy-[0-9]*: found py39-scipy-1.11.1 => Full dependency py39-numpy>=1.20.3nb1: found py39-numpy-1.25.1 ===> Overriding tools for py39-xgboost-1.7.6 ===> Extracting for py39-xgboost-1.7.6 ===> Patching for py39-xgboost-1.7.6 => Applying pkgsrc patches for py39-xgboost-1.7.6 => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-xgboost/patches/patch-xgboost_dmlc-core_CMakeLists.txt => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-xgboost/patches/patch-xgboost_dmlc-core_CMakeLists.txt Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-xgboost_dmlc-core_CMakeLists.txt,v 1.1 2023/06/13 17:36:58 adam Exp $ | |Fix build. | |--- xgboost/dmlc-core/CMakeLists.txt.orig 2023-02-27 12:24:23.000000000 +0000 |+++ xgboost/dmlc-core/CMakeLists.txt -------------------------- Patching file xgboost/dmlc-core/CMakeLists.txt using Plan A... Hunk #1 succeeded at 185. done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-xgboost/patches/patch-xgboost_include_xgboost_collective_socket.h => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-xgboost/patches/patch-xgboost_include_xgboost_collective_socket.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-xgboost_include_xgboost_collective_socket.h,v 1.1 2023/06/13 17:36:58 adam Exp $ | |NetBSD doesn't provide SO_DOMAIN socket option. | |--- xgboost/include/xgboost/collective/socket.h.orig 2023-06-13 16:57:30.244346651 +0000 |+++ xgboost/include/xgboost/collective/socket.h -------------------------- Patching file xgboost/include/xgboost/collective/socket.h using Plan A... Hunk #1 succeeded at 250. Hunk #2 succeeded at 284. done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-xgboost/patches/patch-xgboost_libpath.py => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-xgboost/patches/patch-xgboost_libpath.py Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-xgboost_libpath.py,v 1.1 2023/06/13 17:36:58 adam Exp $ | |Default to libxgboost.so when looking for dynamic library. | |--- xgboost/libpath.py.orig 2023-06-13 17:27:59.000000000 +0000 |+++ xgboost/libpath.py -------------------------- Patching file xgboost/libpath.py using Plan A... Hunk #1 succeeded at 43. done ===> Creating toolchain wrappers for py39-xgboost-1.7.6 ===> Configuring for py39-xgboost-1.7.6 /usr/bin/rm /home/pbulk/build/math/py-xgboost/work/xgboost-1.7.6/xgboost/include/xgboost/collective/socket.h.orig => Replacing python interpreter in xgboost/dmlc-core/tracker/dmlc-submit xgboost/dmlc-core/tracker/dmlc_tracker/launcher.py. => Replacing sh interpreter in xgboost/dmlc-core/tracker/yarn/build.sh. => Checking for portability problems in extracted files