+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /opt/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/plink-1.07nb1/work.log + su pbulk -c '"$@"' make /opt/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/plink-1.07nb1/work.log => Bootstrap dependency digest>=20211023: found digest-20220214 => Checksum BLAKE2s OK for plink-1.07-src.zip => Checksum SHA512 OK for plink-1.07-src.zip ===> Installing dependencies for plink-1.07nb1 ========================================================================== The following variables will affect the build process of this package, plink-1.07nb1. Their current value is shown below: * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp Based on these variables, the following variables have been set: * BLAS_INCLUDES (not defined) * BLAS_LIBS = -lblas * BLAS_TYPE = netlib * CBLAS_LIBS = -lcblas -lblas * LAPACKE_LIBS = -llapacke -llapack -lblas * LAPACK_LIBS = -llapack -lblas You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/opt/pkg/bin/bmake clean' after the changes. ========================================================================== => Tool dependency mktools-[0-9]*: found mktools-20220614 => Tool dependency gmake>=3.81: found gmake-4.4.1 => Tool dependency unzip-[0-9]*: found unzip-6.0nb9 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Full dependency libf2c>=20090201nb3: found libf2c-20090201nb3 => Full dependency zlib>=1.2.3: found zlib-1.2.13 => Full dependency lapack>=3.9.0nb1: found lapack-3.11.0 ===> Overriding tools for plink-1.07nb1 ===> Extracting for plink-1.07nb1 ===> Patching for plink-1.07nb1 => Applying pkgsrc patches for plink-1.07nb1 => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/plink/patches/patch-Makefile => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/plink/patches/patch-Makefile Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-Makefile,v 1.1.1.1 2012/09/14 17:46:23 asau Exp $ | |--- Makefile.orig 2009-10-10 16:00:20.000000000 +0000 |+++ Makefile -------------------------- Patching file Makefile using Plan A... Hunk #1 succeeded at 19. Hunk #2 succeeded at 59. Hunk #3 succeeded at 125. Hunk #4 succeeded at 151. done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/plink/patches/patch-elf.cpp => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/plink/patches/patch-elf.cpp Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-elf.cpp,v 1.1 2012/11/16 00:32:07 joerg Exp $ | |--- elf.cpp.orig 2012-11-15 12:41:01.000000000 +0000 |+++ elf.cpp -------------------------- Patching file elf.cpp using Plan A... Hunk #1 succeeded at 1175. Hunk #2 succeeded at 1189. done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/plink/patches/patch-idhelp.cpp => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/plink/patches/patch-idhelp.cpp Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-idhelp.cpp,v 1.1 2012/11/16 00:32:07 joerg Exp $ | |--- idhelp.cpp.orig 2012-11-15 12:44:01.000000000 +0000 |+++ idhelp.cpp -------------------------- Patching file idhelp.cpp using Plan A... Hunk #1 succeeded at 772. done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/plink/patches/patch-sets.cpp => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/plink/patches/patch-sets.cpp Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-sets.cpp,v 1.1 2012/11/16 00:32:07 joerg Exp $ | |--- sets.cpp.orig 2012-11-15 12:39:15.000000000 +0000 |+++ sets.cpp -------------------------- Patching file sets.cpp using Plan A... Hunk #1 succeeded at 768. done ===> Creating toolchain wrappers for plink-1.07nb1 ===> Configuring for plink-1.07nb1 => Checking for portability problems in extracted files