+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /opt/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=310 WRKLOG=/tmp/bulklog/bedtools-2.30.0nb1/work.log
+ su pbulk -c '"$@"' make /opt/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=310 WRKLOG=/tmp/bulklog/bedtools-2.30.0nb1/work.log
=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Building for bedtools-2.30.0nb1
Building BEDTools:
=========================================================
CXXFLAGS is [-g -Wall -O2 -std=c++11 -pipe -fno-aggressive-loop-optimizations -D_FORTIFY_SOURCE=2 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.10]
DETECTED_VERSION = v2.30.0
CURRENT_VERSION  = 
Updating version file.
  * compiling src/bedtools.cpp
  * compiling src/annotateBed/annotateMain.cpp
  * compiling src/annotateBed/annotateBed.cpp
  * compiling src/bamToBed/bamToBed.cpp
src/bamToBed/bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
src/bamToBed/bamToBed.cpp:88:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
   88 |     bool useAlignmentScore = false;
      |          ^~~~~~~~~~~~~~~~~
  * compiling src/bamToFastq/bamToFastqMain.cpp
src/bamToFastq/bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
src/bamToFastq/bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable]
   38 |     bool haveFastq2    = false;
      |          ^~~~~~~~~~
  * compiling src/bamToFastq/bamToFastq.cpp
  * compiling src/bedToBam/bedToBam.cpp
src/bedToBam/bedToBam.cpp: In function 'int bedtobam_main(int, char**)':
src/bedToBam/bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
   60 |     bool haveMapQual     = false;
      |          ^~~~~~~~~~~
  * compiling src/bedpeToBam/bedpeToBam.cpp
src/bedpeToBam/bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)':
src/bedpeToBam/bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
   61 |     bool haveMapQual     = false;
      |          ^~~~~~~~~~~
  * compiling src/bedToIgv/bedToIgv.cpp
  * compiling src/bed12ToBed6/bed12ToBed6.cpp
  * compiling src/closestFile/closestHelp.cpp
  * compiling src/closestFile/closestFile.cpp
  * compiling src/clusterBed/clusterMain.cpp
src/clusterBed/clusterMain.cpp: In function 'int cluster_main(int, char**)':
src/clusterBed/clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
   38 |     bool haveMaxDistance = false;
      |          ^~~~~~~~~~~~~~~
  * compiling src/clusterBed/clusterBed.cpp
  * compiling src/complementFile/complementHelp.cpp
  * compiling src/complementFile/complementFile.cpp
  * compiling src/coverageFile/coverageHelp.cpp
  * compiling src/coverageFile/coverageFile.cpp
  * compiling src/expand/expand.cpp
  * compiling src/fastaFromBed/fastaFromBedMain.cpp
  * compiling src/fastaFromBed/fastaFromBed.cpp
  * compiling src/flankBed/flankBedMain.cpp
  * compiling src/flankBed/flankBed.cpp
  * compiling src/genomeCoverageBed/genomeCoverageMain.cpp
  * compiling src/genomeCoverageBed/genomeCoverageBed.cpp
  * compiling src/getOverlap/getOverlap.cpp
src/getOverlap/getOverlap.cpp: In function 'int getoverlap_main(int, char**)':
src/getOverlap/getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable]
   44 |     bool haveColumns = false;
      |          ^~~~~~~~~~~
  * compiling src/groupBy/groupByHelp.cpp
  * compiling src/groupBy/groupBy.cpp
  * compiling src/intersectFile/intersectHelp.cpp
  * compiling src/intersectFile/intersectFile.cpp
  * compiling src/fisher/fisherHelp.cpp
  * compiling src/fisher/fisher.cpp
  * compiling src/fisher/kfunc.cpp
  * compiling src/jaccard/jaccardHelp.cpp
  * compiling src/jaccard/jaccard.cpp
  * compiling src/linksBed/linksMain.cpp
src/linksBed/linksMain.cpp:127:1: fatal error: opening dependency file obj/linksMain.Td: Disc quota exceeded
  127 | }
      | ^
compilation terminated.
gmake: *** [src/linksBed/Makefile.frag:4: obj/linksMain.o] Error 1
*** Error code 2

Stop.
bmake[1]: stopped in /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/bedtools
*** Error code 1

Stop.
bmake: stopped in /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/bedtools