+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /opt/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/minimap2-2.24/work.log
+ su pbulk -c '"$@"' make /opt/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/minimap2-2.24/work.log
=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Building for minimap2-2.24
gcc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC main.c -o main.o
gcc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC kthread.c -o kthread.o
gcc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC kalloc.c -o kalloc.o
gcc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC misc.c -o misc.o
gcc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC bseq.c -o bseq.o
gcc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC sketch.c -o sketch.o
gcc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC sdust.c -o sdust.o
gcc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC options.c -o options.o
gcc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC index.c -o index.o
gcc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC lchain.c -o lchain.o
gcc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC align.c -o align.o
gcc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC hit.c -o hit.o
hit.c: In function 'mm_gen_regs':
hit.c:74:18: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
74 | r = (mm_reg1_t*)calloc(n_u, sizeof(mm_reg1_t));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdlib.h:40,
from hit.c:2:
/usr/include/iso/stdlib_iso.h:134:14: note: in a call to allocation function 'calloc' declared here
134 | extern void *calloc(size_t, size_t);
| ^~~~~~
gcc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC seed.c -o seed.o
gcc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC map.c -o map.o
gcc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC format.c -o format.o
gcc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC pe.c -o pe.o
gcc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC esterr.c -o esterr.o
gcc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC splitidx.c -o splitidx.o
gcc -c -g -Wall -O2 -Wc++-compat -msse2 -DHAVE_KALLOC ksw2_ll_sse.c -o ksw2_ll_sse.o
gcc -c -g -Wall -O2 -Wc++-compat -msse4.1 -DHAVE_KALLOC -DKSW_CPU_DISPATCH ksw2_extz2_sse.c -o ksw2_extz2_sse41.o
gcc -c -g -Wall -O2 -Wc++-compat -msse4.1 -DHAVE_KALLOC -DKSW_CPU_DISPATCH ksw2_extd2_sse.c -o ksw2_extd2_sse41.o
gcc -c -g -Wall -O2 -Wc++-compat -msse4.1 -DHAVE_KALLOC -DKSW_CPU_DISPATCH ksw2_exts2_sse.c -o ksw2_exts2_sse41.o
gcc -c -g -Wall -O2 -Wc++-compat -msse2 -mno-sse4.1 -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY ksw2_extz2_sse.c -o ksw2_extz2_sse2.o
gcc -c -g -Wall -O2 -Wc++-compat -msse2 -mno-sse4.1 -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY ksw2_extd2_sse.c -o ksw2_extd2_sse2.o
gcc -c -g -Wall -O2 -Wc++-compat -msse2 -mno-sse4.1 -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY ksw2_exts2_sse.c -o ksw2_exts2_sse2.o
gcc -c -g -Wall -O2 -Wc++-compat -msse4.1 -DHAVE_KALLOC -DKSW_CPU_DISPATCH ksw2_dispatch.c -o ksw2_dispatch.o
ar -csru libminimap2.a kthread.o kalloc.o misc.o bseq.o sketch.o sdust.o options.o index.o lchain.o align.o hit.o seed.o map.o format.o pe.o esterr.o splitidx.o ksw2_ll_sse.o ksw2_extz2_sse41.o ksw2_extd2_sse41.o ksw2_exts2_sse41.o ksw2_extz2_sse2.o ksw2_extd2_sse2.o ksw2_exts2_sse2.o ksw2_dispatch.o
gcc -g -Wall -O2 -Wc++-compat main.o -o minimap2 -L. -lminimap2 -lm -lz -lpthread
ld: fatal: library -lz: not found
ld: fatal: file processing errors. No output written to minimap2
collect2: error: ld returned 1 exit status
gmake: *** [Makefile:48: minimap2] Error 1
*** Error code 2
Stop.
bmake[1]: stopped in /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/minimap2
*** Error code 1
Stop.
bmake: stopped in /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/minimap2