+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /opt/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=310 WRKLOG=/tmp/bulklog/py310-scipy-1.13.0/work.log
+ su pbulk -c '"$@"' make /opt/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=310 WRKLOG=/tmp/bulklog/py310-scipy-1.13.0/work.log
=> Bootstrap dependency digest>=20211023: found digest-20220214
=> Checksum BLAKE2s OK for scipy-1.13.0.tar.gz
=> Checksum SHA512 OK for scipy-1.13.0.tar.gz
===> Installing dependencies for py310-scipy-1.13.0
==========================================================================
The following variables will affect the build process of this package,
py310-scipy-1.13.0.  Their current value is shown below:

        * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp
        * PYTHON_VERSION_DEFAULT = 311

Based on these variables, the following variables have been set:

        * BLAS_INCLUDES = -I/opt/pkg/include/netlib
        * BLAS_LIBS = -lblas
        * BLAS_PC = blas
        * BLAS_TYPE = netlib
        * CBLAS_LIBS = -lcblas -lblas
        * CBLAS_PC = cblas
        * LAPACKE_LIBS = -llapacke -llapack -lblas
        * LAPACKE_PC = lapacke
        * LAPACK_LIBS = -llapack -lblas
        * LAPACK_PC = lapack
        * PYPACKAGE = python310

You may want to abort the process now with CTRL-C and change the value
of variables in the first group before continuing.  Be sure to run
`/opt/pkg/bin/bmake clean' after the changes.
==========================================================================
=> Tool dependency py310-cython>=3.0.8: found py310-cython-3.0.10
=> Tool dependency meson>=1.2.2nb1: found meson-1.4.0
=> Tool dependency py310-meson_python-[0-9]*: found py310-meson_python-0.16.0
=> Tool dependency py310-wheel-[0-9]*: found py310-wheel-0.43.0
=> Tool dependency py310-build>=0: found py310-build-1.2.1
=> Tool dependency py310-installer>=0.7.0nb1: found py310-installer-0.7.0nb1
=> Tool dependency mktools-[0-9]*: found mktools-20220614
=> Tool dependency pkgconf-[0-9]*: found pkgconf-2.2.0nb1
=> Tool dependency cwrappers>=20150314: found cwrappers-20220403
=> Tool dependency checkperms>=1.1: found checkperms-1.12
=> Build dependency py310-pybind11>=2.5.0: found py310-pybind11-2.12.0
=> Build dependency python310>=3.10: found python310-3.10.14
=> Build dependency py310-pythran>=0.10.0: found py310-pythran-0.16.0
=> Full dependency py310-pybind11>=2.12: found py310-pybind11-2.12.0
=> Full dependency py310-pythran>=0.12.0: found py310-pythran-0.16.0
=> Full dependency py310-cython>=0.12.1: found py310-cython-3.0.10
=> Full dependency fftw>=3.3.10nb1: found fftw-3.3.10nb2
=> Full dependency lapack>=3.9.0nb1: found lapack-3.12.0
=> Full dependency cblas>=3.9.1nb1: found cblas-3.12.0
=> Full dependency lapacke>=3.9.1nb2: found lapacke-3.12.0
=> Full dependency py310-numpy>=1.22.4: found py310-numpy-1.26.4
===> Overriding tools for py310-scipy-1.13.0
===> Extracting for py310-scipy-1.13.0
===> Patching for py310-scipy-1.13.0
=> Applying pkgsrc patches for py310-scipy-1.13.0
=> Verifying /data/jenkins/workspace/pkgsrc-upstream-bulktest/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-bulktest/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-scipy_spatial___ckdtree.pyx,v 1.4 2023/07/17 19:39:56 tnn Exp $
|
|Fix missing isnan/isinf.
|Build breaks on at least NetBSD-10.99.4-aarch64 without this:
|
|scipy/spatial/_ckdtree.cxx: In function 'PyObject* __pyx_pf_5scipy_7spatial_8_ckdtree_7cKDTree_16count_neighbors(__pyx_obj_5scipy_7spatial_8_ckdtree_cKDTree*, __pyx_obj_5scipy_7spatial_8_ckdtree_cKDTree*, PyObject*, __pyx_t_5numpy_float64_t, PyObject*, int)':
|scipy/spatial/_ckdtree.cxx:13392:19: error: 'isinf' was not declared in this scope; did you mean 'std::isinf'?
|
|--- scipy/spatial/_ckdtree.pyx.orig	1970-01-01 00:00:00.000000000 +0000
|+++ scipy/spatial/_ckdtree.pyx
--------------------------
Patching file scipy/spatial/_ckdtree.pyx using Plan A...
Hunk #1 succeeded at 16.
done
=> Verifying /data/jenkins/workspace/pkgsrc-upstream-bulktest/math/py-scipy/patches/patch-scipy_spatial_ckdtree_src_ckdtree__decl.h
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-bulktest/math/py-scipy/patches/patch-scipy_spatial_ckdtree_src_ckdtree__decl.h
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-scipy_spatial_ckdtree_src_ckdtree__decl.h,v 1.4 2024/04/19 19:24:25 adam Exp $
|
|Many errors like this:
|scipy/spatial/ckdtree/src/query_pairs.cxx:110:16: error: argument to '__builtin_prefetch' must be a constant integer
|
|--- scipy/spatial/ckdtree/src/ckdtree_decl.h.orig	2024-04-02 18:31:54.000000000 +0000
|+++ scipy/spatial/ckdtree/src/ckdtree_decl.h
--------------------------
Patching file scipy/spatial/ckdtree/src/ckdtree_decl.h using Plan A...
Hunk #1 succeeded at 9.
done
=> Verifying /data/jenkins/workspace/pkgsrc-upstream-bulktest/math/py-scipy/patches/patch-scipy_special_Faddeeva.hh
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-bulktest/math/py-scipy/patches/patch-scipy_special_Faddeeva.hh
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-scipy_special_Faddeeva.hh,v 1.1 2023/05/08 20:39:18 tnn Exp $
|
|Fix missing isnan/isinf.
|
|--- scipy/special/Faddeeva.hh.orig	1970-01-01 00:00:00.000000000 +0000
|+++ scipy/special/Faddeeva.hh
--------------------------
Patching file scipy/special/Faddeeva.hh using Plan A...
Hunk #1 succeeded at 28.
done
=> Verifying /data/jenkins/workspace/pkgsrc-upstream-bulktest/math/py-scipy/patches/patch-scipy_special_sf__error.c
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-bulktest/math/py-scipy/patches/patch-scipy_special_sf__error.c
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-scipy_special_sf__error.c,v 1.1 2023/05/05 14:59:25 adam Exp $
|
|Workaround for https://github.com/numpy/numpy/issues/23379
|Add hack here, because sf_error.c is compiled in both _ufuncs.so and _ufuncs_cxx.so.
|
|--- scipy/special/sf_error.c.orig	2023-05-05 14:40:42.972802223 +0000
|+++ scipy/special/sf_error.c
--------------------------
Patching file scipy/special/sf_error.c using Plan A...
Hunk #1 succeeded at 5.
done
=> Verifying /data/jenkins/workspace/pkgsrc-upstream-bulktest/math/py-scipy/patches/patch-scipy_special_special_amos_amos.h
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-bulktest/math/py-scipy/patches/patch-scipy_special_special_amos_amos.h
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-scipy_special_special_amos_amos.h,v 1.1 2024/04/19 19:24:25 adam Exp $
|
|Prefer C++ headers.
|Fix error: 'isinf' was not declared in this scope; did you mean 'std::isinf'?
|
|--- scipy/special/special/amos/amos.h.orig	2024-04-19 14:20:53.078767873 +0000
|+++ scipy/special/special/amos/amos.h
--------------------------
Patching file scipy/special/special/amos/amos.h using Plan A...
Hunk #1 succeeded at 93.
done
=> Verifying /data/jenkins/workspace/pkgsrc-upstream-bulktest/math/py-scipy/patches/patch-scipy_special_special_specfun.h
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-bulktest/math/py-scipy/patches/patch-scipy_special_special_specfun.h
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-scipy_special_special_specfun.h,v 1.1 2024/04/19 19:24:25 adam Exp $
|
|Fix error: 'isinf' was not declared in this scope; did you mean 'std::isinf'?
|
|--- scipy/special/special/specfun.h.orig	2024-04-19 14:03:19.375569416 +0000
|+++ scipy/special/special/specfun.h
--------------------------
Patching file scipy/special/special/specfun.h using Plan A...
Hunk #1 succeeded at 26.
done
=> Verifying /data/jenkins/workspace/pkgsrc-upstream-bulktest/math/py-scipy/patches/patch-scipy_special_stirling2.h
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-bulktest/math/py-scipy/patches/patch-scipy_special_stirling2.h
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-scipy_special_stirling2.h,v 1.1 2024/04/19 19:24:25 adam Exp $
|
|Prefer C++ headers.
|Fix error: 'isinf' was not declared in this scope; did you mean 'std::isinf'?
|
|--- scipy/special/stirling2.h.orig	2024-04-02 18:31:54.000000000 +0000
|+++ scipy/special/stirling2.h
--------------------------
Patching file scipy/special/stirling2.h using Plan A...
Hunk #1 succeeded at 1.
done
=> Verifying /data/jenkins/workspace/pkgsrc-upstream-bulktest/math/py-scipy/patches/patch-scipy_special_wright.hh
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-bulktest/math/py-scipy/patches/patch-scipy_special_wright.hh
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-scipy_special_wright.hh,v 1.1 2023/05/08 20:39:18 tnn Exp $
|
|Fix missing isnan/isinf.
|
|--- scipy/special/wright.hh.orig	1970-01-01 00:00:00.000000000 +0000
|+++ scipy/special/wright.hh
--------------------------
Patching file scipy/special/wright.hh using Plan A...
Hunk #1 succeeded at 2.
done
=> Verifying /data/jenkins/workspace/pkgsrc-upstream-bulktest/math/py-scipy/patches/patch-scipy_stats___unuran_meson.build
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-bulktest/math/py-scipy/patches/patch-scipy_stats___unuran_meson.build
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-scipy_stats___unuran_meson.build,v 1.1 2023/08/26 19:50:01 tnn Exp $
|
|On NetBSD/powerpc and evbarm, you can't build with _ISOC99_SOURCE defined,
|the include of <ieeefp.h> deep down in the python headers will fail
|with undefined types.
|
|--- scipy/stats/_unuran/meson.build.orig	1970-01-01 00:00:00.000000000 +0000
|+++ scipy/stats/_unuran/meson.build
--------------------------
Patching file scipy/stats/_unuran/meson.build using Plan A...
Hunk #1 succeeded at 209 (offset 5 lines).
done
===> Creating toolchain wrappers for py310-scipy-1.13.0
===> Configuring for py310-scipy-1.13.0
/usr/bin/ln -sf /opt/pkg/bin/pybind11-config-3.10 /home/pbulk/build/math/py-scipy/work/.buildlink/bin/pybind11-config
=> Fixing pythran binary name.
=> Checking for portability problems in extracted files