+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /opt/local/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/ncbi-lib-20120620/work.log
+ su pbulk -c '"$@"' make /opt/local/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/ncbi-lib-20120620/work.log
WARNING: [license.mk] Every package should define a LICENSE.
===> Building for ncbi-lib-20120620
cd /home/pbulk/build/wip/ncbi-lib/work/ncbi/.. && /usr/bin/env PREFIX=/opt/local USETOOLS=no MOTIFLIB=-Wl,-R/opt/local/lib\ \ -L/opt/local/lib\ -lXm\ -lXft MOTIFBASE=/opt/local PTHREAD_CFLAGS=\ -pthread\ PTHREAD_LDFLAGS=\ -pthread PTHREAD_LIBS=-lpthread\ -lrt PTHREADBASE=/usr CC=gcc CFLAGS=-pipe\ -O2\ -msave-args\ -fno-aggressive-loop-optimizations\ -I/opt/local/include\ -I/opt/local/include/freetype2\ -I/usr/include CPPFLAGS=-I/opt/local/include\ -I/opt/local/include/freetype2\ -I/usr/include CXX=g++ CXXFLAGS=-pipe\ -O2\ -msave-args\ -fno-aggressive-loop-optimizations\ -I/opt/local/include\ -I/opt/local/include/freetype2\ -I/usr/include COMPILER_RPATH_FLAG=-Wl,-R F77=gfortran FC=gfortran FFLAGS=-O LANG=C LC_ALL=C LC_COLLATE=C LC_CTYPE=C LC_MESSAGES=C LC_MONETARY=C LC_NUMERIC=C LC_TIME=C LDFLAGS=-L/opt/local/lib\ -Wl,-R/opt/local/lib\ -liconv\ -lintl\ -L/usr/lib/amd64\ -Wl,-R/usr/lib/amd64 LINKER_RPATH_FLAG=-R PATH=/home/pbulk/build/wip/ncbi-lib/work/.cwrapper/bin:/home/pbulk/build/wip/ncbi-lib/work/.buildlink/bin:/home/pbulk/build/wip/ncbi-lib/work/.gcc/bin:/home/pbulk/build/wip/ncbi-lib/work/.tools/bin:/opt/local/bin:/sbin:/usr/sbin:/usr/bin:/opt/tools/bin:/opt/local/bin:/opt/local/bin PREFIX=/opt/local MAKELEVEL=0 CONFIG_SITE= ftp_proxy=downloads-forbidden-except-during-fetch http_proxy=downloads-forbidden-except-during-fetch https_proxy=downloads-forbidden-except-during-fetch no_proxy= PKG_SYSCONFDIR=/opt/local/etc CXXCPP=cpp HOME=/home/pbulk/build/wip/ncbi-lib/work/.home CWRAPPERS_CONFIG_DIR=/home/pbulk/build/wip/ncbi-lib/work/.cwrapper/config CPP=cpp LOCALBASE=/opt/local X11BASE=/opt/local PKGMANDIR=man PKGINFODIR=info PKGGNUDIR= MAKECONF=/dev/null OBJECT_FMT=ELF USETOOLS=no BSD_INSTALL_PROGRAM=/opt/local/bin/bsdinstall\ -c\ \ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_SCRIPT=/opt/local/bin/bsdinstall\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_LIB=/opt/local/bin/bsdinstall\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_DATA=/opt/local/bin/bsdinstall\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 644 BSD_INSTALL_MAN=/opt/local/bin/bsdinstall\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 644 BSD_INSTALL=/opt/local/bin/bsdinstall BSD_INSTALL_PROGRAM_DIR=/opt/local/bin/bsdinstall\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_SCRIPT_DIR=/opt/local/bin/bsdinstall\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_LIB_DIR=/opt/local/bin/bsdinstall\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_DATA_DIR=/opt/local/bin/bsdinstall\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_MAN_DIR=/opt/local/bin/bsdinstall\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_GAME=/opt/local/bin/bsdinstall\ -c\ \ -o\ pbulk\ -g\ pbulk\ -m\ 2555 BSD_INSTALL_GAME_DATA=/opt/local/bin/bsdinstall\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 664 BSD_INSTALL_GAME_DIR=/opt/local/bin/bsdinstall\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 775 INSTALL_INFO= MAKEINFO=/home/pbulk/build/wip/ncbi-lib/work/.tools/bin/makeinfo FLEX= BISON= ITSTOOL=/home/pbulk/build/wip/ncbi-lib/work/.tools/bin/itstool GDBUS_CODEGEN=/home/pbulk/build/wip/ncbi-lib/work/.tools/bin/gdbus-codegen PKG_CONFIG=/home/pbulk/build/wip/ncbi-lib/work/.tools/bin/pkg-config PKG_CONFIG_LIBDIR=/home/pbulk/build/wip/ncbi-lib/work/.buildlink/lib/amd64/pkgconfig:/home/pbulk/build/wip/ncbi-lib/work/.buildlink/lib/pkgconfig:/home/pbulk/build/wip/ncbi-lib/work/.buildlink/share/pkgconfig PKG_CONFIG_LOG=/home/pbulk/build/wip/ncbi-lib/work/.pkg-config.log PKG_CONFIG_PATH= DL_CFLAGS= DL_LDFLAGS= DL_LIBS= CWRAPPERS_CONFIG_DIR=/home/pbulk/build/wip/ncbi-lib/work/.cwrapper/config ncbi/make/makedis.csh
platform is solaris-gcc
SunOS pkgsrc-202108 5.11 joyent_20210826T002459Z i86pc i386 i86pc
Disabling assert().
BLAST version is 2.2.26
make CFLAGS1="-DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c " LDFLAGS1="-O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64" OTHERLIBS="-lresolv -lsocket -lrpcsvc -lnsl -lgen -lm" SHELL="/usr/bin/sh" LCL="sol" RAN="ls -l" AR="ar" CC="gcc" LIB30=libncbicn3d.a LIB28=libvibgif.a LIB4=libvibrant.a LIB20=libncbidesk.a LIB45=libddvlib.a VIBFLAG="-I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF" VIBLIBS="-Wl,-R/usr/dt/lib -Wl,-R/usr/openwin/lib -lXm -lXmu -lXt -lX11 -lXext" all
chmod -R ug+rw,o+r . ../include
./ln-if-absent ../corelib/tsprintf.h ../include
./ln-if-absent ../corelib/gifgen.h ../include
./ln-if-absent ../corelib/ncbi*.h ../include
./ln-if-absent ../corelib/tree*.h ../include
./ln-if-absent ../corelib/regex.h ../include
./ln-if-absent ../corelib/matrix.h ../include
./ln-if-absent ../corelib/binary.h ../include
./ln-if-absent ../corelib/morefile/*.h ../include
./ln-if-absent ../corelib/morefile/*.c .
./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include
./ln-if-absent ../corelib/ncbilcl.sol ../include/ncbilcl.h
./ln-if-absent ../corelib/*.c .
./ln-if-absent ../corelib/core*.h .
./ln-if-absent ../asnlib/*.h .
rm -f ../include/asn.h
mv asn.h ../include
./ln-if-absent ../asnlib/*.c .
./ln-if-absent ../connect/*.c .
./ln-if-absent ../connect/ncbi_ansi_ext.h .
./ln-if-absent ../connect/ncbi_assert.h .
./ln-if-absent ../connect/ncbi_priv.h .
./ln-if-absent ../connect/ncbi_comm.h .
./ln-if-absent ../connect/ncbi_config.h .
./ln-if-absent ../connect/ncbi_connssl.h .
./ln-if-absent ../connect/ncbi_lbsm.h .
*** Error code 1 (ignored)
./ln-if-absent ../connect/ncbi_lbsm_ipc.h .
*** Error code 1 (ignored)
./ln-if-absent ../connect/ncbi_host_infop.h .
./ln-if-absent ../connect/ncbi_server_infop.h .
./ln-if-absent ../connect/ncbi_servicep.h .
./ln-if-absent ../connect/ncbi_socketp.h .
./ln-if-absent ../connect/ncbi_dispd.h .
./ln-if-absent ../connect/ncbi_lbsmd.h .
./ln-if-absent ../connect/ncbi_local.h .
./ln-if-absent ../connect/ncbi_lb.h .
./ln-if-absent ../connect/ncbi_version.h .
./ln-if-absent ../connect/ncbi_base64.h .
./ln-if-absent ../connect/urlquery.h ../include
mkdir ../include/connect
chmod ug+rw,o+r ../include/connect
cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect
./ln-if-absent ../util/tables/*.c .
mkdir -p ../include/util/tables
cp -fp ../util/tables/*.h ../include/util/tables
./ln-if-absent ../util/creaders/*.c .
mkdir -p ../include/util/creaders
cp -fp ../util/creaders/*.h ../include/util/creaders
./ln-if-absent ../ctools/*.c .
./ln-if-absent ../ctools/*.h .
mkdir ../include/ctools
chmod ug+rw,o+r ../include/ctools
cp -fp ../ctools/*.h ../include/ctools
./ln-if-absent ../object/*.c .
./ln-if-absent ../object/*.h ../include
./ln-if-absent ../access/*.c .
./ln-if-absent ../access/*.h ../include
./ln-if-absent ../asnstat/*.h ../include
./ln-if-absent ../api/*.h ../include
./ln-if-absent ../api/*.c .
./ln-if-absent ../api/*.inc .
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../cdromlib/*.c .
./ln-if-absent ../vibrant/*.h ../include
./ln-if-absent ../vibrant/*.c .
./ln-if-absent ../desktop/*.h ../include
./ln-if-absent ../desktop/*.c .
./ln-if-absent ../biostruc/*.h ../include
./ln-if-absent ../biostruc/*.c .
./ln-if-absent ../biostruc/cdd/*.h ../include
./ln-if-absent ../biostruc/cdd/*.c .
./ln-if-absent ../biostruc/cn3d/*.h ../include
./ln-if-absent ../biostruc/cn3d/*.c .
./ln-if-absent ../tools/*.h ../include
./ln-if-absent ../tools/*.c .
./ln-if-absent ../cn3d/*.h ../include
./ln-if-absent ../cn3d/*.c .
./ln-if-absent ../gif/*.c .
./ln-if-absent ../gif/*.h ../include
./ln-if-absent ../ddv/*.h ../include
./ln-if-absent ../ddv/*.c .
./ln-if-absent ../regexp/*.c .
./ln-if-absent ../regexp/*.h ../include
./ln-if-absent ../internal/compr/*.c .
../internal/compr/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/compr/*.h ../include
../internal/compr/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/libindx/*.c .
../internal/libindx/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/libindx/*.h ../include
../internal/libindx/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/libpars/*.c .
../internal/libpars/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/libpars/*.h ../include
../internal/libpars/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/ideogram/*.c .
../internal/ideogram/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/ideogram/*.dat .
../internal/ideogram/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/ideogram/ideochr*.h ../include
../internal/ideogram/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/ideogram/ideoorgs.h .
*** Error code 1 (ignored)
./ln-if-absent ../internal/ccap/*.c .
../internal/ccap/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/ccap/*.dat .
../internal/ccap/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/ccap/*.h ../include
../internal/ccap/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ncbidraw.c ncbidrwg.c
./ln-if-absent ncbithr.c ncbithrs.c
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/id1arch/*.h ../include
./ln-if-absent ../network/id2arch/*.h ../include
mkdir -p ../include/algo/blast/core
./ln-if-absent ../algo/blast/core/*.c .
./ln-if-absent ../algo/blast/core/*.h .
./ln-if-absent ../algo/blast/core/*.inl .
cp -fp ../algo/blast/core/*.h ../include/algo/blast/core
mkdir -p ../include/algo/blast/composition_adjustment
./ln-if-absent ../algo/blast/composition_adjustment/*.c .
./ln-if-absent ../algo/blast/composition_adjustment/*.h ../include
cp -fp ../algo/blast/composition_adjustment/*.h ../include/algo/blast/composition_adjustment
mkdir -p ../include/algo/blast/api
./ln-if-absent ../algo/blast/api/*.c .
cp -fp ../algo/blast/api/*.h ../include/algo/blast/api
chmod -R ug+rw,o+r .
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbithr.c
ncbithr.c: In function 'NlmThreadCreateEx':
ncbithr.c:816:23: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
816 | thread_handle = (TNlmThread) thread_id;
| ^
ncbithr.c: In function 'NlmThreadSelf':
ncbithr.c:858:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
858 | return (TNlmThread) pthread_self();
| ^
ncbithr.c: In function 'NlmThreadJoin':
ncbithr.c:879:27: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
879 | err_code = pthread_join((pthread_t)wait_for, status);
| ^
cp -p ncbithr.o ../lib
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbimain.c
ncbimain.c:81:1: warning: return type defaults to 'int' [-Wimplicit-int]
81 | main(int argc, char *argv[])
| ^~~~
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbibs.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF wwwutils.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbierr.c
ncbierr.c: In function 'ErrMsgRoot_fopen':
ncbierr.c:955:13: warning: 'strncat' specified bound 1024 equals destination size [-Wstringop-overflow=]
955 | strncat(path,file,sizeof(path));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbienv.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbifile.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbiprop.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbimath.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbimem.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbimisc.c
ncbimisc.c: In function 'MergeStringArray':
ncbimisc.c:1269:22: warning: 'return' with no value, in function returning non-void
1269 | if (rsult == NULL) return;
| ^~~~~~
ncbimisc.c:1249:32: note: declared here
1249 | NLM_EXTERN Nlm_CharPtr LIBCALL MergeStringArray (Nlm_CharPtr PNTR local, size_t numitems)
| ^~~~~~~~~~~~~~~~
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbimsg.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbistr.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbisgml.c
ncbisgml.c: In function 'Nlm_SgmlLoadTable':
ncbisgml.c:191:5: warning: 'strncat' specified bound 80 equals destination size [-Wstringop-overflow=]
191 | strncat(buf,"sgmlbb.ent",sizeof buf);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbisgml.c: In function 'Nlm_Sgml2Ascii':
ncbisgml.c:265:33: warning: 'strncat' specified bound 100 equals destination size [-Wstringop-overflow=]
265 | strncat(bad,sgml,SGML_ERROR_MSG_LIM);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbisgml.c:284:33: warning: 'strncat' specified bound 100 equals destination size [-Wstringop-overflow=]
284 | strncat(bad,sgml,SGML_ERROR_MSG_LIM);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbisgml.c: In function 'Nlm_Sgml2AsciiLen':
ncbisgml.c:340:33: warning: 'strncat' specified bound 100 equals destination size [-Wstringop-overflow=]
340 | strncat(bad,sgml,SGML_ERROR_MSG_LIM);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbisgml.c:354:33: warning: 'strncat' specified bound 100 equals destination size [-Wstringop-overflow=]
354 | strncat(bad,sgml,SGML_ERROR_MSG_LIM);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbitime.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbilang.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asnbufo.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asndebin.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asnenbin.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asngen.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asnio.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asnlex.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asnlext.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asnout.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asnprint.c
asnprint.c: In function 'AsnPrintTreeType':
asnprint.c:2572:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
2572 | ptr = (Uint4)(atp);
| ^
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asntypes.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asngenob.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF gifgen.c
In file included from ../include/ncbi.h:59,
from gifgen.c:137:
gifgen.c: In function 'gdImageSetClip':
../include/ncbimem.h:194:21: warning: 'memcmp' specified bound 16 exceeds source size 8 [-Wstringop-overread]
194 | #define Nlm_MemCmp memcmp
../include/ncbimem.h:213:17: note: in expansion of macro 'Nlm_MemCmp'
213 | #define MemCmp Nlm_MemCmp
| ^~~~~~~~~~
gifgen.c:1850:17: note: in expansion of macro 'MemCmp'
1850 | if (clip && MemCmp(&clip, &empty_clip, sizeof(gdRect))) {
| ^~~~~~
gifgen.c:1838:45: note: source object allocated here
1838 | const gdRect *clip, gdRect *old_clip)
| ~~~~~~~~~~~~~~^~~~
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF togif.c
gcc -DNCBI_NOTHREADS_AVAIL -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbithrs.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c
regex.c: In function 're_match_2':
regex.c:3762:31: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
3762 | if ((int) old_regend[r] >= (int) regstart[r])
| ^
regex.c:3762:54: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
3762 | if ((int) old_regend[r] >= (int) regstart[r])
| ^
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
regex.c:2421:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2421 | PUSH_FAILURE_ITEM (lowest_active_reg); \
| ^~~~~~~~~~~~~~~~~
regex.c:3768:19: note: in expansion of macro 'PUSH_FAILURE_POINT'
3768 | PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
| ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
regex.c:2424:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2424 | PUSH_FAILURE_ITEM (highest_active_reg); \
| ^~~~~~~~~~~~~~~~~
regex.c:3768:19: note: in expansion of macro 'PUSH_FAILURE_POINT'
3768 | PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
| ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
regex.c:2421:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2421 | PUSH_FAILURE_ITEM (lowest_active_reg); \
| ^~~~~~~~~~~~~~~~~
regex.c:3915:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
3915 | PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
| ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
regex.c:2424:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2424 | PUSH_FAILURE_ITEM (highest_active_reg); \
| ^~~~~~~~~~~~~~~~~
regex.c:3915:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
3915 | PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
| ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
regex.c:2421:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2421 | PUSH_FAILURE_ITEM (lowest_active_reg); \
| ^~~~~~~~~~~~~~~~~
regex.c:3968:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
3968 | PUSH_FAILURE_POINT (p + mcnt, d, -2);
| ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
regex.c:2424:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2424 | PUSH_FAILURE_ITEM (highest_active_reg); \
| ^~~~~~~~~~~~~~~~~
regex.c:3968:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
3968 | PUSH_FAILURE_POINT (p + mcnt, d, -2);
| ^~~~~~~~~~~~~~~~~~
regex.c:2509:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
2509 | high_reg = (unsigned) POP_FAILURE_ITEM (); \
| ^
regex.c:4074:13: note: in expansion of macro 'POP_FAILURE_POINT'
4074 | POP_FAILURE_POINT (sdummy, pdummy,
| ^~~~~~~~~~~~~~~~~
regex.c:2512:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
2512 | low_reg = (unsigned) POP_FAILURE_ITEM (); \
| ^
regex.c:4074:13: note: in expansion of macro 'POP_FAILURE_POINT'
4074 | POP_FAILURE_POINT (sdummy, pdummy,
| ^~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
regex.c:2421:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2421 | PUSH_FAILURE_ITEM (lowest_active_reg); \
| ^~~~~~~~~~~~~~~~~
regex.c:4107:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
4107 | PUSH_FAILURE_POINT (0, 0, -2);
| ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
regex.c:2424:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2424 | PUSH_FAILURE_ITEM (highest_active_reg); \
| ^~~~~~~~~~~~~~~~~
regex.c:4107:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
4107 | PUSH_FAILURE_POINT (0, 0, -2);
| ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
regex.c:2421:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2421 | PUSH_FAILURE_ITEM (lowest_active_reg); \
| ^~~~~~~~~~~~~~~~~
regex.c:4120:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
4120 | PUSH_FAILURE_POINT (0, 0, -2);
| ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
regex.c:2424:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2424 | PUSH_FAILURE_ITEM (highest_active_reg); \
| ^~~~~~~~~~~~~~~~~
regex.c:4120:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
4120 | PUSH_FAILURE_POINT (0, 0, -2);
| ^~~~~~~~~~~~~~~~~~
regex.c:2509:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
2509 | high_reg = (unsigned) POP_FAILURE_ITEM (); \
| ^
regex.c:4288:11: note: in expansion of macro 'POP_FAILURE_POINT'
4288 | POP_FAILURE_POINT (d, p,
| ^~~~~~~~~~~~~~~~~
regex.c:2512:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
2512 | low_reg = (unsigned) POP_FAILURE_ITEM (); \
| ^
regex.c:4288:11: note: in expansion of macro 'POP_FAILURE_POINT'
4288 | POP_FAILURE_POINT (d, p,
| ^~~~~~~~~~~~~~~~~
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF tsprintf.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbiargs.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF tree.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF matrix.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_socket.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_buffer.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_types.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_core.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_core_c.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_util.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_priv.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_ansi_ext.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_connection.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_connector.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_connutil.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_file_connector.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_heapmgr.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_http_connector.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_memory_connector.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_lbsmd_stub.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_host_info.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_server_info.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_service.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_version.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_service_connector.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_ftp_connector.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_dispd.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_lb.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_local.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_socket_connector.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF urlquery.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF binary.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_sendmail.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_base64.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asn_connection.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF raw_scoremat.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF drwnflpt.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF drwnfspc.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF drwnmfls.c
rm -f libncbi.a
ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o
cp -p libncbi.a ../lib
ls -l ../lib/libncbi.a
-rw-r--r-- 1 pbulk pbulk 4602404 Nov 14 19:00 ../lib/libncbi.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objacces.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objalign.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objall.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objbibli.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objfeat.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objgen.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objloc.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objmedli.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objpub.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objres.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objscoremat.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objseq.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objblock.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objcode.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objsset.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objsub.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objprt.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objfdef.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objalignloc.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objtable.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objpubme.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objmdrs.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objproj.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objgbseq.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objtseq.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objinsdseq.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objmacro.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objent2.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ent2api.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF pmfapi.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objtax3.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF tax3api.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objegkludge.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objentgene.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objmla2.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF mla2api.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF qblastapi.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vecscnapi.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objmim.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objvalid.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF mimapi.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cddapi.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF seqport.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF sequtil.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF prtutil.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF simple.c
In file included from simple.c:69:
../include/all.h:7192: warning: "RNA_QUAL" redefined
7192 | #define RNA_QUAL &at[2231]
|
../include/all.h:5745: note: this is the location of the previous definition
5745 | #define RNA_QUAL &at[1023]
|
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF tofasta.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF tofile.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF tomedlin.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF valid.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF valapi.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF alignmgr.c
alignmgr.c: In function 'AlnMgrIndexParentSA':
alignmgr.c:1607:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
1607 | sap->saip = (Pointer)AMAlignIndexFree(amaip);
| ^
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF aliparse.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF aliread.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF alignval.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF sqnutil1.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF sqnutil2.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF sqnutil3.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF sqnutil4.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF subutil.c
subutil.c: In function 'MakeRNAFeature':
subutil.c:3639:29: warning: comparison between pointer and zero character constant [-Wpointer-compare]
3639 | if (AA_for_tRNA != '\0')
| ^~
subutil.c:3639:17: note: did you mean to dereference the pointer?
3639 | if (AA_for_tRNA != '\0')
| ^
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF edutil.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asn2ff1.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asn2ff2.c
asn2ff2.c:1358:8: warning: return type defaults to 'int' [-Wimplicit-int]
1358 | static ChoicePID(SeqIdPtr sid)
| ^~~~~~~~~
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asn2ff3.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asn2ff4.c
asn2ff4.c:1347:8: warning: return type defaults to 'int' [-Wimplicit-int]
1347 | static CmpImpFeat (ImpFeatPtr f1, ImpFeatPtr f2)
| ^~~~~~~~~~
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asn2ff5.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asn2ff6.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asn2gnb1.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asn2gnb2.c
asn2gnb2.c: In function 'IsSuccessor':
asn2gnb2.c:1697:15: warning: comparison between pointer and zero character constant [-Wpointer-compare]
1697 | while (accp != '\0' && prevp != '\0') {
| ^~
asn2gnb2.c:1697:10: note: did you mean to dereference the pointer?
1697 | while (accp != '\0' && prevp != '\0') {
| ^
asn2gnb2.c:1697:34: warning: comparison between pointer and zero character constant [-Wpointer-compare]
1697 | while (accp != '\0' && prevp != '\0') {
| ^~
asn2gnb2.c:1697:28: note: did you mean to dereference the pointer?
1697 | while (accp != '\0' && prevp != '\0') {
| ^
asn2gnb2.c: In function 'IsProjectAccn':
asn2gnb2.c:1722:38: warning: comparison between pointer and zero character constant [-Wpointer-compare]
1722 | for (ptr = acc, letters = 0; ptr != '\0' && IS_ALPHA(*ptr); ++ptr, ++letters) continue;
| ^~
asn2gnb2.c:1722:34: note: did you mean to dereference the pointer?
1722 | for (ptr = acc, letters = 0; ptr != '\0' && IS_ALPHA(*ptr); ++ptr, ++letters) continue;
| ^
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asn2gnb3.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asn2gnb4.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asn2gnb5.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asn2gnb6.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ftusrstr.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF gbfeat.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF gbftglob.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF gbparint.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF utilpars.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF utilpub.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ffprint.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF wprint.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF satutil.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF seqmgr.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objmgr.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF gather.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF accmmdbs.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF acccn3ds.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF lsqfetch.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF findrepl.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF codon.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF jzcoll.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF jzmisc.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF maputil.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF mconsist.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF macroapi.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF salpedit.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF salpstat.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF salpacc.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF salprop.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF salsap.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF salstruc.c
salstruc.c: In function 'prot_to_rputprot':
salstruc.c:734:18: warning: comparison between pointer and zero character constant [-Wpointer-compare]
734 | if (strptmp == '\0') break;
| ^~
salstruc.c:734:10: note: did you mean to dereference the pointer?
734 | if (strptmp == '\0') break;
| ^
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF salutil.c
salutil.c: In function 'NoMoreSegGapForOneAlignment':
salutil.c:3647:8: warning: implicit declaration of function 'AlnMgr2IndexSingleChildSeqAlign' [-Wimplicit-function-declaration]
3647 | AlnMgr2IndexSingleChildSeqAlign(salp); /* make sure it's dense-seg */
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF udvseq.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blocks.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF pgppop.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF samutil.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ddvcolor.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF viewmgr.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ddvcreate.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF jsavlt.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF needleman.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF txalign.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF fdlobj.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF alignmgr2.c
alignmgr2.c: In function 'AlnMgr2GetAlnLength':
alignmgr2.c:6757:20: warning: comparison between pointer and zero character constant [-Wpointer-compare]
6757 | if (saip->unaln == FALSE || fill_in == FALSE)
| ^~
alignmgr2.c:6757:8: note: did you mean to dereference the pointer?
6757 | if (saip->unaln == FALSE || fill_in == FALSE)
| ^
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF alnread.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF acerdapi.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF aceread.c
rm -f libncbiobj.a
ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o
cp -p libncbiobj.a ../lib
ls -l ../lib/libncbiobj.a
-rw-r--r-- 1 pbulk pbulk 36598816 Nov 14 19:05 ../lib/libncbiobj.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cdentrez.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cdromlib.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cdnewlib.c
cdnewlib.c: In function 'cd3_CdDocAsnOpen':
cdnewlib.c:1342:40: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
1342 | return (AsnIo*) CatastrophicFailure(1);
| ^
cdnewlib.c: In function 'UidIndex_ReadPage':
cdnewlib.c:1937:24: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
1937 | return (long*)CatastrophicFailure(1);
| ^
cdnewlib.c:1945:24: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
1945 | return (long*)CatastrophicFailure(1);
| ^
cdnewlib.c: In function 'CdDevice_FileBuildPath':
cdnewlib.c:2679:33: warning: 'strncat' specified bound 16 equals destination size [-Wstringop-overflow=]
2679 | strncat(volname,cddev->volume->volume_name,sizeof volname);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdnewlib.c: In function 'CdDevice_Init':
cdnewlib.c:2751:17: warning: 'strncat' specified bound 256 equals destination size [-Wstringop-overflow=]
2751 | strncat(fpath,cddev->inf.root,sizeof fpath);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdnewlib.c:2769:41: warning: 'strncat' specified bound 256 equals destination size [-Wstringop-overflow=]
2769 | strncat(fpath,cddev->inf.root,sizeof fpath);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF casn.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cdconfig.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objentr.c
rm -f libncbicdr.a
ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o
cp -p libncbicdr.a ../lib
ls -l ../lib/libncbicdr.a
-rw-r--r-- 1 pbulk pbulk 731388 Nov 14 19:05 ../lib/libncbicdr.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vibbutns.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vibextra.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vibfiles.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vibforms.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vibgroup.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF viblists.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vibmenus.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vibprmpt.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vibsbars.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vibslate.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vibtexts.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vibutils.c
vibutils.c: In function 'Nlm_VibMessageHook':
vibutils.c:776:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
776 | percent = (Nlm_Int4)Nlm_GetAppProperty( "VibrantMessageWidthMax" );
| ^
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vibwndws.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vibmain.c
vibmain.c:93:1: warning: return type defaults to 'int' [-Wimplicit-int]
93 | main (int argc, char *argv[], char *envp[])
| ^~~~
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbidraw.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF drawing.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF mapping.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF picture.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF viewer.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF document.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF table.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF palette.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF diagnost.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF image.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF pictur3d.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF prim3d1.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF prim3d2.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF prim3d3.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF prim3d4.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF prim3d5.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF viewer3d.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vibmouse.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF netscape.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF imagelst.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF treeview.c
treeview.c: In function 'getNodeLength':
treeview.c:177:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
177 | length= (Int4)tree_getNode(cursor, TREE_NODE_FMT_DISTANCE, &size);
| ^
treeview.c: In function 'getIconId':
treeview.c:187:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
187 | a= (Int4) tree_getNode(cursor, TREE_NODE_FMT_ICON, &size);
| ^
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF shim3d.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF odlbox.c
rm -f libvibrant.a
ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o
cp -p libvibrant.a ../lib
ls -l ../lib/libvibrant.a
-rw-r--r-- 1 pbulk pbulk 4684814 Nov 14 19:05 ../lib/libvibrant.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF accentr.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF accutils.c
rm -f libncbiacc.a
ar cru libncbiacc.a accentr.o accutils.o
cp -p libncbiacc.a ../lib
ls -l ../lib/libncbiacc.a
-rw-r--r-- 1 pbulk pbulk 266154 Nov 14 19:05 ../lib/libncbiacc.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF drawseq.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF dotmatrx.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF fea2seg.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF fstyle.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF smdlg1.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF smdlg2.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF smdlg3.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF smtools.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF styleman.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF stylemui.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF glbpic.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF layout.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF saldist.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF saled.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF salfiles.c
salfiles.c: In function 'ReadLocalAlign':
salfiles.c:1444:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
1444 | while (tmp!='\0' && !isdigit (*tmp))
| ^~
salfiles.c:1444:22: note: did you mean to dereference the pointer?
1444 | while (tmp!='\0' && !isdigit (*tmp))
| ^
salfiles.c:1446:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
1446 | if (tmp!='\0')
| ^~
salfiles.c:1446:19: note: did you mean to dereference the pointer?
1446 | if (tmp!='\0')
| ^
salfiles.c:1455:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
1455 | while (tmp!='\0' && !isdigit (*tmp))
| ^~
salfiles.c:1455:22: note: did you mean to dereference the pointer?
1455 | while (tmp!='\0' && !isdigit (*tmp))
| ^
salfiles.c:1457:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
1457 | if (tmp!='\0')
| ^~
salfiles.c:1457:19: note: did you mean to dereference the pointer?
1457 | if (tmp!='\0')
| ^
salfiles.c:1536:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
1536 | while (tmp!='\0' && !isdigit (*tmp))
| ^~
salfiles.c:1536:22: note: did you mean to dereference the pointer?
1536 | while (tmp!='\0' && !isdigit (*tmp))
| ^
salfiles.c:1538:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
1538 | if (tmp!='\0')
| ^~
salfiles.c:1538:19: note: did you mean to dereference the pointer?
1538 | if (tmp!='\0')
| ^
salfiles.c:1547:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
1547 | while (tmp!='\0' && !isdigit (*tmp))
| ^~
salfiles.c:1547:22: note: did you mean to dereference the pointer?
1547 | while (tmp!='\0' && !isdigit (*tmp))
| ^
salfiles.c:1549:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
1549 | if (tmp!='\0')
| ^~
salfiles.c:1549:19: note: did you mean to dereference the pointer?
1549 | if (tmp!='\0')
| ^
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF salpanel.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF salparam.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF salsa.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF seqfltr.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF seqgraph.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF seqgrphx.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF seqmtrx.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF seqpcc.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF seqanal.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF aacomp.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF seqscrl.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF valdlg.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vsm.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vsmfile.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vsmutil.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF udvgraph.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF udvopen.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF udvpanel.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF dotvibrant.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF dlgutil1.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF dlgutil2.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF e2trmlst.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF e2docsum.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF asn2graphic.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF medview.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF bspview.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF gbfview.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF gphview.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF gphdraw.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF gxydraw.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF gtrdraw.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF seqpanel.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ingengraph.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ingenext.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ingenwin.c
ingenwin.c: In function 'Ing_ShowComplexity':
ingenwin.c:1270:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
1270 | while ((Boolean)(slp_feat=SeqLocFindNext(slp_dust,slp_feat))){
| ^
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF macrodlg.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF biosrc.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cdrgn.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF import.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF pubdesc.c
pubdesc.c: In function 'SetPubdescImportExportItems':
pubdesc.c:2859:37: warning: comparison between pointer and integer
2859 | &&& pfp->currentPage == 1) {
| ^~
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF seqsub.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF mapgene.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF prtgene.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF salogif.c
rm -f libncbidesk.a
ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o salogif.o
cp -p libncbidesk.a ../lib
ls -l ../lib/libncbidesk.a
-rw-r--r-- 1 pbulk pbulk 17283548 Nov 14 19:07 ../lib/libncbidesk.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ddvclick.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ddvgraph.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ddvopen.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ddvpanel.c
rm -f libddvlib.a
ar cru libddvlib.a ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o
cp -p libddvlib.a ../lib
ls -l ../lib/libddvlib.a
-rw-r--r-- 1 pbulk pbulk 775044 Nov 14 19:07 ../lib/libddvlib.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF corematx.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF dvncode.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objmmdb1.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objmmdb2.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objmmdb3.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objcn3d.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF mmdbapi.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF mmdbapi1.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF mmdbapi2.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF mmdbapi3.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF mmdbapi4.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF mmdbentr.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vastsubs.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF prunebsc.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objcdd.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cddutil.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cddposutil.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF objmime.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF strucapi.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdalgs.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdatd.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdbwfi.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdcpal.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdcpll.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdcprl.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdcxei.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrddgri.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdrsmp.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdsal0.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdsalr.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdsalu.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdsgoi.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdslo0.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdslor.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdslou.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdspci.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdspea.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdspel.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdspni.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdttb0.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdttbi.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF thrdzsc.c
rm -f libncbimmdb.a
ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o
cp -p libncbimmdb.a ../lib
ls -l ../lib/libncbimmdb.a
-rw-r--r-- 1 pbulk pbulk 3929192 Nov 14 19:08 ../lib/libncbimmdb.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF csim.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF db_slist.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF dust.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_dust.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF falign.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF g_any.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF sim2.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF sim3.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF sim4.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF simutil.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF slist.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF sec.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF tfuns.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF toasn3.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF toporg.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF pobutil.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF stsutil.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF suggadj.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF suggest.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF suggslp.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blastutl.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blastool.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blastconcat.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF splutil.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF gapxdrop.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF bandalg0.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF bandalg1.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF bandalg2.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF bandalg3.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF bandalg4.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF bandalg5.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF bandalgn.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blastkar.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF actutils.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF posit.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF lookup.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF readdb.c
readdb.c: In function 'PrintDbInformationWithRID':
readdb.c:7566:14: warning: comparison between pointer and zero character constant [-Wpointer-compare]
7566 | if (rdfp == FALSE)
| ^~
readdb.c:7566:9: note: did you mean to dereference the pointer?
7566 | if (rdfp == FALSE)
| ^
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbisam.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbisort.c
ncbisort.c: In function 'SORTFracCompare':
ncbisort.c:692:12: warning: type defaults to 'int' in declaration of 'tmpa' [-Wimplicit-int]
692 | register tmpa = UCHAR(*a), tmpb = UCHAR(*b);
| ^~~~
ncbisort.c:692:30: warning: type defaults to 'int' in declaration of 'tmpb' [-Wimplicit-int]
692 | register tmpa = UCHAR(*a), tmpb = UCHAR(*b);
| ^~~~
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF salign.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF salptool.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF urkutil.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF urkpcc.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF urkptpf.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF urkepi.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF urkfltr.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF urkdust.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF urksigu.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF seg.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF urkbias.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF urkcnsrt.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF urktree.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF pseed3.c
pseed3.c: In function 'seedParallelFill':
pseed3.c:712:68: warning: iteration 100 invokes undefined behavior [-Waggressive-loop-optimizations]
712 | returnData->seedSearch->name_space[i] = seedSearch->name_space[i];
| ~~~~~~~~~~~~~~~~~~~~~~^~~
pseed3.c:711:18: note: within this loop
711 | for( i = 0; i <= BUF_SIZE; i++)
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF pattern1.c
pattern1.c:744:8: warning: return type defaults to 'int' [-Wimplicit-int]
744 | static and(Int4 *result, Int4 *a, Int4 *b, patternSearchItems *patternSearch)
| ^~~
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF impatool.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF posit2.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF mbalign.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF vecscrn.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF mblast.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF rpsutil.c
rpsutil.c: In function 'SaveUntilChar':
rpsutil.c:2190:13: warning: comparison between pointer and zero character constant [-Wpointer-compare]
2190 | if (ptr != NULLB)
| ^~
rpsutil.c:2190:9: note: did you mean to dereference the pointer?
2190 | if (ptr != NULLB)
| ^
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF kappa.c
kappa.c:2203:5: warning: initialization of 'int (*)(const BlastCompo_MatchingSequence *, const BlastCompo_SequenceRange *, BlastCompo_SequenceData *, const BlastCompo_SequenceData *, const BlastCompo_SequenceRange *, BlastCompo_SequenceData *, const BlastCompo_Alignment *, const Nlm_Boolean, const ECompoAdjustModes, const Nlm_Boolean)' {aka 'int (*)(const BlastCompo_MatchingSequence *, const BlastCompo_SequenceRange *, BlastCompo_SequenceData *, const BlastCompo_SequenceData *, const BlastCompo_SequenceRange *, BlastCompo_SequenceData *, const BlastCompo_Alignment *, const unsigned char, const ECompoAdjustModes, const unsigned char)'} from incompatible pointer type 'int (*)(const BlastCompo_MatchingSequence *, const BlastCompo_SequenceRange *, BlastCompo_SequenceData *, const BlastCompo_SequenceData *, const BlastCompo_SequenceRange *, BlastCompo_SequenceData *, const BlastCompo_Alignment *, const Nlm_Boolean)' {aka 'int (*)(const BlastCompo_MatchingSequence *, const BlastCompo_SequenceRange *, BlastCompo_SequenceData *, const BlastCompo_SequenceData *, const BlastCompo_SequenceRange *, BlastCompo_SequenceData *, const BlastCompo_Alignment *, const unsigned char)'} [-Wincompatible-pointer-types]
2203 | Kappa_SequenceGetRange,
| ^~~~~~~~~~~~~~~~~~~~~~
kappa.c:2203:5: note: (near initialization for 'redo_align_callbacks.get_range')
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF xmlblast.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF bxmlobj.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF dotseq.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF spidey.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF motif.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blfmtutl.c
rm -f libncbitool.a
ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o
cp -p libncbitool.a ../lib
ls -l ../lib/libncbitool.a
-rw-r--r-- 1 pbulk pbulk 10467718 Nov 14 19:09 ../lib/libncbitool.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF matrix_frequency_data.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF compo_mode_condition.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF composition_adjustment.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF nlm_linear_algebra.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF optimize_target_freq.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF compo_heap.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF smith_waterman.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF redo_alignment.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF unified_pvalues.c
rm -f libblastcompadj.a
ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o
cp -p libblastcompadj.a ../lib
ls -l ../lib/libblastcompadj.a
-rw-r--r-- 1 pbulk pbulk 393052 Nov 14 19:09 ../lib/libblastcompadj.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF gdfontg.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF gdfontmb.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF gdfontt.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF pictogif.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF gdfontl.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF gdfonts.c
gcc -DWIN_GIF -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbidrwg.c
rm -f libvibgif.a
ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o
cp -p libvibgif.a ../lib
ls -l ../lib/libvibgif.a
-rw-r--r-- 1 pbulk pbulk 584992 Nov 14 19:09 ../lib/libvibgif.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF algorend.c
algorend.c: In function 'Cn3D_ColSeqCons':
algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
1795 | pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i);
| ^
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cn3dmsel.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cn3dopen.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cn3dsave.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cn3dxprt.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cn3dwin.c
cn3dwin.c: In function 'Cn3D_Menus':
cn3dwin.c:2131:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2131 | (Nlm_VoidPtr) i, NULL);
| ^
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cn3dentr.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cn3dmsg.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cn3dmatn.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cn3dmodl.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cn3dshim.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cn3dmesh.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF cn3dstyl.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF seqcons.c
rm -f libncbicn3d.a
ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o cn3dstyl.o seqcons.o
cp -p libncbicn3d.a ../lib
ls -l ../lib/libncbicn3d.a
-rw-r--r-- 1 pbulk pbulk 1404578 Nov 14 19:09 ../lib/libncbicn3d.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF chartables.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF get.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF maketables.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF pcre.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF pcreposix.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF study.c
rm -f libregexp.a
ar cru libregexp.a chartables.o get.o maketables.o pcre.o pcreposix.o study.o
cp -p libregexp.a ../lib
ls -l ../lib/libregexp.a
-rw-r--r-- 1 pbulk pbulk 250554 Nov 14 19:09 ../lib/libregexp.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF aa_ungapped.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_diagnostics.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_engine.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_extend.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_filter.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_gapalign.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_hits.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_itree.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_lookup.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_message.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_options.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_seg.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_seqsrc.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_sw.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_setup.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_stat.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_traceback.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_util.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF gapinfo.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF greedy_align.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF link_hsps.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF lookup_wrap.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF na_ungapped.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_math.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF ncbi_std.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF pattern.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF phi_extend.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF phi_lookup.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF lookup_util.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_encoding.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_psi.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_psi_priv.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_kappa.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF matrix_freq_ratios.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_hspstream.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_parameters.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_posit.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF phi_gapalign.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_program.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_query_info.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_tune.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_aalookup.c
blast_aalookup.c: In function 'BlastAaLookupFinalize':
blast_aalookup.c:329:13: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
329 | calloc(lookup->backbone_size, sizeof(AaLookupBackboneCell));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbilcl.h:154,
from ../include/ncbistd.h:103,
from ../include/algo/blast/core/blast_toolkit.h:7,
from ../include/algo/blast/core/ncbi_std.h:48,
from ../include/algo/blast/core/blast_aalookup.h:36,
from blast_aalookup.c:31:
/usr/include/malloc.h:71:7: note: in a call to allocation function 'calloc' declared here
71 | void *calloc(size_t, size_t);
| ^~~~~~
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_nalookup.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_aascan.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_nascan.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_dynarray.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF split_query.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF gencode_singleton.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF index_ungapped.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF hspfilter_collector.c
rm -f libblast.a
ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o hspfilter_collector.o
cp -p libblast.a ../lib
ls -l ../lib/libblast.a
-rw-r--r-- 1 pbulk pbulk 3790164 Nov 14 19:10 ../lib/libblast.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_api.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_input.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_format.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_mtlock.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_options_api.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_prelim.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_returns.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_seq.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_seqalign.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_tabular.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF repeats_filter.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF seqsrc_multiseq.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF seqsrc_readdb.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF twoseq_api.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF dust_filter.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF blast_message_api.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF hspfilter_queue.c
rm -f libblastapi.a
ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o hspfilter_queue.o
cp -p libblastapi.a ../lib
ls -l ../lib/libblastapi.a
-rw-r--r-- 1 pbulk pbulk 1089036 Nov 14 19:10 ../lib/libblastapi.a
gcc -o asntool -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -L../lib asntool.c asncode.c ../lib/libncbi.a -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
asncode.c: In function 'AsnCodePush':
asncode.c:4053:25: warning: 'AsnCodeCleanName' accessing 100 bytes in a region of size 60 [-Wstringop-overflow=]
4053 | StringSave (AsnCodeCleanName (atp->name, buf,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4054 | CLEAN_FOR_SLOT, iter -> acip -> maxDefineLength));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asncode.c:4053:25: note: referencing argument 2 of type 'char[100]'
asncode.c:3533:1: note: in a call to function 'AsnCodeCleanName'
3533 | AsnCodeCleanName (CharPtr name, char buf[BUF_LEN], int wash_or_buf, int maxlen)
| ^~~~~~~~~~~~~~~~
asncode.c:4067:25: warning: 'AsnCodeCleanName' accessing 100 bytes in a region of size 60 [-Wstringop-overflow=]
4067 | StringSave (AsnCodeCleanName (atp->name, buf,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4068 | CLEAN_FOR_OBJ_NAME, iter -> acip -> maxDefineLength));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asncode.c:4067:25: note: referencing argument 2 of type 'char[100]'
asncode.c:3533:1: note: in a call to function 'AsnCodeCleanName'
3533 | AsnCodeCleanName (CharPtr name, char buf[BUF_LEN], int wash_or_buf, int maxlen)
| ^~~~~~~~~~~~~~~~
asncode.c:4079:22: warning: 'AsnCodeCleanName' accessing 100 bytes in a region of size 60 [-Wstringop-overflow=]
4079 | StringSave (AsnCodeCleanName (atp->name, buf,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4080 | CLEAN_FOR_ASN_TYPE, iter -> acip -> maxDefineLength));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asncode.c:4079:22: note: referencing argument 2 of type 'char[100]'
asncode.c:3533:1: note: in a call to function 'AsnCodeCleanName'
3533 | AsnCodeCleanName (CharPtr name, char buf[BUF_LEN], int wash_or_buf, int maxlen)
| ^~~~~~~~~~~~~~~~
cp -p asntool ../bin
make -f makedemo.unx CFLAGS1="-DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c " LDFLAGS1="-O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64" SHELL="/usr/bin/sh" OTHERLIBS="-lresolv -lsocket -lrpcsvc -lnsl -lgen -lm" LCL="sol" RAN="ls -l" AR="ar" CC="gcc"
./ln-if-absent ../demo/*.* .
./ln-if-absent ../regexp/test/*.* .
./ln-if-absent ../regexp/demo/*.* .
./ln-if-absent ../internal/*.* .
../internal/: No such file or directory
*** Error code 1 (ignored)
chmod -R ug+rw,o+r .
gcc -o testcore -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib testcore.c -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o makeset -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib makeset.c -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
In file included from makeset.c:9:
../include/all.h:7192: warning: "RNA_QUAL" redefined
7192 | #define RNA_QUAL &at[2231]
|
../include/all.h:5745: note: this is the location of the previous definition
5745 | #define RNA_QUAL &at[1023]
|
gcc -o getmesh -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib getmesh.c -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o indexpub -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib indexpub.c -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o getpub -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib getpub.c -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o testobj -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib testobj.c -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o seqtest -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib seqtest.c -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o dosimple -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib dosimple.c -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o asn2ff -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib asn2ff.c -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o checksub -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib checksub.c -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o asndhuff -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib asndhuff.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o entrcmd -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib entrcmd.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o errhdr -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib errhdr.c -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
errhdr.c: In function 'main':
errhdr.c:44:25: warning: 'strncat' specified bound 32 equals destination size [-Wstringop-overflow=]
44 | strncat(mod,argv[i],sizeof mod);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -o cdscan -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib cdscan.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o findspl -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib findspl.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o ncbisort -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib sortcmd.c -lncbitool -lblastcompadj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o fa2htgs -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib fa2htgs.c -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o fastacmd -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib fastacmd.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o formatdb -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib formatdb.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o formatrpsdb -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib formatrpsdb.c -lblastapi -lncbitool -lblastcompadj -lblast -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o blastall -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib blastall.c -lblastapi -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o blastpgp -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib blastpgp.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o testval -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib testval.c -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o seedtop -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib seedtop.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o makemat -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib makemat.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o copymat -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib copymat.c -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o impala -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib profiles.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o megablast -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib megablast.c -lblastapi -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o vecscreen -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib vecscreen.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o gil2bin -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib gil2bin.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o blastclust -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib blastclust.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o rpsblast -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib rpsblast.c -lblastapi -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o asn2xml -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib asn2xml.c -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o debruijn -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib debruijn.c -lblast -lblastcompadj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o asn2idx -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib asn2idx.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o sortbyquote -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib sortbyquote.c -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o subfuse -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib subfuse.c -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
gcc -o test_regexp -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib pcretest.c -lregexp
gcc -o demo_regexp -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib pcredemo.c -lregexp
gcc -o demo_regexp_grep -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib pcregrep.c -lregexp
make -f makedemo.unx CFLAGS1="-DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c " LDFLAGS1="-O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64" SHELL="/usr/bin/sh" OTHERLIBS="-lresolv -lsocket -lrpcsvc -lnsl -lgen -lm" LCL="sol" RAN="ls -l" AR="ar" CC="gcc" THREAD_OBJ=ncbithr.o THREAD_OTHERLIBS="-lpthread" blastall blastpgp seedtop megablast rpsblast blastclust
./ln-if-absent ../demo/*.* .
./ln-if-absent ../regexp/test/*.* .
./ln-if-absent ../regexp/demo/*.* .
./ln-if-absent ../internal/*.* .
../internal/: No such file or directory
*** Error code 1 (ignored)
chmod -R ug+rw,o+r .
gcc -o blastall -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib blastall.c ncbithr.o -lblastapi -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm -lpthread
gcc -o blastpgp -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib blastpgp.c ncbithr.o -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm -lpthread
gcc -o seedtop -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib seedtop.c ncbithr.o -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm -lpthread
gcc -o megablast -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib megablast.c ncbithr.o -lblastapi -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm -lpthread
gcc -o rpsblast -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib rpsblast.c ncbithr.o -lblastapi -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm -lpthread
gcc -o blastclust -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib blastclust.c ncbithr.o -lncbitool -lblastcompadj -lncbiobj -lncbi -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm -lpthread
make -f makenet.unx CFLAGS1="-DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c " LDFLAGS1="-O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64" SHELL="/usr/bin/sh" AR="ar" CC="gcc" RAN="ls -l" OTHERLIBS="-lresolv -lsocket -lrpcsvc -lnsl -lgen -lm" THREAD_OBJ=ncbithr.o THREAD_OTHERLIBS="-lpthread" NETENTREZVERSION="2.02c2ASN1SPEC6 " BLIB31=libvibnet.a VIBLIBS="-Wl,-R/usr/dt/lib -Wl,-R/usr/openwin/lib -lXm -lXmu -lXt -lX11 -lXext" OGLLIBS=" " VIBFLAG="-I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF" VIB="Psequin sbtedit Nentrez udv ddv blastcl3 taxblast idfetch bl2seq asn2gb tbl2asn gene2xml entrez2 gbseqget psiblast.REAL psiblast_cs.REAL blast.REAL blast_cs.REAL nph-viewgif.cgi wblast2.REAL wblast2_cs.REAL bl2bag.cgi "
./ln-if-absent ../connect/test/*.c .
./ln-if-absent ../network/entrez/client/*.h ../include
./ln-if-absent ../network/entrez/client/*.c .
./ln-if-absent ../network/medarch/client/*.h ../include
./ln-if-absent ../network/medarch/client/*.c .
./ln-if-absent ../network/taxonomy/client/*.h ../include
../network/taxonomy/client/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../network/taxonomy/client/*.c .
../network/taxonomy/client/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../network/taxon1/common/*.h ../include
./ln-if-absent ../network/taxon1/common/*.c .
./ln-if-absent ../network/taxon1/taxon2/*.h ../include
./ln-if-absent ../network/taxon1/taxon2/*.c .
./ln-if-absent ../network/id0arch/client/*.h ../include
../network/id0arch/client/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../network/id0arch/client/*.c .
../network/id0arch/client/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../network/id1arch/*.h ../include
./ln-if-absent ../network/id1arch/*.c .
./ln-if-absent ../network/id2arch/*.h ../include
./ln-if-absent ../network/id2arch/*.c .
./ln-if-absent ../network/spell/client/*.h ../include
./ln-if-absent ../network/spell/client/*.c .
./ln-if-absent ../network/suggest/client/*.h ../include
./ln-if-absent ../network/suggest/client/*.c .
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/blast3/client/*.c .
./ln-if-absent ../tools/taxblast.h ../include
./ln-if-absent ../tools/taxblast.c .
./ln-if-absent /*.c .
set: No match
*** Error code 1 (ignored)
./ln-if-absent ../internal/misc/*.c .
../internal/misc/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/misc/*.h ../include
../internal/misc/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/ssparse/*.c .
../internal/ssparse/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/ssparse/*.h ../include
../internal/ssparse/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/libparsn/*.c .
../internal/libparsn/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/libparsn/*.h ../include
../internal/libparsn/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/smart/smartnet/*.c .
../internal/smart/smartnet/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/smart/smartnet/*.h ../include
../internal/smart/smartnet/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/www/*.c .
../internal/www/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/www/*.h ../include
../internal/www/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/query/*.c .
../internal/query/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../internal/query/*.h ../include
../internal/query/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../network/sybutils/ctlib/*.c .
../network/sybutils/ctlib/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../network/sybutils/ctlib/*.h ../include
../network/sybutils/ctlib/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../network/sybutils/oslib/*.c .
../network/sybutils/oslib/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../network/sybutils/oslib/*.h ../include
../network/sybutils/oslib/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../network/sybutils/idloadlib/*.c .
../network/sybutils/idloadlib/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../network/sybutils/idloadlib/*.h ../include
../network/sybutils/idloadlib/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/nsclilib/*.c .
./ln-if-absent ../network/vibnet/*.c .
./ln-if-absent ../network/vibnet/*.h ../include
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../network/wwwblast/Src/*.c .
./ln-if-absent ../network/wwwblast/Src/*.h ../include
./ln-if-absent ../cdromlib/accentr.c .
./ln-if-absent ../cdromlib/accutils.c .
./ln-if-absent ../sequin/*.* .
./ln-if-absent ../demo/entrez.c .
./ln-if-absent ../demo/seqget.c .
./ln-if-absent ../demo/entrcmd.c .
./ln-if-absent ../demo/batch.c .
./ln-if-absent ../demo/qbatch.c .
./ln-if-absent ../demo/elecpcr.c .
./ln-if-absent ../demo/asn2fast.c .
./ln-if-absent ../demo/asn2asn.c .
./ln-if-absent ../demo/cleanasn.c .
./ln-if-absent ../demo/cspeedtest.c .
./ln-if-absent ../demo/sqn2agp.c .
./ln-if-absent ../demo/sugint.c .
./ln-if-absent ../demo/fetchent.c .
./ln-if-absent ../demo/udvmain.c .
./ln-if-absent ../demo/rtestval.c .
./ln-if-absent ../demo/aceread_tst.c .
./ln-if-absent ../demo/asn2ff.c .
./ln-if-absent ../demo/asn2gb.c .
./ln-if-absent ../demo/asn2fsa.c .
./ln-if-absent ../demo/asn2all.c .
./ln-if-absent ../demo/gene2xml.c .
./ln-if-absent ../demo/asnval.c .
./ln-if-absent ../demo/asndisc.c .
./ln-if-absent ../demo/asnbarval.c .
./ln-if-absent ../demo/aceread_tst.c .
./ln-if-absent ../demo/asnmacro.c .
./ln-if-absent ../demo/asnstrip.c .
./ln-if-absent ../demo/tbl2asn.c .
./ln-if-absent ../demo/raw2delt.c .
./ln-if-absent ../demo/flint.c .
./ln-if-absent ../demo/xlint.c .
./ln-if-absent ../demo/diffshift.c .
./ln-if-absent ../demo/gbseqget.c .
./ln-if-absent ../demo/insdseqget.c .
./ln-if-absent ../demo/nps2gps.c .
./ln-if-absent ../demo/testent2.c .
./ln-if-absent ../demo/trna2sap.c .
./ln-if-absent ../demo/trna2tbl.c .
./ln-if-absent ../demo/entrez2.c .
./ln-if-absent ../demo/condense.c .
./ln-if-absent ../demo/spideymain.c .
./ln-if-absent ../demo/dotmain.c .
./ln-if-absent ../demo/ingenmain.c .
./ln-if-absent ../demo/bl2seq.c .
./ln-if-absent ../demo/blastall.c .
./ln-if-absent ../demo/blast_driver.c .
./ln-if-absent ../demo/src_chk.c .
./ln-if-absent ../demo/tbl_chk.c .
./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c .
./ln-if-absent ../network/entrez/server/*.* .
../network/entrez/server/: No such file or directory
*** Error code 1 (ignored)
./ln-if-absent ../network/suggest/server/*.* .
chmod -R ug+rw,o+r .
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_lib_.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c
rm -f libnetcli.a
ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o
cp -p libnetcli.a ../lib
ls -l ../lib/libnetcli.a
-rw-r--r-- 1 pbulk pbulk 129092 Nov 14 19:11 ../lib/libnetcli.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c
rm -f libnetentr.a
ar cru libnetentr.a netentr.o netlib.o objneten.o
cp -p libnetentr.a ../lib
ls -l ../lib/libnetentr.a
-rw-r--r-- 1 pbulk pbulk 697868 Nov 14 19:11 ../lib/libnetentr.a
./ln-if-absent accentr.c Naccentr.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c
rm -f libncbiNacc.a
ar cru libncbiNacc.a Naccentr.o accutils.o
cp -p libncbiNacc.a ../lib
ls -l ../lib/libncbiNacc.a
-rw-r--r-- 1 pbulk pbulk 277922 Nov 14 19:11 ../lib/libncbiNacc.a
./ln-if-absent accentr.c Caccentr.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c
rm -f libncbiCacc.a
ar cru libncbiCacc.a Caccentr.o accutils.o
cp -p libncbiCacc.a ../lib
ls -l ../lib/libncbiCacc.a
-rw-r--r-- 1 pbulk pbulk 286754 Nov 14 19:11 ../lib/libncbiCacc.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c
rm -f libvibnet.a
ar cru libvibnet.a netcnfg.o trmlst.o docsum.o
cp -p libvibnet.a ../lib
ls -l ../lib/libvibnet.a
-rw-r--r-- 1 pbulk pbulk 753174 Nov 14 19:12 ../lib/libvibnet.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c
rm -f libncbitxc2.a
ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o
cp -p libncbitxc2.a ../lib
ls -l ../lib/libncbitxc2.a
-rw-r--r-- 1 pbulk pbulk 692012 Nov 14 19:12 ../lib/libncbitxc2.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c
rm -f libncbiid1.a
ar cru libncbiid1.a id1gen.o id1arch.o accid1.o
cp -p libncbiid1.a ../lib
ls -l ../lib/libncbiid1.a
-rw-r--r-- 1 pbulk pbulk 207366 Nov 14 19:12 ../lib/libncbiid1.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c
rm -f libnetblast.a
ar cru libnetblast.a objblst3.o netblap3.o
cp -p libnetblast.a ../lib
ls -l ../lib/libnetblast.a
-rw-r--r-- 1 pbulk pbulk 518774 Nov 14 19:12 ../lib/libnetblast.a
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c
gcc -DNDEBUG -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -I../include -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c
rm -f libncbimla.a
ar cru libncbimla.a objmla.o medarch.o medutil.o
cp -p libncbimla.a ../lib
ls -l ../lib/libncbimla.a
-rw-r--r-- 1 pbulk pbulk 318366 Nov 14 19:12 ../lib/libncbimla.a
gcc -o Psequin -I. -O -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I../include -L../lib -I/usr/openwin/include -I/usr/dt/include -L/usr/openwin/lib -L/usr/dt/lib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sequin1.c sequin2.c sequin3.c sequin4.c sequin5.c sequin6.c sequin7.c sequin8.c sequin9.c sequin10.c sequinx.c -lncbicn3d -lddvlib -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb -lncbitxc2 -lncbiid1 -lnetblast -lncbitool -lblastcompadj -lncbimla -lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbiobj -lncbi -Wl,-R/usr/dt/lib -Wl,-R/usr/openwin/lib -lXm -lXmu -lXt -lX11 -lXext -lresolv -lsocket -lrpcsvc -lnsl -lgen -lm
sequin3.c: In function 'AddBlastTag':
sequin3.c:18797:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
18797 | align_type = (Uint1) (Int4) gcp->userdata;
| ^
sequin3.c: In function 'CommonAddBlastToSeqAnnot':
sequin3.c:18822:60: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
18822 | GatherItem (sel->entityID, sel->itemID, sel->itemtype, (Pointer) (Int4) align_type, AddBlastTag);
| ^
sequin9.c: In function 'UpdatePairToUpdateTitlesDialog':
sequin9.c:14092:33: warning: conversion from 'long unsigned int' to 'Nlm_Uint4' {aka 'unsigned int'} changes value from '18446744073709551607' to '4294967287' [-Woverflow]
14092 | PRINTID_REPORT, sizeof (id_txt) - 50);
| ^~~~~~~~~~~~~~~~~~~~
ld: fatal: library -lXm: not found
ld: fatal: library -lXft: not found
ld: fatal: library -lXmu: not found
ld: fatal: library -lXt: not found
ld: fatal: library -lX11: not found
ld: fatal: library -lXext: not found
ld: fatal: file processing errors. No output written to Psequin
collect2: error: ld returned 1 exit status
*** Error code 1
Stop.
make: stopped making "all" in /home/pbulk/build/wip/ncbi-lib/work/ncbi/build
FAILURE primary make status = 0, demo = 0, threaded_demo = 0, net = 1
#######
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##### # # # # # # # #
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*** Error code 1
Stop.
bmake[1]: stopped making "all" in /data/jenkins/workspace/pkgsrc-trunk-x86_64/wip/ncbi-lib
*** Error code 1
Stop.
bmake: stopped making "all" in /data/jenkins/workspace/pkgsrc-trunk-x86_64/wip/ncbi-lib