+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /opt/pkg/bin/bmake stage-install BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/bioperl-1.7.7nb3/work.log
+ su pbulk -c '"$@"' make /opt/pkg/bin/bmake stage-install BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/bioperl-1.7.7nb3/work.log
=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Installing for bioperl-1.7.7nb3
=> Generating pre-install file lists
=> Creating installation directories
Manifying 40 pod documents
Manifying 472 pod documents
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/BioPerl.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AnnotatableI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SimpleAlign.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Range.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AnnotationI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqIO.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AnalysisI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeatureI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/FeatureHolderI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/DBLinkContainerI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SimpleAnalysisI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/RangeI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/ParameterBaseI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AnalysisResultI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/PrimarySeqI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/DescribableI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/PrimarySeq.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/UpdateableSeqI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/OntologyIO.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/LocatableSeq.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Taxon.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Species.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/PullParserI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/WebAgent.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/TreeIO.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/HandlerBaseI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqAnalysisParserI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/IdCollectionI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AnnotationCollectionI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/DasI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/IdentifiableI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AnalysisParserI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqUtils.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/LocationI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/SeqFastaSpeedFactory.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/Meta.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/EncodedSeq.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/PrimedSeq.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/PrimaryQual.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/Quality.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/SeqBuilder.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/BaseSeqProcessor.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/RichSeq.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/SequenceTrace.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/RichSeqI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/SimulatedRead.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/LargeSeq.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/LargeSeqI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/QualI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/TraceI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/SeqFactory.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/LargePrimarySeq.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/LargeLocatableSeq.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/MetaI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Seq/Meta/Array.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/xmfa.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/nexus.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/emboss.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/arp.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/maf.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/proda.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/mega.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/phylip.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/metafasta.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/msf.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/po.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/mase.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/largemultifasta.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/clustalw.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/selex.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/bl2seq.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/pfam.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/prodom.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/fasta.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/meme.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/psi.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/AlignIO/Handler/GenericAlignHandler.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/OntologyIO/obo.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/OntologyIO/simplehierarchy.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/OntologyIO/dagflat.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/OntologyIO/InterProParser.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/OntologyIO/goflat.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/OntologyIO/soflat.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/OntologyIO/Handlers/BaseSAXHandler.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/OntologyIO/Handlers/InterProHandler.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Tree/NodeNHX.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Tree/RandomFactory.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Tree/DistanceFactory.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Tree/TreeI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Tree/Tree.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Tree/Node.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Tree/TreeFunctionsI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Tree/Statistics.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Tree/NodeI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Tree/AnnotatableNode.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Tree/Compatible.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/CodonUsage/Table.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/CodonUsage/IO.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/CollectionI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Amplicon.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/SimilarityPair.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Computation.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/TypedSeqFeatureI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/AnnotationAdaptor.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Similarity.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/SubSeq.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Lite.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Collection.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/PositionProxy.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/FeaturePair.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Primer.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Generic.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Tools/Unflattener.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Tools/IDHandler.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Tools/TypeMapper.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Tools/FeatureNamer.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Gene/Poly_A_site.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Gene/GeneStructure.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Gene/ExonI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Gene/UTR.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Gene/Exon.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Gene/NC_Feature.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Gene/TranscriptI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Gene/GeneStructureI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Gene/Transcript.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Gene/Intron.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SeqFeature/Gene/Promoter.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/fasta.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/axt.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/megablast.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/waba.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/rnamotif.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/SearchWriterI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/psl.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/EventHandlerI.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/erpin.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/gmap_f9.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/sim4.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/infernal.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/blasttable.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/blast_pull.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/wise.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/IteratedSearchResultEventBuilder.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/blast.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/exonerate.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/SearchResultEventBuilder.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/cross_match.pm
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/SearchIO/FastHitEventBuilder.pm
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Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Seq::TraceI.3
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Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Tools::SeqPattern::Backtranslate.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::AlignIO::emboss.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Tree::AnnotatableNode.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::AlignIO::maf.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::SeqFeature::Gene::GeneStructure.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::DasI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Ontology::DocumentRegistry.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Location::SplitLocationI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::DBLinkContainerI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Tools::Prediction::Exon.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Annotation::Target.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Seq::RichSeqI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Tools::Signalp.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::SeqIO::genbank.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::DB::Failover.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::OntologyIO::InterProParser.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::IdCollectionI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Search::Result::BlastResult.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::SeqIO::locuslink.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Index::SwissPfam.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Factory::AnalysisI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Ontology::OntologyI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Annotation::AnnotationFactory.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Ontology::Path.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::SeqIO::phd.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Tools::Alignment::Trim.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::SeqI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Matrix::MatrixI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Matrix::PSM::IO::psiblast.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Ontology::RelationshipType.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::SeqIO::ace.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::SeqIO::swissdriver.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::SeqIO::seqxml.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Tools::TargetP.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Search::Result::ResultI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Tools::isPcr.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Matrix::PSM::SiteMatrix.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::SeqFeature::Gene::TranscriptI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Location::WidestCoordPolicy.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::DB::UpdateableSeqI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::DB::Registry.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Ontology::RelationshipI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Tools::Signalp::ExtendedSignalp.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Range.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::SeqFeature::Computation.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::DB::Flat::BDB::swiss.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Tools::Prints.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::DB::Qual.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Tools::Primer::Pair.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::AnalysisResultI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::SearchIO::Writer::HTMLResultWriter.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::SearchIO::SearchWriterI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::DB::LocationI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Tree::TreeFunctionsI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::SearchIO::Writer::HitTableWriter.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Search::HSP::FastaHSP.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Tools::EMBOSS::Palindrome.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::AnalysisI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::SeqIO::gbdriver.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Location::Simple.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Root::Exception.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::SeqFeature::Lite.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Matrix::PSM::InstanceSite.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Location::CoordinatePolicyI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Root::Root.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Tools::FootPrinter.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::DB::Flat::BDB::fasta.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Tools::SeqPattern.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::ParameterBaseI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Search::HSP::BlastPullHSP.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Tools::tRNAscanSE.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Factory::ObjectFactoryI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/share/man/man3/Bio::Factory::TreeFactoryI.3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_tree2pag
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_bioflat_index
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_search2table
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_filter_search
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_biogetseq
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_nrdb
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_mask_by_search
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_search2tribe
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_taxonomy2tree
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_unflatten_seq
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_mutate
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_find-blast-matches
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_local_taxonomydb_query
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_make_mrna_protein
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_oligo_count
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_aacomp
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_search2gff
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_seqret
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_taxid4species
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_genbank2gff3
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_sreformat
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_search2alnblocks
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_gccalc
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_fetch
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_nexus2nh
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_process_gadfly
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_revtrans-motif
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_dbsplit
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_split_seq
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_seqpart
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_process_sgd
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_seq_length
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_seqcut
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_fastam9_to_table
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_extract_feature_seq
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_mrtrans
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_index
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_seqconvert
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_translate_seq
Installing /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/bin/bp_seqretsplit
Appending installation info to /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/5.36.0/x86_64-solaris-thread-multi-64/perllocal.pod
cd /home/pbulk/build/biology/bioperl/work/BioPerl-1.7.7/examples && /opt/pkg/bin/nbpax -rw . /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/share/examples/bioperl
=> Automatic manual page handling
=> Generating post-install file lists
=> Checking file-check results for bioperl-1.7.7nb3
=> Checking for non-existent script interpreters in bioperl-1.7.7nb3
=> Checking file permissions in bioperl-1.7.7nb3
warning: /home/pbulk/build/biology/bioperl/work/.destdir/opt/pkg/lib/perl5/vendor_perl/5.36.0/Bio/Tools/Run/Phylo/PhyloBase.pm: executable bit is set on non-executable file.
0 errors and 1 warnings.
=> Checking for missing run-time search paths in bioperl-1.7.7nb3
=> Checking for work-directory references in bioperl-1.7.7nb3