+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /opt/pkg/bin/bmake stage-install BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=39 WRKLOG=/tmp/bulklog/stacks-2.60/work.log
+ su pbulk -c '"$@"' make /opt/pkg/bin/bmake stage-install BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=39 WRKLOG=/tmp/bulklog/stacks-2.60/work.log
=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Installing for stacks-2.60
=> Generating pre-install file lists
Making install in htslib
 config/install-sh -c -d '/home/pbulk/build/biology/stacks/work/.destdir/opt/pkg/bin'
  /opt/pkg/bin/bsdinstall -c -s -o pbulk -g pbulk -m 755 ustacks cstacks sstacks process_radtags process_shortreads kmer_filter clone_filter populations phasedstacks tsv2bam gstacks '/home/pbulk/build/biology/stacks/work/.destdir/opt/pkg/bin'
 config/install-sh -c -d '/home/pbulk/build/biology/stacks/work/.destdir/opt/pkg/bin'
 /opt/pkg/bin/bsdinstall -c -o pbulk -g pbulk -m 755 scripts/denovo_map.pl scripts/ref_map.pl scripts/stacks-integrate-alignments scripts/stacks-dist-extract scripts/stacks-gdb scripts/stacks-samtools-tview scripts/stacks-count-reads-per-sample-per-locus scripts/stacks-hist2d-loci-samples-coverage '/home/pbulk/build/biology/stacks/work/.destdir/opt/pkg/bin'
/opt/pkg/bin/bmake  install-data-hook
sed -e 's,_VERSION_,2.60,' -e 's,_BINDIR_,/opt/pkg/bin/,g' -e 's,_PKGDATADIR_,/opt/pkg/share/stacks/,g' /home/pbulk/build/biology/stacks/work/.destdir/opt/pkg/bin/denovo_map.pl > /home/pbulk/build/biology/stacks/work/.destdir/opt/pkg/bin/denovo_map.pl.subst
mv /home/pbulk/build/biology/stacks/work/.destdir/opt/pkg/bin/denovo_map.pl.subst /home/pbulk/build/biology/stacks/work/.destdir/opt/pkg/bin/denovo_map.pl
chmod +x /home/pbulk/build/biology/stacks/work/.destdir/opt/pkg/bin/denovo_map.pl
sed -e 's,_VERSION_,2.60,' -e 's,_BINDIR_,/opt/pkg/bin/,g' -e 's,_PKGDATADIR_,/opt/pkg/share/stacks/,g' /home/pbulk/build/biology/stacks/work/.destdir/opt/pkg/bin/ref_map.pl > /home/pbulk/build/biology/stacks/work/.destdir/opt/pkg/bin/ref_map.pl.subst
mv /home/pbulk/build/biology/stacks/work/.destdir/opt/pkg/bin/ref_map.pl.subst /home/pbulk/build/biology/stacks/work/.destdir/opt/pkg/bin/ref_map.pl
chmod +x /home/pbulk/build/biology/stacks/work/.destdir/opt/pkg/bin/ref_map.pl
sed -i.bkp -e 's,_VERSION_,2.60,' /home/pbulk/build/biology/stacks/work/.destdir/opt/pkg/bin/stacks-integrate-alignments
sed: illegal option -- i
usage:	sed [-aEn] script [file ...]
	sed [-aEn] [-e script] ... [-f script_file] ... [file ...]
*** Error code 1

Stop.
bmake[3]: stopped in /home/pbulk/build/biology/stacks/work/stacks-2.60
*** Error code 1

Stop.
bmake[2]: stopped in /home/pbulk/build/biology/stacks/work/stacks-2.60
*** Error code 1

Stop.
bmake[1]: stopped in /home/pbulk/build/biology/stacks/work/stacks-2.60
*** Error code 1

Stop.
bmake: stopped in /home/pbulk/build/biology/stacks/work/stacks-2.60
*** Error code 1

Stop.
bmake[1]: stopped in /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/stacks
*** Error code 1

Stop.
bmake: stopped in /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/stacks