+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /opt/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/biolibc-tools-0.1.4.3/work.log
+ su pbulk -c '"$@"' make /opt/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/biolibc-tools-0.1.4.3/work.log
=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Building for biolibc-tools-0.1.4.3
cd /home/pbulk/build/biology/biolibc-tools/work/biolibc-tools-dfa8f2ff93779a5b54bdccf29f60c8072c73a069 && /opt/pkg/bin/bmake PREFIX=/opt/pkg depend
rm -f Makefile.depend
for file in *.c; do  gcc -isystem /opt/pkg/include -isystem /opt/pkg/include -MM ${file} >> Makefile.depend;  printf "\t\${CC} -c \${CFLAGS} ${file}\n\n" >> Makefile.depend;  done
rm -f Makefile.depend
for file in *.c; do  gcc -isystem /opt/pkg/include -isystem /opt/pkg/include -MM ${file} >> Makefile.depend;  printf "\t\${CC} -c \${CFLAGS} ${file}\n\n" >> Makefile.depend;  done
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -D_FORTIFY_SOURCE=2 -I/opt/pkg/include -DLIBEXECDIR=\"/opt/pkg/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -isystem /opt/pkg/include -isystem /opt/pkg/include fastx2tsv.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -D_FORTIFY_SOURCE=2 -I/opt/pkg/include -DLIBEXECDIR=\"/opt/pkg/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -isystem /opt/pkg/include -isystem /opt/pkg/include fastx-derep.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -D_FORTIFY_SOURCE=2 -I/opt/pkg/include -DLIBEXECDIR=\"/opt/pkg/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -isystem /opt/pkg/include -isystem /opt/pkg/include vcf-search.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -D_FORTIFY_SOURCE=2 -I/opt/pkg/include -DLIBEXECDIR=\"/opt/pkg/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -isystem /opt/pkg/include -isystem /opt/pkg/include fasta2seq.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -D_FORTIFY_SOURCE=2 -I/opt/pkg/include -DLIBEXECDIR=\"/opt/pkg/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -isystem /opt/pkg/include -isystem /opt/pkg/include find-orfs.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -D_FORTIFY_SOURCE=2 -I/opt/pkg/include -DLIBEXECDIR=\"/opt/pkg/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -isystem /opt/pkg/include -isystem /opt/pkg/include gff2bed.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -D_FORTIFY_SOURCE=2 -I/opt/pkg/include -DLIBEXECDIR=\"/opt/pkg/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -isystem /opt/pkg/include -isystem /opt/pkg/include extract-seq.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -D_FORTIFY_SOURCE=2 -I/opt/pkg/include -DLIBEXECDIR=\"/opt/pkg/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -isystem /opt/pkg/include -isystem /opt/pkg/include chrom-lens.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -D_FORTIFY_SOURCE=2 -I/opt/pkg/include -DLIBEXECDIR=\"/opt/pkg/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -isystem /opt/pkg/include -isystem /opt/pkg/include fastx-stats.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -D_FORTIFY_SOURCE=2 -I/opt/pkg/include -DLIBEXECDIR=\"/opt/pkg/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -isystem /opt/pkg/include -isystem /opt/pkg/include ensemblid2gene.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -D_FORTIFY_SOURCE=2 -I/opt/pkg/include -DLIBEXECDIR=\"/opt/pkg/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -isystem /opt/pkg/include -isystem /opt/pkg/include vcf-downsample.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -D_FORTIFY_SOURCE=2 -I/opt/pkg/include -DLIBEXECDIR=\"/opt/pkg/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -isystem /opt/pkg/include -isystem /opt/pkg/include deromanize.c
deromanize.c:17:10: fatal error: xtend/stdlib.h: No such file or directory
   17 | #include <xtend/stdlib.h>   // romantoi()
      |          ^~~~~~~~~~~~~~~~
compilation terminated.
*** [deromanize.o] Error code 1

bmake: stopped in /home/pbulk/build/biology/biolibc-tools/work/biolibc-tools-dfa8f2ff93779a5b54bdccf29f60c8072c73a069
1 error

bmake: stopped in /home/pbulk/build/biology/biolibc-tools/work/biolibc-tools-dfa8f2ff93779a5b54bdccf29f60c8072c73a069
*** Error code 2

Stop.
bmake[1]: stopped in /data/jenkins/workspace/pkgsrc-upstream-bulktest/biology/biolibc-tools
*** Error code 1

Stop.
bmake: stopped in /data/jenkins/workspace/pkgsrc-upstream-bulktest/biology/biolibc-tools