+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /opt/local/bin/bmake stage-install BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/R-units-0.8.2/work.log + su pbulk -c '"$@"' make /opt/local/bin/bmake stage-install BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/R-units-0.8.2/work.log => Bootstrap dependency digest>=20211023: found digest-20220214 ===> Installing for R-units-0.8.2 => Generating pre-install file lists => Creating installation directories * installing *source* package 'units' ... files 'configure', 'configure.ac' have the wrong MD5 checksums ** using staged installation configure: units: 0.8-2 checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ -std=gnu++14 accepts -g... yes checking for g++ -std=gnu++14 option to enable C++11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for _Bool... no checking for stdbool.h that conforms to C99... yes checking for error_at_line... no checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for XML_ParserCreate in -lexpat... yes checking for udunits2.h... yes checking for ut_read_xml in -ludunits2... yes configure: creating ./config.status config.status: creating src/Makevars ** libs g++ -std=gnu++14 -I"/opt/local/lib/R/include" -DNDEBUG -DUDUNITS2_DIR=0 -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I'/opt/local/lib/R/library/Rcpp/include' -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++14 -I"/opt/local/lib/R/include" -DNDEBUG -DUDUNITS2_DIR=0 -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I'/opt/local/lib/R/library/Rcpp/include' -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -c udunits.cpp -o udunits.o g++ -std=gnu++14 -shared -Wl,-R/opt/local/lib/R/lib -L/opt/local/lib/R/lib -L/opt/local/gcc13/lib/gcc/x86_64-sun-solaris2.11/13.2.0 -Wl,-R/opt/local/gcc13/lib/gcc/x86_64-sun-solaris2.11/13.2.0 -L/opt/local/lib -Wl,-R/opt/local/lib -liconv -lintl -pthread -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -o units.so RcppExports.o udunits.o -lexpat -lexpat -ludunits2 -Wl,-R/opt/local/lib/R/lib -L/opt/local/lib/R/lib -lR installing to /home/pbulk/build/math/R-units/work/.destdir/opt/local/lib/R/library/00LOCK-units/00new/units/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries elfedit: invalid option -- r Usage: elfedit elffile(s) Update the ELF header of ELF files The options are: --input-mach [none|i386|iamcu|l1om|k1om|x86_64] Set input machine type --output-mach [none|i386|iamcu|l1om|k1om|x86_64] Set output machine type --input-type [none|rel|exec|dyn] Set input file type --output-type [none|rel|exec|dyn] Set output file type --input-osabi [none|HPUX|NetBSD|GNU|Linux|Solaris|AIX|Irix|FreeBSD|TRU64|Modesto|OpenBSD|OpenVMS|NSK|AROS|FenixOS] Set input OSABI --output-osabi [none|HPUX|NetBSD|GNU|Linux|Solaris|AIX|Irix|FreeBSD|TRU64|Modesto|OpenBSD|OpenVMS|NSK|AROS|FenixOS] Set output OSABI --input-abiversion [0-255] Set input ABIVERSION --output-abiversion [0-255] Set output ABIVERSION --enable-x86-feature [ibt|shstk|lam_u48|lam_u57] Enable x86 feature --disable-x86-feature [ibt|shstk|lam_u48|lam_u57] Disable x86 feature -h --help Display this information -v --version Display the version number of elfedit elfedit: invalid option -- r Usage: elfedit elffile(s) Update the ELF header of ELF files The options are: --input-mach [none|i386|iamcu|l1om|k1om|x86_64] Set input machine type --output-mach [none|i386|iamcu|l1om|k1om|x86_64] Set output machine type --input-type [none|rel|exec|dyn] Set input file type --output-type [none|rel|exec|dyn] Set output file type --input-osabi [none|HPUX|NetBSD|GNU|Linux|Solaris|AIX|Irix|FreeBSD|TRU64|Modesto|OpenBSD|OpenVMS|NSK|AROS|FenixOS] Set input OSABI --output-osabi [none|HPUX|NetBSD|GNU|Linux|Solaris|AIX|Irix|FreeBSD|TRU64|Modesto|OpenBSD|OpenVMS|NSK|AROS|FenixOS] Set output OSABI --input-abiversion [0-255] Set input ABIVERSION --output-abiversion [0-255] Set output ABIVERSION --enable-x86-feature [ibt|shstk|lam_u48|lam_u57] Enable x86 feature --disable-x86-feature [ibt|shstk|lam_u48|lam_u57] Disable x86 feature -h --help Display this information -v --version Display the version number of elfedit ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (units) => Generating CTF data => Automatic stripping of debug information => Automatic manual page handling => Generating post-install file lists => Checking file-check results for R-units-0.8.2 => Checking for non-existent script interpreters in R-units-0.8.2 => Checking file permissions in R-units-0.8.2 => Checking for missing run-time search paths in R-units-0.8.2 ERROR: lib/R/library/units/libs/units.so: /opt/local/lib/libexpat.so.1: expat-2.5.0 is not a runtime dependency *** Error code 1 Stop. bmake[1]: stopped in /data/jenkins/workspace/pkgsrc-trunk-x86_64/math/R-units *** Error code 1 Stop. bmake: stopped in /data/jenkins/workspace/pkgsrc-trunk-x86_64/math/R-units