+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /opt/local/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=312 WRKLOG=/tmp/bulklog/haplohseq-0.1.2.2/work.log + su pbulk -c '"$@"' make /opt/local/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=312 WRKLOG=/tmp/bulklog/haplohseq-0.1.2.2/work.log ===> Building for haplohseq-0.1.2.2 mkdir -p build build/bin build/obj g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/usr/include -I/opt/local/include/python3.12 -I./src -I./src/hmm -I./src/util -isystem/usr/local/boost_1_52_0 -c -o build/obj/Hmm.o src/hmm/Hmm.cpp src/hmm/Hmm.cpp: In member function 'double Hmm::getEmitProb(Transition*)': src/hmm/Hmm.cpp:112:52: error: call of overloaded 'pow(double&, unsigned int&)' is ambiguous 112 | 0.5 * ((pow(p_rl,r1) * pow(1 - p_rl, n1-r1)) * (pow(p_rl,r2) * pow(1 - p_rl, n2-r2)) + | ~~~^~~~~~~~~ In file included from /usr/include/math.h:35, from /opt/local/gcc13/include/c++/13.3.0/bits/std_abs.h:40, from /opt/local/gcc13/include/c++/13.3.0/cstdlib:81, from /opt/local/gcc13/include/c++/13.3.0/ext/string_conversions.h:43, from /opt/local/gcc13/include/c++/13.3.0/bits/basic_string.h:4109, from /opt/local/gcc13/include/c++/13.3.0/string:54, from /home/pbulk/build/biology/haplohseq/work/.buildlink/include/boost/assert/source_location.hpp:13, from /home/pbulk/build/biology/haplohseq/work/.buildlink/include/boost/exception/exception.hpp:9, from /home/pbulk/build/biology/haplohseq/work/.buildlink/include/boost/throw_exception.hpp:21, from /home/pbulk/build/biology/haplohseq/work/.buildlink/include/boost/lexical_cast/bad_lexical_cast.hpp:28, from /home/pbulk/build/biology/haplohseq/work/.buildlink/include/boost/lexical_cast.hpp:32, from src/hmm/Hmm.h:1, from src/hmm/Hmm.cpp:1: /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:112:67: error: call of overloaded 'pow(double, unsigned int)' is ambiguous 112 | 0.5 * ((pow(p_rl,r1) * pow(1 - p_rl, n1-r1)) * (pow(p_rl,r2) * pow(1 - p_rl, n2-r2)) + | ~~~^~~~~~~~~~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:112:92: error: call of overloaded 'pow(double&, unsigned int&)' is ambiguous 112 | 0.5 * ((pow(p_rl,r1) * pow(1 - p_rl, n1-r1)) * (pow(p_rl,r2) * pow(1 - p_rl, n2-r2)) + | ~~~^~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:112:107: error: call of overloaded 'pow(double, unsigned int)' is ambiguous 112 | 0.5 * ((pow(p_rl,r1) * pow(1 - p_rl, n1-r1)) * (pow(p_rl,r2) * pow(1 - p_rl, n2-r2)) + | ~~~^~~~~~~~~~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:113:55: error: call of overloaded 'pow(double&, unsigned int&)' is ambiguous 113 | (pow(p_al,r1) * pow(1 - p_al, n1-r1)) * (pow(p_al,r2) * pow(1 - p_al, n2-r2))) * | ~~~^~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:113:70: error: call of overloaded 'pow(double, unsigned int)' is ambiguous 113 | (pow(p_al,r1) * pow(1 - p_al, n1-r1)) * (pow(p_al,r2) * pow(1 - p_al, n2-r2))) * | ~~~^~~~~~~~~~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:113:95: error: call of overloaded 'pow(double&, unsigned int&)' is ambiguous 113 | (pow(p_al,r1) * pow(1 - p_al, n1-r1)) * (pow(p_al,r2) * pow(1 - p_al, n2-r2))) * | ~~~^~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:113:110: error: call of overloaded 'pow(double, unsigned int)' is ambiguous 113 | (pow(p_al,r1) * pow(1 - p_al, n1-r1)) * (pow(p_al,r2) * pow(1 - p_al, n2-r2))) * | ~~~^~~~~~~~~~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:115:52: error: call of overloaded 'pow(double&, unsigned int&)' is ambiguous 115 | 0.5 * ((pow(p_rl,r1) * pow(1 - p_rl, n1-r1)) * (pow(p_al,r2) * pow(1 - p_al, n2-r2)) + | ~~~^~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:115:67: error: call of overloaded 'pow(double, unsigned int)' is ambiguous 115 | 0.5 * ((pow(p_rl,r1) * pow(1 - p_rl, n1-r1)) * (pow(p_al,r2) * pow(1 - p_al, n2-r2)) + | ~~~^~~~~~~~~~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:115:92: error: call of overloaded 'pow(double&, unsigned int&)' is ambiguous 115 | 0.5 * ((pow(p_rl,r1) * pow(1 - p_rl, n1-r1)) * (pow(p_al,r2) * pow(1 - p_al, n2-r2)) + | ~~~^~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:115:107: error: call of overloaded 'pow(double, unsigned int)' is ambiguous 115 | 0.5 * ((pow(p_rl,r1) * pow(1 - p_rl, n1-r1)) * (pow(p_al,r2) * pow(1 - p_al, n2-r2)) + | ~~~^~~~~~~~~~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:116:55: error: call of overloaded 'pow(double&, unsigned int&)' is ambiguous 116 | (pow(p_al,r1) * pow(1 - p_al, n1-r1)) * (pow(p_rl,r2) * pow(1 - p_rl, n2-r2))) * | ~~~^~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:116:70: error: call of overloaded 'pow(double, unsigned int)' is ambiguous 116 | (pow(p_al,r1) * pow(1 - p_al, n1-r1)) * (pow(p_rl,r2) * pow(1 - p_rl, n2-r2))) * | ~~~^~~~~~~~~~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:116:95: error: call of overloaded 'pow(double&, unsigned int&)' is ambiguous 116 | (pow(p_al,r1) * pow(1 - p_al, n1-r1)) * (pow(p_rl,r2) * pow(1 - p_rl, n2-r2))) * | ~~~^~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:116:110: error: call of overloaded 'pow(double, unsigned int)' is ambiguous 116 | (pow(p_al,r1) * pow(1 - p_al, n1-r1)) * (pow(p_rl,r2) * pow(1 - p_rl, n2-r2))) * | ~~~^~~~~~~~~~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:123:52: error: call of overloaded 'pow(double&, unsigned int&)' is ambiguous 123 | 0.5 * ((pow(p_rl,r1) * pow(1 - p_rl, n1-r1)) * (pow(p_rl,r2) * pow(1 - p_rl, n2-r2)) + | ~~~^~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:123:67: error: call of overloaded 'pow(double, unsigned int)' is ambiguous 123 | 0.5 * ((pow(p_rl,r1) * pow(1 - p_rl, n1-r1)) * (pow(p_rl,r2) * pow(1 - p_rl, n2-r2)) + | ~~~^~~~~~~~~~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:123:92: error: call of overloaded 'pow(double&, unsigned int&)' is ambiguous 123 | 0.5 * ((pow(p_rl,r1) * pow(1 - p_rl, n1-r1)) * (pow(p_rl,r2) * pow(1 - p_rl, n2-r2)) + | ~~~^~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:123:107: error: call of overloaded 'pow(double, unsigned int)' is ambiguous 123 | 0.5 * ((pow(p_rl,r1) * pow(1 - p_rl, n1-r1)) * (pow(p_rl,r2) * pow(1 - p_rl, n2-r2)) + | ~~~^~~~~~~~~~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:124:55: error: call of overloaded 'pow(double&, unsigned int&)' is ambiguous 124 | (pow(p_al,r1) * pow(1 - p_al, n1-r1)) * (pow(p_al,r2) * pow(1 - p_al, n2-r2))) * | ~~~^~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:124:70: error: call of overloaded 'pow(double, unsigned int)' is ambiguous 124 | (pow(p_al,r1) * pow(1 - p_al, n1-r1)) * (pow(p_al,r2) * pow(1 - p_al, n2-r2))) * | ~~~^~~~~~~~~~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:124:95: error: call of overloaded 'pow(double&, unsigned int&)' is ambiguous 124 | (pow(p_al,r1) * pow(1 - p_al, n1-r1)) * (pow(p_al,r2) * pow(1 - p_al, n2-r2))) * | ~~~^~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:124:110: error: call of overloaded 'pow(double, unsigned int)' is ambiguous 124 | (pow(p_al,r1) * pow(1 - p_al, n1-r1)) * (pow(p_al,r2) * pow(1 - p_al, n2-r2))) * | ~~~^~~~~~~~~~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:126:52: error: call of overloaded 'pow(double&, unsigned int&)' is ambiguous 126 | 0.5 * ((pow(p_rl,r1) * pow(1 - p_rl, n1-r1)) * (pow(p_al,r2) * pow(1 - p_al, n2-r2)) + | ~~~^~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:126:67: error: call of overloaded 'pow(double, unsigned int)' is ambiguous 126 | 0.5 * ((pow(p_rl,r1) * pow(1 - p_rl, n1-r1)) * (pow(p_al,r2) * pow(1 - p_al, n2-r2)) + | ~~~^~~~~~~~~~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:126:92: error: call of overloaded 'pow(double&, unsigned int&)' is ambiguous 126 | 0.5 * ((pow(p_rl,r1) * pow(1 - p_rl, n1-r1)) * (pow(p_al,r2) * pow(1 - p_al, n2-r2)) + | ~~~^~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:126:107: error: call of overloaded 'pow(double, unsigned int)' is ambiguous 126 | 0.5 * ((pow(p_rl,r1) * pow(1 - p_rl, n1-r1)) * (pow(p_al,r2) * pow(1 - p_al, n2-r2)) + | ~~~^~~~~~~~~~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:127:55: error: call of overloaded 'pow(double&, unsigned int&)' is ambiguous 127 | (pow(p_al,r1) * pow(1 - p_al, n1-r1)) * (pow(p_rl,r2) * pow(1 - p_rl, n2-r2))) * | ~~~^~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:127:70: error: call of overloaded 'pow(double, unsigned int)' is ambiguous 127 | (pow(p_al,r1) * pow(1 - p_al, n1-r1)) * (pow(p_rl,r2) * pow(1 - p_rl, n2-r2))) * | ~~~^~~~~~~~~~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:127:95: error: call of overloaded 'pow(double&, unsigned int&)' is ambiguous 127 | (pow(p_al,r1) * pow(1 - p_al, n1-r1)) * (pow(p_rl,r2) * pow(1 - p_rl, n2-r2))) * | ~~~^~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ src/hmm/Hmm.cpp:127:110: error: call of overloaded 'pow(double, unsigned int)' is ambiguous 127 | (pow(p_al,r1) * pow(1 - p_al, n1-r1)) * (pow(p_rl,r2) * pow(1 - p_rl, n2-r2))) * | ~~~^~~~~~~~~~~~~~~~~ /usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)' 226 | inline long double pow(long double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)' 222 | inline long double pow(long double __X, long double __Y) { | ^~~ /usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)' 177 | inline float pow(float __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)' 175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); } | ^~~ /usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)' 154 | inline double pow(double __X, int __Y) { | ^~~ /usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)' 76 | extern double pow(double, double); | ^~~ gmake: *** [makefile:49: build/obj/Hmm.o] Error 1 *** Error code 2 Stop. bmake[1]: stopped making "all" in /data/jenkins/workspace/pkgsrc-trunk-x86_64/biology/haplohseq *** Error code 1 Stop. bmake: stopped making "all" in /data/jenkins/workspace/pkgsrc-trunk-x86_64/biology/haplohseq