+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /opt/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/openbabel-3.1.1nb11/work.log
+ su pbulk -c '"$@"' make /opt/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/openbabel-3.1.1nb11/work.log
=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Building for openbabel-3.1.1nb11
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[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o
/home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/src/stereo/perception.cpp: In function 'void OpenBabel::StereoRefToImplicit(OpenBabel::OBMol&, OpenBabel::OBStereo::Ref)':
/home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:2973:16: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
2973 | const std::binder1st<std::equal_to<OBStereo::Ref> > equal_to_atomId = std::bind1st (equal_to<OBStereo::Ref>(), atomId);
| ^~~~~~~~~
In file included from /opt/tools/gcc10/include/c++/10.3.0/bits/stl_function.h:1392,
from /opt/tools/gcc10/include/c++/10.3.0/bits/stl_tree.h:65,
from /opt/tools/gcc10/include/c++/10.3.0/map:60,
from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/base.h:26,
from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/stereo/stereo.h:27,
from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/stereo/tetranonplanar.h:27,
from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/stereo/tetrahedral.h:27,
from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:26:
/opt/tools/gcc10/include/c++/10.3.0/backward/binders.h:108:11: note: declared here
108 | class binder1st
| ^~~~~~~~~
/home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/src/stereo/perception.cpp: In function 'void OpenBabel::ImplicitRefToStereo(OpenBabel::OBMol&, OpenBabel::OBStereo::Ref, OpenBabel::OBStereo::Ref)':
/home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:3005:16: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
3005 | const std::binder1st<std::equal_to<OBStereo::Ref> > equal_to_implicitRef = std::bind1st (equal_to<OBStereo::Ref>(), (OBStereo::Ref) OBStereo::ImplicitRef);
| ^~~~~~~~~
In file included from /opt/tools/gcc10/include/c++/10.3.0/bits/stl_function.h:1392,
from /opt/tools/gcc10/include/c++/10.3.0/bits/stl_tree.h:65,
from /opt/tools/gcc10/include/c++/10.3.0/map:60,
from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/base.h:26,
from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/stereo/stereo.h:27,
from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/stereo/tetranonplanar.h:27,
from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/stereo/tetrahedral.h:27,
from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:26:
/opt/tools/gcc10/include/c++/10.3.0/backward/binders.h:108:11: note: declared here
108 | class binder1st
| ^~~~~~~~~
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/home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/src/formats/CSRformat.cpp:192:12: warning: 'char* std::strncpy(char*, const char*, size_t)' specified bound depends on the length of the source argument [-Wstringop-overflow=]
192 | strncpy(output, input, strlen(input));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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/home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/tools/obrms.cpp: In member function 'virtual bool Matcher::MapRMSDFunctor::operator()(OpenBabel::OBIsomorphismMapper::Mapping&)':
/home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/tools/obrms.cpp:91:32: error: 'alloca' was not declared in this scope; did you mean 'valloc'?
91 | double *refcoord = (double*)alloca(sizeof(double)*N * 3);
| ^~~~~~
| valloc
*** [tools/CMakeFiles/obrms.dir/obrms.cpp.o] Error code 1
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1 error
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*** Error code 2
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*** Error code 1
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