+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /opt/local/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/biolibc-tools-0.1.4.9/work.log
+ su pbulk -c '"$@"' make /opt/local/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/biolibc-tools-0.1.4.9/work.log
=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Building for biolibc-tools-0.1.4.9
cd /home/pbulk/build/biology/biolibc-tools/work/biolibc-tools-6d9604303fa43418a423840c916407af2b069184 && /opt/local/bin/bmake PREFIX=/opt/local depend
rm -f Makefile.depend
for file in *.c; do  gcc -isystem /opt/local/include -isystem /opt/local/include -MM ${file} >> Makefile.depend;  printf "\t\${CC} -c \${CFLAGS} ${file}\n\n" >> Makefile.depend;  done
rm -f Makefile.depend
for file in *.c; do  gcc -isystem /opt/local/include -isystem /opt/local/include -MM ${file} >> Makefile.depend;  printf "\t\${CC} -c \${CFLAGS} ${file}\n\n" >> Makefile.depend;  done
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -DLIBEXECDIR=\"/opt/local/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -Wno-char-subscripts -isystem /opt/local/include -isystem /opt/local/include fastx2tsv.c
fastx2tsv.c: In function 'main':
fastx2tsv.c:42:9: warning: implicit declaration of function 'strtr'; did you mean 'strstr'? [-Wimplicit-function-declaration]
   42 |         strtr(bl_fastx_desc(&rec), "\t", " ", 0);
      |         ^~~~~
      |         strstr
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -DLIBEXECDIR=\"/opt/local/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -Wno-char-subscripts -isystem /opt/local/include -isystem /opt/local/include fastx-derep.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -DLIBEXECDIR=\"/opt/local/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -Wno-char-subscripts -isystem /opt/local/include -isystem /opt/local/include vcf-search.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -DLIBEXECDIR=\"/opt/local/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -Wno-char-subscripts -isystem /opt/local/include -isystem /opt/local/include fasta2seq.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -DLIBEXECDIR=\"/opt/local/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -Wno-char-subscripts -isystem /opt/local/include -isystem /opt/local/include find-orfs.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -DLIBEXECDIR=\"/opt/local/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -Wno-char-subscripts -isystem /opt/local/include -isystem /opt/local/include gff3-to-bed.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -DLIBEXECDIR=\"/opt/local/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -Wno-char-subscripts -isystem /opt/local/include -isystem /opt/local/include extract-seq.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -DLIBEXECDIR=\"/opt/local/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -Wno-char-subscripts -isystem /opt/local/include -isystem /opt/local/include chrom-lens.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -DLIBEXECDIR=\"/opt/local/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -Wno-char-subscripts -isystem /opt/local/include -isystem /opt/local/include fastx-stats.c
gcc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -DLIBEXECDIR=\"/opt/local/libexec/biolibc-tools\" -DXXH_INLINE_ALL -DVERSION=\"`./version.sh`\" -Wno-char-subscripts -isystem /opt/local/include -isystem /opt/local/include ensemblid2gene.c
ensemblid2gene.c: In function 'main':
ensemblid2gene.c:51:82: error: 'strptrcmp' undeclared (first use in this function); did you mean 'xt_strptrcmp'?
   51 |     qsort(id_list, id_count, sizeof(*id_list), (int(*)(const void *,const void*))strptrcmp);
      |                                                                                  ^~~~~~~~~
      |                                                                                  xt_strptrcmp
ensemblid2gene.c:51:82: note: each undeclared identifier is reported only once for each function it appears in
ensemblid2gene.c:77:58: error: 'strptrcasecmp' undeclared (first use in this function); did you mean 'xt_strptrcasecmp'?
   77 |                     (int (*)(const void *, const void *))strptrcasecmp);
      |                                                          ^~~~~~~~~~~~~
      |                                                          xt_strptrcasecmp
*** [ensemblid2gene.o] Error code 1

bmake: stopped in /home/pbulk/build/biology/biolibc-tools/work/biolibc-tools-6d9604303fa43418a423840c916407af2b069184
1 error

bmake: stopped in /home/pbulk/build/biology/biolibc-tools/work/biolibc-tools-6d9604303fa43418a423840c916407af2b069184
*** Error code 2

Stop.
bmake[1]: stopped in /data/jenkins/workspace/pkgsrc-trunk-x86_64/biology/biolibc-tools
*** Error code 1

Stop.
bmake: stopped in /data/jenkins/workspace/pkgsrc-trunk-x86_64/biology/biolibc-tools