+ local run_cmd + run_cmd=run_su + shift + run_su /usr/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=312 WRKLOG=/tmp/bulklog/ncbi-blast+-2.14.1nb7/work.log + su pbulk -c '"$@"' make /usr/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=312 WRKLOG=/tmp/bulklog/ncbi-blast+-2.14.1nb7/work.log ===> Building for ncbi-blast+-2.14.1nb7 if test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.flat; then \ cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake -f Makefile.flat; \ elif test -s ""; then \ cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo19691 all_p; \ else \ cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo19691 all_r; \ fi gmake[1]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' gmake[1]: warning: -j2 forced in submake: resetting jobserver mode. Build session ID: 2e7981ea-55b3-40fc-83a6-a8f298e8de8e /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ctools/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gui/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/ctools/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT sample/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/gui/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT internal/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sample/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/internal/Makefile /usr/pkg/bin/gmake -C corelib -j2 --jobserver-auth=fifo:/tmp//GMfifo7917 all_r || exit 5 gmake[2]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[2]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT jaeger/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger/Makefile gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake[4] (Makefile.precompile): Nothing to be done for `all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -j2 --jobserver-auth=fifo:/tmp//GMfifo25428 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -j2 --jobserver-auth=fifo:/tmp//GMfifo25428 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -j2 --jobserver-auth=fifo:/tmp//GMfifo25428 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -j2 --jobserver-auth=fifo:/tmp//GMfifo25428 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -j2 --jobserver-auth=fifo:/tmp//GMfifo25428 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/blob_storage.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_os_unix.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ddumpable.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/env_reg.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/metareg.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_config.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_param.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_process.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_safe_static.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_signal.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_stack.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_system.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiapp.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiargs.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiatomic.cpp. Updating dependency information for ncbicfg.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidbg.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag_p.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidll.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbienv.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexec.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexpt.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbifile.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimempool.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimtx.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiobj.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbireg.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistre.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbithr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbitime.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/obj_store.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager_store.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/rwstreambuf.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/stream_utils.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/syslog.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/version.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_ctx.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_control.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/expr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_strings.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/resource_info.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/interprocess_lock.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_autoinit.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/perf_log.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_toolkit.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbierror.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_url.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_cookies.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/guard.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_message.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_status.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_fast.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_pool_balancer.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/env_reg.cpp -o env_reg.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/metareg.cpp -o metareg.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e ncbicfg.c -o ncbicfg.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:956:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] 956 | value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:464:34: note: declared here 464 | NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); | ^~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:2039:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] 2039 | CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:1096:1: note: declared here 1096 | CDiagContextThreadData::GetProperties(EGetProperties flag) | ^~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'std::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:2102:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] 2102 | CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:1096:1: note: declared here 1096 | CDiagContextThreadData::GetProperties(EGetProperties flag) | ^~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:2127:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] 2127 | CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:1096:1: note: declared here 1096 | CDiagContextThreadData::GetProperties(EGetProperties flag) | ^~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:2159:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] 2159 | CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:1096:1: note: declared here 1096 | CDiagContextThreadData::GetProperties(EGetProperties flag) | ^~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:3755:48: warning: 'virtual bool ncbi::CNcbiApplicationAPI::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] 3755 | app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_param.hpp:41, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbifile.hpp:55, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:41: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiapp_api.hpp:393:34: note: declared here 393 | NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); | ^~~~~~~~~~~~~~~~~~~~~ 8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidll.cpp -o ncbidll.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbienv.cpp -o ncbienv.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OF/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbifile.cpp: In function 'void ncbi::s_GetFileSystemInfo(const string&, ncbi::CFileUtil::SFileSystemInfo*, ncbi::TFileSystemInfo)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbifile.cpp:5168:10: warning: variable 'need_name_max' set but not used [-Wunused-but-set-variable] 5168 | bool need_name_max = true; | ^~~~~~~~~~~~~ FSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbifile.cpp -o ncbifile.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /h/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp: In static member function 'static ncbi::SIZE_TYPE ncbi::NStr::DoubleToString_Ecvt(double, unsigned int, char*, ncbi::SIZE_TYPE, int*, int*)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp:2656:20: warning: 'char* strncpy(char*, const char*, size_t)' output may be truncated copying between 0 and 15 bytes from a string of length 31 [-Wstringop-truncation] 2656 | strncpy(buffer,digits,digits_len); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ome/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbireg.cpp -o ncbireg.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp -o ncbistr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistre.cpp -o ncbistre.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbithr.cpp -o ncbithr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbitime.cpp -o ncbitime.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/obj_store.cpp -o obj_store.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/stream_utils.cpp -o stream_utils.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/syslog.cpp -o syslog.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/version.cpp -o version.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_ctx.cpp -o request_ctx.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_control.cpp -o request_control.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/expr.cpp -o expr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/resource_info.cpp -o resource_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/perf_log.cpp -o perf_log.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbierror.cpp -o ncbierror.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/guard.cpp -o guard.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_status.cpp -o request_status.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_fast.cpp -o ncbi_fast.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp -o ncbi_dbsvcmapper.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_pool_balancer.cpp -o ncbi_pool_balancer.o /bin/rm -f libxncbi.a .libxncbi.a.stamp ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o ncbi_fast.o ncbi_dbsvcmapper.o ncbi_pool_balancer.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxncbi.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxncbi.a /bin/ln -f .xncbi.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xncbi.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -j2 --jobserver-auth=fifo:/tmp//GMfifo25428 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test_mt.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtest_mt.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtest_mt.a /bin/ln -f .test_mt.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.test_mt.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo19991 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test' /usr/pkg/bin/gmake -C jaeger -j2 --jobserver-auth=fifo:/tmp//GMfifo19991 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger' gmake[2]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -C util -j2 --jobserver-auth=fifo:/tmp//GMfifo7917 all_r || exit 5 gmake[2]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[2]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in` /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT diff/Makefile test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT image/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT qparse/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo/Makefile gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -j2 --jobserver-auth=fifo:/tmp//GMfifo26163 export-headers gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -j2 --jobserver-auth=fifo:/tmp//GMfifo26163 flag-stamps gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -j2 --jobserver-auth=fifo:/tmp//GMfifo26163 all gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/utf8.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/random_gen.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_cityhash.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_farmhash.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bytesrc.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strbuffer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itree.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/smalldns.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_old.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ddump_viewer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strsearch.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/logrotate.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ascii85.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/md5.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/file_obsolete.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/unicode.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary_util.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_nonstop.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sgml_entity.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/static_set.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/transmissionrw.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/miscmath.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/mutex_pool.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ncbi_cache.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/line_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_exception.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/uttp.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multi_writer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itransaction.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_ctrl.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/scheduler.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/distribution.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/rangelist.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_misc.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/histogram_binning.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/table_printer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/retry_ctx.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/stream_source.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/file_manifest.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/cache_async.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/crc32_sse.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/random_gen.cpp -o random_gen.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/utf8.cpp -o utf8.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum.cpp -o checksum.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_cityhash.cpp -o checksum_cityhash.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_farmhash.cpp -o checksum_farmhash.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bytesrc.cpp -o bytesrc.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strbuffer.cpp -o strbuffer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itree.cpp -o itree.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/smalldns.cpp -o smalldns.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strsearch.cpp -o strsearch.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/logrotate.cpp -o logrotate.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/u/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp: In member function 'bool ncbi::CFormatGuess::TestFormatNewick(ncbi::CFormatGuess::EMode)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp:1119:24: warning: 'char* strncpy(char*, const char*, size_t)' accessing 12 bytes at offsets 0 and [0, 16397] may overlap up to 12 bytes at offset [0, 11] [-Wrestrict] 1119 | strncpy(test_buf, test_buf + num_read, check_size); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp -o format_guess.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ascii85.cpp -o ascii85.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/md5.cpp -o md5.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/file_obsolete.cpp -o file_obsolete.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/unicode.cpp -o unicode.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary.cpp -o dictionary.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary_util.cpp -o dictionary_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_nonstop.cpp -o thread_nonstop.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sgml_entity.cpp -o sgml_entity.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/static_set.cpp -o static_set.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/transmissionrw.cpp -o transmissionrw.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/miscmath.c -o miscmath.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/mutex_pool.cpp -o mutex_pool.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ncbi_cache.cpp -o ncbi_cache.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/line_reader.cpp -o line_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_exception.cpp -o util_exception.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/uttp.cpp -o uttp.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multi_writer.cpp -o multi_writer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itransaction.cpp -o itransaction.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool.cpp -o thread_pool.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/scheduler.cpp -o scheduler.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/distribution.cpp -o distribution.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/rangelist.cpp -o rangelist.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_misc.cpp -o util_misc.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/histogram_binning.cpp -o histogram_binning.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/table_printer.cpp -o table_printer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/retry_ctx.cpp -o retry_ctx.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/stream_source.cpp -o stream_source.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/file_manifest.cpp -o file_manifest.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/cache_async.cpp -o cache_async.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp -o multipattern_search.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/crc32_sse.cpp -o crc32_sse.o /bin/rm -f libxutil.a .libxutil.a.stamp ar cr libxutil.a random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o crc32_sse.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxutil.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxutil.a /bin/ln -f .xutil.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xutil.dep gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -C regexp -j2 --jobserver-auth=fifo:/tmp//GMfifo26163 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project regexp due to unmet requirements: LocalPCRE gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/regexp TMPL=regexp -j2 --jobserver-auth=fifo:/tmp//GMfifo26167 mark-as-disabled gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' /usr/pkg/bin/gmake -C xregexp -j2 --jobserver-auth=fifo:/tmp//GMfifo26163 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -j2 --jobserver-auth=fifo:/tmp//GMfifo19869 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j2 --jobserver-auth=fifo:/tmp//GMfifo19869 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -j2 --jobserver-auth=fifo:/tmp//GMfifo19869 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j2 --jobserver-auth=fifo:/tmp//GMfifo19869 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -j2 --jobserver-auth=fifo:/tmp//GMfifo19869 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/arg_regexp.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/mask_regexp.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/usr/pkg/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/usr/pkg/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/usr/pkg/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/usr/pkg/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp -o convert_dates_iso8601.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o convert_dates_iso8601.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxregexp.a /bin/ln -f .xregexp.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xregexp.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j2 --jobserver-auth=fifo:/tmp//GMfifo19869 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp_template_tester.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -C compress -j2 --jobserver-auth=fifo:/tmp//GMfifo26163 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /usr/pkg/bin/gmake -C bzip2 -j2 --jobserver-auth=fifo:/tmp//GMfifo10996 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -j2 --jobserver-auth=fifo:/tmp//GMfifo17566 mark-as-disabled gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/pkg/bin/gmake -C zlib -j2 --jobserver-auth=fifo:/tmp//GMfifo10996 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project zlib due to unmet requirements: LocalZ gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/zlib TMPL=zlib -j2 --jobserver-auth=fifo:/tmp//GMfifo2726 mark-as-disabled gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/pkg/bin/gmake -C api -j2 --jobserver-auth=fifo:/tmp//GMfifo10996 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -j2 --jobserver-auth=fifo:/tmp//GMfifo22520 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -j2 --jobserver-auth=fifo:/tmp//GMfifo22520 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -j2 --jobserver-auth=fifo:/tmp//GMfifo22520 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/compress.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/lzo.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zstd.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_zip.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/compress.cpp -o compress.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream.cpp -o stream.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zstd.cpp -o zstd.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_zip.cpp:61: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/miniz/miniz.c:3098:118: note: '#pragma message: Using fopen, ftello, fseeko, stat() etc. path for file I/O - this path may not support large files.' 3098 | #pragma message("Using fopen, ftello, fseeko, stat() etc. path for file I/O - this path may not support large files.") | ^ pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/tar.cpp -o tar.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive.cpp -o archive.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o lzo.o zlib.o zstd.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcompress.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress' /usr/pkg/bin/gmake -C diff -j2 --jobserver-auth=fifo:/tmp//GMfifo26163 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff' /usr/pkg/bin/gmake -C image -j2 --jobserver-auth=fifo:/tmp//GMfifo26163 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image' /usr/pkg/bin/gmake -C tables -j2 --jobserver-auth=fifo:/tmp//GMfifo26163 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test/Makefile gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -j2 --jobserver-auth=fifo:/tmp//GMfifo23673 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -j2 --jobserver-auth=fifo:/tmp//GMfifo23673 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -j2 --jobserver-auth=fifo:/tmp//GMfifo23673 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/raw_scoremat.c. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.tables.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo23673 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -C sequtil -j2 --jobserver-auth=fifo:/tmp//GMfifo26163 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -j2 --jobserver-auth=fifo:/tmp//GMfifo23827 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -j2 --jobserver-auth=fifo:/tmp//GMfifo23827 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -j2 --jobserver-auth=fifo:/tmp//GMfifo23827 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_manip.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_shared.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.sequtil.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/pkg/bin/gmake -C bitset -j2 --jobserver-auth=fifo:/tmp//GMfifo26163 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test/Makefile /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo25792 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test' /usr/pkg/bin/gmake -C demo -j2 --jobserver-auth=fifo:/tmp//GMfifo25792 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset' /usr/pkg/bin/gmake -C qparse -j2 --jobserver-auth=fifo:/tmp//GMfifo26163 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse' /usr/pkg/bin/gmake -C lmdb -j2 --jobserver-auth=fifo:/tmp//GMfifo26163 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LocalLMDB.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' /usr/pkg/bin/gmake -C lmdbxx -j2 --jobserver-auth=fifo:/tmp//GMfifo26163 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -j2 --jobserver-auth=fifo:/tmp//GMfifo27369 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -j2 --jobserver-auth=fifo:/tmp//GMfifo27369 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx/example.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/lmdbxx -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=lmdbxx_sample -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx/example.cpp -o example.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 example.o -Wl,-rpath-link,/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxncbi -llmdb -lpthread -lm -lpthread -o lmdbxx_sample strip lmdbxx_sample /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdbxx_sample /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f lmdbxx_sample /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/lmdbxx_sample gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo26163 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test' /usr/pkg/bin/gmake -C demo -j2 --jobserver-auth=fifo:/tmp//GMfifo26163 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo' /usr/pkg/bin/gmake -C profile -j2 --jobserver-auth=fifo:/tmp//GMfifo26163 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -j2 --jobserver-auth=fifo:/tmp//GMfifo19939 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -j2 --jobserver-auth=fifo:/tmp//GMfifo19939 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -j2 --jobserver-auth=fifo:/tmp//GMfifo19939 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile/rtprofile.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile/rtprofile.cpp -o rtprofile.o /bin/rm -f libutrtprof.a .libutrtprof.a.stamp ar cr libutrtprof.a rtprofile.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libutrtprof.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libutrtprof.a /bin/ln -f .utrtprof.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.utrtprof.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[2]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -C connect -j2 --jobserver-auth=fifo:/tmp//GMfifo7917 all_r || exit 5 gmake[2]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[2]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test/Makefile gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -j2 --jobserver-auth=fifo:/tmp//GMfifo19976 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -j2 --jobserver-auth=fifo:/tmp//GMfifo19976 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -j2 --jobserver-auth=fifo:/tmp//GMfifo19976 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -j2 --jobserver-auth=fifo:/tmp//GMfifo19976 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -j2 --jobserver-auth=fifo:/tmp//GMfifo19976 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -j2 --jobserver-auth=fifo:/tmp//GMfifo19976 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -j2 --jobserver-auth=fifo:/tmp//GMfifo19976 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -j2 --jobserver-auth=fifo:/tmp//GMfifo19976 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -j2 --jobserver-auth=fifo:/tmp//GMfifo19976 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -j2 --jobserver-auth=fifo:/tmp//GMfifo19976 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -j2 --jobserver-auth=fifo:/tmp//GMfifo19976 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p mbedtls Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_mbedtls.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_gnutls.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_tls.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aes.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aesni.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/arc4.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aria.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1parse.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1write.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/base64.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/bignum.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/blowfish.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/camellia.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ccm.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/chacha20.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/chachapoly.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cipher.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cipher_wrap.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cmac.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/constant_time.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ctr_drbg.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/des.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/dhm.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecdh.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecdsa.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecjpake.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecp.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecp_curves.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/entropy.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/entropy_poll.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/error.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/gcm.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/havege.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/hkdf.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/hmac_drbg.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md2.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md4.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mbedtls_md5.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mps_reader.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mps_trace.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/nist_kw.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/oid.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/padlock.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pem.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pk.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pk_wrap.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs12.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs5.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkparse.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkwrite.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/platform.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/platform_util.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/poly1305.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_aead.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_cipher.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_client.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_driver_wrappers.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_ecp.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_hash.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_mac.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_rsa.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_se.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_slot_management.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_storage.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_its_file.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ripemd160.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/rsa.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/rsa_internal.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/sha1.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/sha256.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/sha512.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/threading.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/timing.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mbedtls_version.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/version_features.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/xtea.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/certs.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs11.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_create.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_crl.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_crt.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_csr.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509write_crt.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509write_csr.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/debug.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/net_sockets.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cache.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cli.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cookie.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_msg.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_srv.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_ticket.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_tls.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_tls13_keys.c. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_tls.c -o ncbi_tls.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aes.c -o mbedtls/aes.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aesni.c -o mbedtls/aesni.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/arc4.c -o mbedtls/arc4.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aria.c -o mbedtls/aria.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1parse.c -o mbedtls/asn1parse.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1write.c -o mbedtls/asn1write.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/base64.c -o mbedtls/base64.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/bignum.c -o mbedtls/bignum.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/blowfish.c -o mbedtls/blowfish.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/camellia.c -o mbedtls/camellia.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ccm.c -o mbedtls/ccm.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/chacha20.c -o mbedtls/chacha20.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/chachapoly.c -o mbedtls/chachapoly.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cipher.c -o mbedtls/cipher.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cipher_wrap.c -o mbedtls/cipher_wrap.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cmac.c -o mbedtls/cmac.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/constant_time.c -o mbedtls/constant_time.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ctr_drbg.c -o mbedtls/ctr_drbg.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/des.c -o mbedtls/des.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/dhm.c -o mbedtls/dhm.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecdh.c -o mbedtls/ecdh.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecdsa.c -o mbedtls/ecdsa.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecjpake.c -o mbedtls/ecjpake.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecp.c -o mbedtls/ecp.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecp_curves.c -o mbedtls/ecp_curves.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/entropy.c -o mbedtls/entropy.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/entropy_poll.c -o mbedtls/entropy_poll.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/error.c -o mbedtls/error.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/gcm.c -o mbedtls/gcm.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/havege.c -o mbedtls/havege.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/hkdf.c -o mbedtls/hkdf.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/hmac_drbg.c -o mbedtls/hmac_drbg.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md.c -o mbedtls/md.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md2.c -o mbedtls/md2.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md4.c -o mbedtls/md4.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mbedtls_md5.c -o mbedtls/mbedtls_md5.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c -o mbedtls/memory_buffer_alloc.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mps_reader.c -o mbedtls/mps_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mps_trace.c -o mbedtls/mps_trace.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/nist_kw.c -o mbedtls/nist_kw.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/oid.c -o mbedtls/oid.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/padlock.c -o mbedtls/padlock.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pem.c -o mbedtls/pem.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pk.c -o mbedtls/pk.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pk_wrap.c -o mbedtls/pk_wrap.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs12.c -o mbedtls/pkcs12.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs5.c -o mbedtls/pkcs5.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkparse.c -o mbedtls/pkparse.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkwrite.c -o mbedtls/pkwrite.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/platform.c -o mbedtls/platform.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/platform_util.c -o mbedtls/platform_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/poly1305.c -o mbedtls/poly1305.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto.c -o mbedtls/psa_crypto.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_aead.c -o mbedtls/psa_crypto_aead.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_cipher.c -o mbedtls/psa_crypto_cipher.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_client.c -o mbedtls/psa_crypto_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_driver_wrappers.c -o mbedtls/psa_crypto_driver_wrappers.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_ecp.c -o mbedtls/psa_crypto_ecp.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_hash.c -o mbedtls/psa_crypto_hash.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_mac.c -o mbedtls/psa_crypto_mac.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_rsa.c -o mbedtls/psa_crypto_rsa.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_se.c -o mbedtls/psa_crypto_se.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_slot_management.c -o mbedtls/psa_crypto_slot_management.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_storage.c -o mbedtls/psa_crypto_storage.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_its_file.c -o mbedtls/psa_its_file.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ripemd160.c -o mbedtls/ripemd160.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/rsa.c -o mbedtls/rsa.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/rsa_internal.c -o mbedtls/rsa_internal.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/sha1.c -o mbedtls/sha1.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/sha256.c -o mbedtls/sha256.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/sha512.c -o mbedtls/sha512.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/threading.c -o mbedtls/threading.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/timing.c -o mbedtls/timing.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mbedtls_version.c -o mbedtls/mbedtls_version.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/version_features.c -o mbedtls/version_features.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/xtea.c -o mbedtls/xtea.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/certs.c -o mbedtls/certs.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs11.c -o mbedtls/pkcs11.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509.c -o mbedtls/x509.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_create.c -o mbedtls/x509_create.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_crl.c -o mbedtls/x509_crl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_crt.c -o mbedtls/x509_crt.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_csr.c -o mbedtls/x509_csr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509write_crt.c -o mbedtls/x509write_crt.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509write_csr.c -o mbedtls/x509write_csr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/debug.c -o mbedtls/debug.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/net_sockets.c -o mbedtls/net_sockets.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cache.c -o mbedtls/ssl_cache.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c -o mbedtls/ssl_ciphersuites.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cli.c -o mbedtls/ssl_cli.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cookie.c -o mbedtls/ssl_cookie.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_msg.c -o mbedtls/ssl_msg.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_srv.c -o mbedtls/ssl_srv.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_ticket.c -o mbedtls/ssl_ticket.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_tls.c -o mbedtls/ssl_tls.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_tls13_keys.c -o mbedtls/ssl_tls13_keys.o /bin/rm -f libconnssl.a .libconnssl.a.stamp ar cr libconnssl.a ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnssl.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnssl.a /bin/ln -f .connssl.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connssl.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -j2 --jobserver-auth=fifo:/tmp//GMfifo19976 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ansi_ext.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_types.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_priv.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_util.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_buffer.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connector.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connection.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connutil.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ipv6.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_server_info.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_host_info.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_sendmail.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_base64.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lb.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_connector.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_file_connector.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_memory_connector.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_connector.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_version.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_iprange.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_local.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_dispd.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_linkerd.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namerd.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm.c -o ncbi_lbsm.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c -o ncbi_lbsm_ipc.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_types.c -o ncbi_types.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core.c -o ncbi_core.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_util.c -o ncbi_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I//home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c: In function 's_Read_': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:3093:20: warning: 'rtv' may be used uninitialized in this function [-Wmaybe-uninitialized] 3093 | struct timeval rtv; | ^~~ usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c: In function 'x_Authenticate': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c:261:18: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 261 | s[userlen++] = ':'; | ~~~~~~~~~~~~~^~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c:206:10: note: at offset -1 to object 'buf' with size 458 declared here 206 | char buf[80 + (CONN_USER_LEN + CONN_PASS_LEN)*3], *s; | ^~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c:261:18: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 261 | s[userlen++] = ':'; | ~~~~~~~~~~~~~^~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c:206:10: note: at offset -1 to object 'buf' with size 458 declared here 206 | char buf[80 + (CONN_USER_LEN + CONN_PASS_LEN)*3], *s; | ^~~ -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr//home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPXfer': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c:963:11: warning: array subscript -1 is outside array bounds of 'char[128]' [-Warray-bounds] 963 | q = c > buf ? c[-1] : '\0'; | ~~^~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c:950:10: note: while referencing 'buf' 950 | char buf[128]; | ^~~ pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_version.c -o ncbi_version.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_local.c -o ncbi_local.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c -o ncbi_lbsmd.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c: In function 's_GetNextInfo': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:696:51: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] 696 | || SERV_EqualInfo(skip, &svc->info))) { | ^~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:699:45: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] 699 | } else if (SERV_EqualInfo(skip, &svc->info)) | ^~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:850:31: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] 850 | cand[n].cand.info = &svc->info; | ^~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:938:37: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] 938 | if ((info = SERV_CopyInfoEx(&svc->info, name)) != 0) { | ^~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namerd.c: In function 'x_SetupConnectionParams': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namerd.c:1000:45: warning: 'arglen' may be used uninitialized in this function [-Wmaybe-uninitialized] 1000 | bufsize = (arglen ? arglen + 3/*"%3B"*/ : 0) + dtablen * 3 + 1/*'\0'*/; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namerd.c:971:36: note: 'arglen' was declared here 971 | size_t dtablen = strlen(dtab), arglen, bufsize, dtab_in, dtab_out; | ^~~~~~ In file included from /usr/include/stdio.h:595, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/ncbi_util.h:69, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_priv.h:62, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_once.h:40, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c:36: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c: In function 'x_DumpRR': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c:301:24: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'long unsigned int' [-Wformat=] 301 | sprintf(szbuf, " (%u)", ns_rr_rdlen(*rr)); | ^~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c:301:28: note: format string is defined here 301 | sprintf(szbuf, " (%u)", ns_rr_rdlen(*rr)); | ~^ | | | unsigned int | %lu BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_linkerd.c -o ncbi_linkerd.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c -o parson.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip.c -o ncbi_localip.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c -o ncbi_lbdns.o /bin/rm -f libconnect.a .libconnect.a.stamp ar cr libconnect.a ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_lbsmd.o ncbi_dispd.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnect.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnect.a /bin/ln -f .connect.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connect.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -j2 --jobserver-auth=fifo:/tmp//GMfifo19976 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_cxx.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core_cxx.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/email_diag_handler.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_stream.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_test.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_misc.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe_connector.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_userhost.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_monkey.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_cxx.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip_cxx.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_blowfish.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_usage_report.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip_cxx.cpp -o ncbi_localip_cxx.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_blowfish.c -o ncbi_blowfish.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_usage_report.cpp -o ncbi_usage_report.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp -o connect_misc.o /bin/rm -f libxxconnect.a .libxxconnect.a.stamp ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xxconnect.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -j2 --jobserver-auth=fifo:/tmp//GMfifo19976 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_lbsmd.o ncbi_dispd.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnect.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnect.a /bin/ln -f .xconnect.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnect.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -j2 --jobserver-auth=fifo:/tmp//GMfifo19976 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:47:54: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] 47 | CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:33: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here 77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer | ^~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:52:22: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] 52 | CThreadedServer& m_Server; // NCBI_FAKE_WARNING | ^~~~~~~~ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:33: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here 77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer | ^~~~~~~~~~~~~~~ gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server_monitor.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connection_pool.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server.cpp -o server.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xthrserv.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -C services -j2 --jobserver-auth=fifo:/tmp//GMfifo18044 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test/Makefile gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -j2 --jobserver-auth=fifo:/tmp//GMfifo29926 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j2 --jobserver-auth=fifo:/tmp//GMfifo29926 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j2 --jobserver-auth=fifo:/tmp//GMfifo29926 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -j2 --jobserver-auth=fifo:/tmp//GMfifo29926 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j2 --jobserver-auth=fifo:/tmp//GMfifo29926 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j2 --jobserver-auth=fifo:/tmp//GMfifo29926 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -j2 --jobserver-auth=fifo:/tmp//GMfifo29926 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_globals.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_search.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/util.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_globals.cpp -o grid_globals.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp -o grid_rw_impl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/remote_app.cpp -o remote_app.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp -o srv_connections.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp -o netservice_api.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_params.cpp -o netservice_params.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp -o netschedule_api_submitter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_executor.cpp -o netschedule_api_executor.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_reader.cpp -o netschedule_api_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_key.cpp -o netschedule_key.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_key.cpp -o netcache_key.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_params.cpp -o netcache_params.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api.cpp -o netcache_api.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_admin.cpp -o netcache_api_admin.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_search.cpp -o netcache_search.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/util.cpp -o util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/clparser.cpp -o clparser.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage.cpp -o netstorage.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnserv.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j2 --jobserver-auth=fifo:/tmp//GMfifo29926 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp /bin/rm -f libncbi_xcache_netcache-dll.so .libncbi_xcache_netcache-dll.so.stamp ar cr libncbi_xcache_netcache.a neticache_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -shared -o libncbi_xcache_netcache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -fPIC neticache_client.o -Wl,-rpath-link,/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm -lpthread /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a /bin/ln -f .ncbi_xcache_netcache.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.so /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache-dll.so /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.so /bin/ln -f .ncbi_xcache_netcache-dll.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j2 --jobserver-auth=fifo:/tmp//GMfifo29926 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/blob_storage_netcache.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xblobstorage_netcache.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo2034 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -C ext -j2 --jobserver-auth=fifo:/tmp//GMfifo18044 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test/Makefile gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -j2 --jobserver-auth=fifo:/tmp//GMfifo13476 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -j2 --jobserver-auth=fifo:/tmp//GMfifo13476 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -j2 --jobserver-auth=fifo:/tmp//GMfifo13476 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -j2 --jobserver-auth=fifo:/tmp//GMfifo13476 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -j2 --jobserver-auth=fifo:/tmp//GMfifo13476 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_crypt.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_ifconf.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_localnet.c. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_ifconf.c -o ncbi_ifconf.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_crypt.c -o ncbi_crypt.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb.c -o ncbi_dblb.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_localnet.c -o ncbi_localnet.o /bin/rm -f libconnext.a .libconnext.a.stamp ar cr libconnext.a ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_localnet.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnext.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnext.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnext.a /bin/ln -f .connext.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connext.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -j2 --jobserver-auth=fifo:/tmp//GMfifo13476 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp: In member function 'virtual void ncbi::CDBLB_ServiceMapper::GetServerOptions(const string&, ncbi::IDBServiceMapper::TOptions*)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp:336:33: warning: taking address of packed member of 'SLBSM_HostLoad' may result in an unaligned pointer value [-Waddress-of-packed-member] 336 | HINFO_Status(hinfo, &load.status); | ^~~~~~~~~~~~ gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp -o ncbi_dblb_svcmapper.o /bin/rm -f libxconnext.a .libxconnext.a.stamp ar cr libxconnext.a ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_localnet.o ncbi_dblb_svcmapper.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnext.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnext.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnext.a /bin/ln -f .xconnext.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnext.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo21969 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo18044 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test' gmake[2]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -C cgi -j2 --jobserver-auth=fifo:/tmp//GMfifo7917 all_r || exit 5 gmake[2]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[2]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test/Makefile gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -j2 --jobserver-auth=fifo:/tmp//GMfifo4590 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -j2 --jobserver-auth=fifo:/tmp//GMfifo4590 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -j2 --jobserver-auth=fifo:/tmp//GMfifo4590 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -j2 --jobserver-auth=fifo:/tmp//GMfifo4590 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -j2 --jobserver-auth=fifo:/tmp//GMfifo4590 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgi.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgictx.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgir.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbires.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ref_args.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_run.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_util.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_serial.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_session.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_exception.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp_cached.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_entry_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/user_agent.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcgi.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcgi.a /bin/ln -f .xcgi.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcgi.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -j2 --jobserver-auth=fifo:/tmp//GMfifo4590 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/fcgi_run.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_XFCGI_EXPORTS -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxfcgi.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xfcgi.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo7998 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test' gmake[2]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -C html -j2 --jobserver-auth=fifo:/tmp//GMfifo7917 all_r || exit 5 gmake[2]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[2]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo/Makefile gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -j2 --jobserver-auth=fifo:/tmp//GMfifo25359 export-headers gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -j2 --jobserver-auth=fifo:/tmp//GMfifo25359 flag-stamps gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -j2 --jobserver-auth=fifo:/tmp//GMfifo25359 all gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/node.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/htmlhelper.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/page.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/pager.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/selection.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/components.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/commentdiag.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/indentstream.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html_exception.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/writer_htmlenc.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/node.cpp -o node.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html.cpp -o html.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/page.cpp -o page.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/pager.cpp -o pager.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/selection.cpp -o selection.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/components.cpp -o components.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/indentstream.cpp -o indentstream.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html_exception.cpp -o html_exception.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxhtml.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxhtml.a /bin/ln -f .xhtml.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xhtml.dep gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo25359 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test' /usr/pkg/bin/gmake -C demo -j2 --jobserver-auth=fifo:/tmp//GMfifo25359 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo' gmake[2]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -C build-system -j2 --jobserver-auth=fifo:/tmp//GMfifo7917 all_r || exit 5 gmake[2]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system' gmake[2]: warning: -j2 forced in submake: resetting jobserver mode. /usr/pkg/bin/gmake -C helpers -j2 --jobserver-auth=fifo:/tmp//GMfifo16991 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' /usr/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `flag-stamps'. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' /usr/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `all'. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' /usr/pkg/bin/gmake -C project_tree_builder -j2 --jobserver-auth=fifo:/tmp//GMfifo16991 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -j2 --jobserver-auth=fifo:/tmp//GMfifo1947 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -j2 --jobserver-auth=fifo:/tmp//GMfifo1947 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath-link,/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/usr/pkg/lib -lpcre -lm -lpthread -o project_tree_builder strip project_tree_builder /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/project_tree_builder gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/pkg/bin/gmake -C msbuild -j2 --jobserver-auth=fifo:/tmp//GMfifo1947 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project msbuild due to unmet requirements: MSWin gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -j2 --jobserver-auth=fifo:/tmp//GMfifo19436 mark-as-disabled gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[2]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system' /usr/pkg/bin/gmake -C serial -j2 --jobserver-auth=fifo:/tmp//GMfifo7917 all_r || exit 5 gmake[2]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[2]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT soap/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test/Makefile gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -j2 --jobserver-auth=fifo:/tmp//GMfifo16088 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -j2 --jobserver-auth=fifo:/tmp//GMfifo16088 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -j2 --jobserver-auth=fifo:/tmp//GMfifo16088 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -j2 --jobserver-auth=fifo:/tmp//GMfifo16088 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -j2 --jobserver-auth=fifo:/tmp//GMfifo16088 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdata.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdatakey.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeinfo.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectinfo.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectiter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectio.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeref.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typemap.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/enumerated.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/ptrinfo.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/autoptrinfo.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/continfo.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stltypes.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/memberid.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/memberlist.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfob.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/member.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfo.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/variant.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choice.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choiceptr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/aliasinfo.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objcopy.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/iterator.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serial.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/delaybuf.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pack_string.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/exception.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objhook.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objlist.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objstack.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasn.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasn.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasnb.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasnb.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrxml.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrxml.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrjson.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrjson.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serializable.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialobject.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pathhook.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/rpcbase.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdata.cpp -o hookdata.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectiter.cpp -o objectiter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectio.cpp -o objectio.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeref.cpp -o typeref.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typemap.cpp -o typemap.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp -o stdtypes.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/enumerated.cpp -o enumerated.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/continfo.cpp -o continfo.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stltypes.cpp -o stltypes.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/memberid.cpp -o memberid.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/memberlist.cpp -o memberlist.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/item.cpp -o item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfob.cpp -o classinfob.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/member.cpp -o member.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfo.cpp -o classinfo.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/variant.cpp -o variant.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choice.cpp -o choice.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choiceptr.cpp -o choiceptr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/aliasinfo.cpp -o aliasinfo.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistr.cpp -o objistr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostr.cpp -o objostr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objcopy.cpp -o objcopy.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/iterator.cpp -o iterator.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serial.cpp -o serial.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/delaybuf.cpp -o delaybuf.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pack_string.cpp -o pack_string.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/exception.cpp -o exception.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objhook.cpp -o objhook.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objlist.cpp -o objlist.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objstack.cpp -o objstack.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasn.cpp -o objostrasn.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasn.cpp -o objistrasn.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasnb.cpp -o objostrasnb.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrxml.cpp -o objostrxml.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrxml.cpp -o objistrxml.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrjson.cpp -o objostrjson.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrjson.cpp -o objistrjson.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serializable.cpp -o serializable.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialobject.cpp -o serialobject.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pathhook.cpp -o pathhook.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xser.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -j2 --jobserver-auth=fifo:/tmp//GMfifo16088 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialasn.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/asntypes.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/asntypes.cpp -o asntypes.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcser.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcser.a /bin/ln -f .xcser.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcser.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -C datatool -j2 --jobserver-auth=fifo:/tmp//GMfifo22122 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool TMPL=datatool -j2 --jobserver-auth=fifo:/tmp//GMfifo26119 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool TMPL=datatool -j2 --jobserver-auth=fifo:/tmp//GMfifo26119 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/datatool.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/type.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/namespace.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/statictype.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/enumtype.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/reftype.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/unitype.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/blocktype.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choicetype.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/typestr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/ptrstr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/stdstr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/classstr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/enumstr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/stlstr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choicestr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choiceptrstr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/value.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/mcontainer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/module.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/moduleset.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/generate.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/filecode.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/code.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/fileutil.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/alexer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/aparser.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/parser.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/lexer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/exceptions.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/comments.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/srcutil.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdaux.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdlexer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdparser.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/rpcgen.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/aliasstr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdlexer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdparser.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdllexer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdlparser.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdlstr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdlexer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdparser.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_merger.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_node.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/type.cpp -o type.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/namespace.cpp -o namespace.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/statictype.cpp -o statictype.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/reftype.cpp -o reftype.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/unitype.cpp -o unitype.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/typestr.cpp -o typestr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/classstr.cpp -o classstr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/enumstr.cpp -o enumstr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/stlstr.cpp -o stlstr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choicestr.cpp -o choicestr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choiceptrstr.cpp -o choiceptrstr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/value.cpp -o value.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/mcontainer.cpp -o mcontainer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/module.cpp -o module.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/moduleset.cpp -o moduleset.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/generate.cpp -o generate.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/filecode.cpp -o filecode.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/code.cpp -o code.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/fileutil.cpp -o fileutil.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/alexer.cpp -o alexer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/aparser.cpp -o aparser.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/parser.cpp -o parser.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/lexer.cpp -o lexer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/exceptions.cpp -o exceptions.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/comments.cpp -o comments.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/srcutil.cpp -o srcutil.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdaux.cpp -o dtdaux.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdlexer.cpp -o dtdlexer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdparser.cpp -o dtdparser.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdlexer.cpp -o jsdlexer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdparser.cpp -o jsdparser.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath-link,/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool strip datatool /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f datatool /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo22122 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test' /usr/pkg/bin/gmake -C soap -j2 --jobserver-auth=fifo:/tmp//GMfifo22122 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap' /usr/pkg/bin/gmake -C grpc_integration -j2 --jobserver-auth=fifo:/tmp//GMfifo22122 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j2 --jobserver-auth=fifo:/tmp//GMfifo236 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j2 --jobserver-auth=fifo:/tmp//GMfifo236 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j2 --jobserver-auth=fifo:/tmp//GMfifo236 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration/grpc_integration.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration/grpc_integration.cpp -o grpc_integration.o /bin/rm -f libgrpc_integration.a .libgrpc_integration.a.stamp ar cr libgrpc_integration.a grpc_integration.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgrpc_integration.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgrpc_integration.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgrpc_integration.a /bin/ln -f .grpc_integration.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.grpc_integration.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[2]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -C db -j2 --jobserver-auth=fifo:/tmp//GMfifo7917 all_r || exit 5 gmake[2]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db' gmake[2]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT bdb/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb/Makefile /usr/pkg/bin/gmake -C sqlite -j2 --jobserver-auth=fifo:/tmp//GMfifo4929 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j2 --jobserver-auth=fifo:/tmp//GMfifo26236 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j2 --jobserver-auth=fifo:/tmp//GMfifo26236 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j2 --jobserver-auth=fifo:/tmp//GMfifo26236 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o /bin/rm -f libsqlitewrapp.a .libsqlitewrapp.a.stamp ar cr libsqlitewrapp.a sqlitewrapp.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsqlitewrapp.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsqlitewrapp.a /bin/ln -f .sqlitewrapp.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.sqlitewrapp.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/pkg/bin/gmake -C bdb -j2 --jobserver-auth=fifo:/tmp//GMfifo4929 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb' gmake[2]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db' /usr/pkg/bin/gmake -C dbapi -j2 --jobserver-auth=fifo:/tmp//GMfifo7917 all_r || exit 5 gmake[2]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[2]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in` /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT simple/Makefile test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lang_bind/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test/Makefile gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -j2 --jobserver-auth=fifo:/tmp//GMfifo19770 export-headers gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -j2 --jobserver-auth=fifo:/tmp//GMfifo19770 flag-stamps gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -j2 --jobserver-auth=fifo:/tmp//GMfifo19770 all gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/variant.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/variant.cpp -o variant.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/u/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:119:35: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] 119 | buf_size); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:35: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:269:27: note: declared here 269 | virtual CNcbiOstream& GetBlobOStream(size_t blob_size, | ^~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:127:35: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] 127 | buf_size); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:35: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:294:27: note: declared here 294 | virtual CNcbiOstream& GetBlobOStream(IConnection *conn, | ^~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:157:35: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] 157 | buf_size); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:35: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here 596 | virtual CNcbiOstream& GetBlobOStream(unsigned int col, | ^~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:164:72: warning: 'virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::TBlobOStreamFlags)' is deprecated [-Wdeprecated-declarations] 164 | (log_it == eDisableLog) ? fBOS_SkipLogging : 0); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:35: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:621:22: note: declared here 621 | virtual IWriter* GetBlobWriter(unsigned int col, | ^~~~~~~~~~~~~ sr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'void ncbi::CResultSet::x_CacheItems(int)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:261:59: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::CDB_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations] 261 | var.SetBlobDescriptor(m_rs->GetBlobDescriptor()); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver_mgr.hpp:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:40, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.hpp:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:37: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:542:31: note: declared here 542 | virtual I_BlobDescriptor* GetBlobDescriptor(); | ^~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:329:66: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] 329 | return IResultSet::GetBlobOStream(blob_size, log_it, buf_size); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.hpp:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:37: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:274:27: note: declared here 274 | virtual CNcbiOstream& GetBlobOStream(size_t blob_size, | ^~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp: At global scope: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:330:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] 330 | } | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:325:15: note: declared here 325 | CNcbiOstream& CResultSet::GetBlobOStream(size_t blob_size, | ^~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:337:72: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] 337 | return IResultSet::GetBlobOStream(conn, blob_size, log_it, buf_size); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.hpp:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:37: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:300:27: note: declared here 300 | virtual CNcbiOstream& GetBlobOStream(IConnection *conn, | ^~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp: At global scope: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:338:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] 338 | } | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:332:15: note: declared here 332 | CNcbiOstream& CResultSet::GetBlobOStream(IConnection *conn, | ^~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:355:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] 355 | } | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:348:15: note: declared here 348 | CNcbiOstream& CResultSet::GetBlobOStream(size_t blob_size, | ^~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:365:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] 365 | } | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:357:15: note: declared here 357 | CNcbiOstream& CResultSet::GetBlobOStream(IConnection *conn, | ^~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'ncbi::CNcbiOstream& ncbi::CResultSet::xGetBlobOStream(ncbi::CDB_Connection*, size_t, ncbi::TBlobOStreamFlags, size_t, bool)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:384:63: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::CDB_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations] 384 | unique_ptr desc(m_rs->GetBlobDescriptor()); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver_mgr.hpp:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:40, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.hpp:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:37: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:542:31: note: declared here 542 | virtual I_BlobDescriptor* GetBlobDescriptor(); | ^~~~~~~~~~~~~~~~~ ++/src/dbapi/stmt_impl.cpp -o stmt_impl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.1/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp: In constructor 'ncbi::CBlobOStream::CBlobOStream(ncbi::CDB_CursorCmd*, unsigned int, size_t, std::streamsize, ncbi::TBlobOStreamFlags, ncbi::CDB_Connection*)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp:86:69: warning: 'virtual ncbi::CDB_SendDataCmd* ncbi::CDB_CursorCmd::SendDataCmd(unsigned int, size_t, bool, bool)' is deprecated [-Wdeprecated-declarations] 86 | (flags & fBOS_SkipLogging) == 0)); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver_mgr.hpp:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:40, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.hpp:36, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.hpp:36, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp:34: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:891:30: note: declared here 891 | virtual CDB_SendDataCmd* SendDataCmd(unsigned int item_num, size_t size, | ^~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:122:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] 122 | } | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:106:15: note: declared here 106 | CNcbiOstream& CCursor::GetBlobOStream(unsigned int col, | ^~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:129:68: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] 129 | return ICursor::GetBlobOStream(col, blob_size, log_it, buf_size); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.hpp:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:35: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:602:27: note: declared here 602 | virtual CNcbiOstream& GetBlobOStream(unsigned int col, | ^~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp: At global scope: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:130:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] 130 | } | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:124:15: note: declared here 124 | CNcbiOstream& CCursor::GetBlobOStream(unsigned int col, | ^~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:145:1: warning: 'virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::TBlobOStreamFlags)' is deprecated [-Wdeprecated-declarations] 145 | } | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:132:10: note: declared here 132 | IWriter* CCursor::GetBlobWriter(unsigned int col, | ^~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp: In member function 'virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:151:57: warning: 'virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)' is deprecated [-Wdeprecated-declarations] 151 | return ICursor::GetBlobWriter(col, blob_size, log_it); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.hpp:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:35: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:626:22: note: declared here 626 | virtual IWriter* GetBlobWriter(unsigned int col, | ^~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp: At global scope: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:152:1: warning: 'virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)' is deprecated [-Wdeprecated-declarations] 152 | } | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:147:10: note: declared here 147 | IWriter* CCursor::GetBlobWriter(unsigned int col, | ^~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp: In constructor 'ncbi::CxBlobWriter::CxBlobWriter(ncbi::CDB_CursorCmd*, unsigned int, size_t, ncbi::TBlobOStreamFlags)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp:89:68: warning: 'virtual ncbi::CDB_SendDataCmd* ncbi::CDB_CursorCmd::SendDataCmd(unsigned int, size_t, bool, bool)' is deprecated [-Wdeprecated-declarations] 89 | (flags & fBOS_SkipLogging) == 0); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver_mgr.hpp:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:40, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.hpp:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp:35: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:891:30: note: declared here 891 | virtual CDB_SendDataCmd* SendDataCmd(unsigned int item_num, size_t size, | ^~~~~~~~~~~ 2 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi.dep gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -C driver -j2 --jobserver-auth=fifo:/tmp//GMfifo19770 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT util/Makefile test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ctlib/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ftds100/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ftds-default/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT mysql/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT samples/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j2 --jobserver-auth=fifo:/tmp//GMfifo399 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j2 --jobserver-auth=fifo:/tmp//GMfifo399 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j2 --jobserver-auth=fifo:/tmp//GMfifo399 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/handle_stack.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blas/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp: In member function 'bool ncbi::I_CursorCmd::UpdateTextImage(unsigned int, ncbi::CDB_Stream&, bool)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp:248:45: warning: 'virtual bool ncbi::I_CursorCmd::UpdateBlob(unsigned int, ncbi::CDB_Stream&, bool)' is deprecated [-Wdeprecated-declarations] 248 | return UpdateBlob(item_num, data, log_it); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:36, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp:34: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/interfaces.hpp:561:18: note: declared here 561 | virtual bool UpdateBlob(unsigned int item_num, CDB_Stream& data, | ^~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp: In member function 'ncbi::I_BlobDescriptor* ncbi::I_Result::GetImageOrTextDescriptor()': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp:276:30: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::I_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations] 276 | return GetBlobDescriptor(); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:36, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp:34: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/interfaces.hpp:769:31: note: declared here 769 | virtual I_BlobDescriptor* GetBlobDescriptor(void) = 0; | ^~~~~~~~~~~~~~~~~ t+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/numeric_convert.cpp -o numeric_convert.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/parameters.cpp -o parameters.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/exception.cpp -o exception.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp -o interfaces.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/public.cpp -o public.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/types.cpp -o types.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/memory_store.cpp -o memory_store.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/pointer_pot.cpp -o pointer_pot.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/driver_mgr.cpp -o driver_mgr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp -o dbapi_driver_conn_mgr.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp -o dbapi_conn_factory.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp -o dbapi_svc_mapper.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp -o dbapi_driver_utils.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp -o dbapi_impl_cmd.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp -o dbapi_impl_connection.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp -o dbapi_impl_context.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp -o dbapi_impl_result.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp -o dbapi_driver_conn_params.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp -o dbapi_driver_exception_storage.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp /bin/rm -f libdbapi_driver-dll.so .libdbapi_driver-dll.so.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -shared -o libdbapi_driver-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -fPIC handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -Wl,-rpath-link,/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lm -lpthread /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.a /bin/ln -f .dbapi_driver.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.so /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver-dll.so /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.so /bin/ln -f .dbapi_driver-dll.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -C util -j2 --jobserver-auth=fifo:/tmp//GMfifo399 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util' /usr/pkg/bin/gmake -C ctlib -j2 --jobserver-auth=fifo:/tmp//GMfifo399 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /usr/pkg/bin/gmake -C ftds100 -j2 --jobserver-auth=fifo:/tmp//GMfifo399 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' /usr/pkg/bin/gmake -C ftds-default -j2 --jobserver-auth=fifo:/tmp//GMfifo399 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /usr/pkg/bin/gmake -C mysql -j2 --jobserver-auth=fifo:/tmp//GMfifo399 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /usr/pkg/bin/gmake -C odbc -j2 --jobserver-auth=fifo:/tmp//GMfifo399 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -j2 --jobserver-auth=fifo:/tmp//GMfifo15207 mark-as-disabled gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/pkg/bin/gmake -C samples -j2 --jobserver-auth=fifo:/tmp//GMfifo399 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -C simple -j2 --jobserver-auth=fifo:/tmp//GMfifo19770 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple' /usr/pkg/bin/gmake -C lang_bind -j2 --jobserver-auth=fifo:/tmp//GMfifo19770 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo19770 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test' gmake[2]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -C objects -j2 --jobserver-auth=fifo:/tmp//GMfifo7917 all_r || exit 5 gmake[2]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' gmake[2]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/Makefile.sources builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects -j2 --jobserver-auth=fifo:/tmp//GMfifo24952 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102"; export MAKE; \ ( cd $i && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-j2 --jobserver-auth=fifo:/tmp//GMfifo11102" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \ -oc omssa -or objects/omssa -odi -od omssa.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m access.asn -M "" -oA \ -oc access -or objects/access -odi -od access.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd access.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/cgmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... ++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ -oc blast -or objects/blast -odi -od blast.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srgmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... cdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' File blastxml.module not found. Using defaults... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blastxml.asn -M "" -oA \ -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blastxml2.asn -M "" -oA \ -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blastgmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... +/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA \ -oc cdd -or objects/cdd -odi -od cdd.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/Regmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... leaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA \ -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m docsum.asn -M "" -oA \ -oc docsum -or objects/docsum -odi -od docsum.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA \ -oc biotree -or objects/biotree -odi -od biotree.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT=gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. '' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m entrez2.asn -M "" -oA \ -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA \ -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-b[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... last-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m featdef.asn -M "" -oA \ -oc featdef -or objects/featdef -odi -od featdef.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m gbseq.asn -M "" -oA \ -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m general.asn -M "" -oA \ -oc general -or objects/general -odi -od general.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... -src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m insdseq.asn -M "" -oA \ -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m macro.asn -M "" -oA \ -oc macro -or objects/macro -odi -od macro.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/bgmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. iology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medline -or objects/medline -odi -od medline.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mim.asn -M "" -oA \ -oc mim -or objects/mim -odi -od mim.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ -oc mla -or objects/mla -odi -od mla.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ dat[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. atool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA \ -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /hogmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... me/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA \ -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m objprt.asn -M "" -oA \ -oc objprt -or objects/objprt -odi -od objprt.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/sgmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... eq/seq.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA \ -oc proj -or objects/proj -odi -od proj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pub -or objects/pub -odi -od pub.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/bibliogmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... .asn objects/medline/medline.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock/seqblock.asn /home/pbulk/build-disk/biology/ncgmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. bi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ -oc seq -or objects/seq -odi -od seq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... +-src/c++/src/objects/seqalign' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqcode.asn -M "" -oA \ -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objecgmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... ts/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/sgmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... eqfeat/seqfeat' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ -oc submit -or objects/submit -odi -od submit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ datatool: 2.23.2[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. .1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m tinyseq.asn -M "" -oA \ -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA \ -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... \ -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc remap -or objects/remap -odi -od remap.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA \ -oc homologene -or objects/homologene -odi -od homologene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objgmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. ects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. Warning: (810.1) No service name provided for CTrackMgrClient /pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA \ -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objec[2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... ts/trackmgr' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA \ -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m valerr.asn -M "" -oA \ -oc valerr -or objects/valerr -odi -od valerr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/hgmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... ome/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m valid.asn -M "" -oA \ -oc valid -or objects/valid -odi -od valid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo11102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m genesbyloc.asn -M "" -oA \ -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' /usr/pkg/bin/gmake -C general -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test/Makefile cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh general all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo26986 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -j2 --jobserver-auth=fifo:/tmp//GMfifo26986 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -j2 --jobserver-auth=fifo:/tmp//GMfifo26986 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -j2 --jobserver-auth=fifo:/tmp//GMfifo26986 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/uoconv.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general__.cpp -o general__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general___.cpp -o general___.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgeneral.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgeneral.a /bin/ln -f .general.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.general.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo26986 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test' /usr/pkg/bin/gmake -C unit_test -j2 --jobserver-auth=fifo:/tmp//GMfifo26986 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -C biblio -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh biblio all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo5178 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -j2 --jobserver-auth=fifo:/tmp//GMfifo5178 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -j2 --jobserver-auth=fifo:/tmp//GMfifo5178 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -j2 --jobserver-auth=fifo:/tmp//GMfifo5178 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/citation_base.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiblio.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libbiblio.a /bin/ln -f .biblio.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.biblio.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /usr/pkg/bin/gmake -C medline -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh medline all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo17824 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -j2 --jobserver-auth=fifo:/tmp//GMfifo17824 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -j2 --jobserver-auth=fifo:/tmp//GMfifo17824 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -j2 --jobserver-auth=fifo:/tmp//GMfifo17824 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedline.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmedline.a /bin/ln -f .medline.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.medline.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /usr/pkg/bin/gmake -C pub -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pub all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo21206 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -j2 --jobserver-auth=fifo:/tmp//GMfifo21206 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -j2 --jobserver-auth=fifo:/tmp//GMfifo21206 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -j2 --jobserver-auth=fifo:/tmp//GMfifo21206 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpub.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpub.a /bin/ln -f .pub.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pub.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /usr/pkg/bin/gmake -C seqcode -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqcode all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo23530 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -j2 --jobserver-auth=fifo:/tmp//GMfifo23530 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -j2 --jobserver-auth=fifo:/tmp//GMfifo23530 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -j2 --jobserver-auth=fifo:/tmp//GMfifo23530 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqcode.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqcode.a /bin/ln -f .seqcode.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqcode.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /usr/pkg/bin/gmake -C seq -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test/Makefile gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/Makefile.sources builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -j2 --jobserver-auth=fifo:/tmp//GMfifo21653 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo8478"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../$x ; \ (cd $d && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo8478 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo8478 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo8478 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo8478 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo8478 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build-disgmake[6]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... k/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo8478 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seq all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo9734 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock/seqblock.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -j2 --jobserver-auth=fifo:/tmp//GMfifo9734 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -j2 --jobserver-auth=fifo:/tmp//GMfifo9734 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -j2 --jobserver-auth=fifo:/tmp//GMfifo9734 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq__.cpp. Updating dependency information for seqalign__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for seqblock___.cpp. Updating dependency information for seqfeat___.cpp. Updating dependency information for seqloc___.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/so_map.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq__.cpp -o seq__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaIn file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:3, from seqalign__.cpp:1: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp: In member function 'ncbi::objects::CDense_seg_Base::TDim ncbi::objects::CDense_seg::CheckNumRows() const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:92:13: warning: comparison of integer expressions of different signedness: 'const TDim' {aka 'const int'} and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 92 | if (dim != GetIds().size()) { | ~~~~^~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp: In member function 'ncbi::objects::CDense_seg_Base::TNumseg ncbi::objects::CDense_seg::CheckNumSegs() const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:117:21: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'const TDim' {aka 'const int'} [-Wsign-compare] 117 | if (lens.size() != numsegs) { | ~~~~~~~~~~~~^~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:127:42: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'const TDim' {aka 'const int'} [-Wsign-compare] 127 | if (widths.size() && widths.size() != numrows) { | ~~~~~~~~~~~~~~^~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp: In member function 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:1018:28: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'ncbi::objects::CDense_seg_Base::TDim' {aka 'int'} [-Wsign-compare] 1018 | row_i < numrows; ++row_i, ++tmp_idx) { | ~~~~~~^~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp: In member function 'ncbi::CRef ncbi::objects::CDense_seg::FillUnaligned() const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:1214:32: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CDense_seg_Base::TNumseg' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1214 | for ( ; extra_seg < extra_segs.size() && extra_segs[extra_seg] == seg; ++new_seg, ++extra_seg) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1382:69: warning: 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] 1382 | SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:3, from seqalign__.cpp:1: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:901:6: note: declared here 901 | void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, | ^~~~~~~~~~ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1386:62: warning: 'void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] 1386 | (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:42, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here 79 | NCBI_DEPRECATED void RemapToLoc(TDim row, | ^~~~~~~~~~ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1391:68: warning: 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] 1391 | (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1365:6: note: declared here 1365 | void CSeq_align::RemapToLoc(TDim row, | ^~~~~~~~~~ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp: In function 'ncbi::TSeqPos ncbi::objects::s_GetAlignmentLength(const ncbi::objects::CSeq_align&, const ncbi::CRangeCollection&, bool)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1893:52: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CDense_seg_Base::TNumseg' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1893 | for (CDense_seg::TNumseg i = 0; i < ds.GetLens().size(); | ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42, from seqfeat__.cpp:1: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function 'ncbi::CTempString ncbi::objects::s_AaName(int)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 124 | if (idx > 0 && idx < ArraySize(sc_TrnaList)) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function 'void ncbi::objects::s_SetTrnaProduct(ncbi::objects::CTrna_ext&, const string&, std::string&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:186:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 186 | for (int i = 0; i < ArraySize(sc_TrnaList); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48, from seqfeat__.cpp:1: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In function 'ncbi::objects::CCountries::EStateCleanup ncbi::objects::s_DoUSAStateCleanup(std::string&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:4481:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4481 | for ( int j = 0; j < components.size(); j++ ) { | ~~^~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:4518:16: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 4518 | if ( j == match) continue; | ~~^~~~~~~~ seMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e seqalign__.cpp -o seqalign__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e seqblock__.cpp -o seqblock__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e seqfeat__.cpp -o seqfeat__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e seqloc__.cpp -o seqloc__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e seqres__.cpp -o seqres__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e seqtable__.cpp -o seqtable__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq___.cpp -o seq___.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e seqalign___.cpp -o seqalign___.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e seqblock___.cpp -o seqblock___.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e seqfeat___.cpp -o seqfeat___.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::CRef > ncbi::objects::CSeqportUtil_implementation::InitFastIupacnaNcbi2na()': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1681:16: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 1681 | if((ch >= start_at) && (ch < (start_at + size))) | ~~~^~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1681:36: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 1681 | if((ch >= start_at) && (ch < (start_at + size))) | ~~~^~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::CRef > ncbi::objects::CSeqportUtil_implementation::InitFastIupacnaNcbi4na()': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1704:16: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 1704 | if((ch >= start_at) && (ch < (start_at + size))) | ~~~^~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1704:36: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 1704 | if((ch >= start_at) && (ch < (start_at + size))) | ~~~^~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::CRef > ncbi::objects::CSeqportUtil_implementation::InitFastNcbi4naNcbi2na()': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1731:20: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 1731 | if((n1 >= start_at) && (n1 < start_at + size)) | ~~~^~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1731:40: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 1731 | if((n1 >= start_at) && (n1 < start_at + size)) | ~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1735:20: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 1735 | if((n2 >= start_at) && (n2 < start_at + size)) | ~~~^~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1735:40: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 1735 | if((n2 >= start_at) && (n2 < start_at + size)) | ~~~^~~~~~~~~~~~~~~~~ /build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e seqloc___.cpp -o seqloc___.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e seqres___.cpp -o seqres___.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e seqtable___.cpp -o seqtable___.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /home/p/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp: In member function 'virtual void ncbi::objects::CSeq_id_Giim_Tree::FindMatchStr(const string&, ncbi::objects::CSeq_id_Which_Tree::TSeq_id_MatchList&) const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp:2965:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] 2965 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:1506:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1506 | if ( row_n == p_row ) { | ~~~~~~^~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstDisc(ncbi::CRef&) const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:1652:16: warning: catching polymorphic type 'class ncbi::objects::CAnnotMapperException' by value [-Wcatch-value=] 1652 | catch (CAnnotMapperException) { | ^~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'ssize_t ncbi::objects::CSeq_align_Mapper_Base::x_GetPartialDenseg(ncbi::CRef&, size_t) const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:2618:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 2618 | for (int s = 0; s < start_seg && start_seg_it != m_Segs.end(); | ~~^~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_ConvToDstDisc(ncbi::CRef&) const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:2801:30: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'std::__cxx11::list::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2801 | while (seg >= 0 && seg < m_Segs.size()) { | ~~~~^~~~~~~~~~~~~~~ bulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/so_map.cpp -o so_map.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seq.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo9734 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test' /usr/pkg/bin/gmake -C unit_test -j2 --jobserver-auth=fifo:/tmp//GMfifo9734 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -C seqset -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqset all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo25228 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -j2 --jobserver-auth=fifo:/tmp//GMfifo25228 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -j2 --jobserver-auth=fifo:/tmp//GMfifo25228 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -j2 --jobserver-auth=fifo:/tmp//GMfifo25228 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/gb_release_file.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqset.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo25228 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -C submit -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh submit all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo24461 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -j2 --jobserver-auth=fifo:/tmp//GMfifo24461 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -j2 --jobserver-auth=fifo:/tmp//GMfifo24461 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -j2 --jobserver-auth=fifo:/tmp//GMfifo24461 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsubmit.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsubmit.a /bin/ln -f .submit.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.submit.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /usr/pkg/bin/gmake -C seqedit -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqedit all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo2504 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -j2 --jobserver-auth=fifo:/tmp//GMfifo2504 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -j2 --jobserver-auth=fifo:/tmp//GMfifo2504 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -j2 --jobserver-auth=fifo:/tmp//GMfifo2504 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqedit.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /usr/pkg/bin/gmake -C seqsplit -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqsplit all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo15249 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -j2 --jobserver-auth=fifo:/tmp//GMfifo15249 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -j2 --jobserver-auth=fifo:/tmp//GMfifo15249 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -j2 --jobserver-auth=fifo:/tmp//GMfifo15249 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqsplit.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqsplit.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/pkg/bin/gmake -C id1 -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test/Makefile cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh id1 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo25441 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -j2 --jobserver-auth=fifo:/tmp//GMfifo25441 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -j2 --jobserver-auth=fifo:/tmp//GMfifo25441 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -j2 --jobserver-auth=fifo:/tmp//GMfifo25441 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -j2 --jobserver-auth=fifo:/tmp//GMfifo25441 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -j2 --jobserver-auth=fifo:/tmp//GMfifo25441 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid1.a /bin/ln -f .id1.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id1.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -j2 --jobserver-auth=fifo:/tmp//GMfifo25441 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client_.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1cli.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid1cli.a /bin/ln -f .id1cli.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id1cli.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo2319 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -C id2 -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh id2 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo15171 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -j2 --jobserver-auth=fifo:/tmp//GMfifo15171 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -j2 --jobserver-auth=fifo:/tmp//GMfifo15171 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -j2 --jobserver-auth=fifo:/tmp//GMfifo15171 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -j2 --jobserver-auth=fifo:/tmp//GMfifo15171 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -j2 --jobserver-auth=fifo:/tmp//GMfifo15171 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2.a /bin/ln -f .id2.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -j2 --jobserver-auth=fifo:/tmp//GMfifo15171 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client_.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2cli.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -C entrez2 -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh entrez2 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo13225 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -j2 --jobserver-auth=fifo:/tmp//GMfifo13225 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j2 --jobserver-auth=fifo:/tmp//GMfifo13225 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -j2 --jobserver-auth=fifo:/tmp//GMfifo13225 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j2 --jobserver-auth=fifo:/tmp//GMfifo13225 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -j2 --jobserver-auth=fifo:/tmp//GMfifo13225 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrez2.a /bin/ln -f .entrez2.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrez2.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j2 --jobserver-auth=fifo:/tmp//GMfifo13225 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2cli.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrez2cli.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -C demo -j2 --jobserver-auth=fifo:/tmp//GMfifo12833 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -C pubmed -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pubmed all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo19695 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -j2 --jobserver-auth=fifo:/tmp//GMfifo19695 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -j2 --jobserver-auth=fifo:/tmp//GMfifo19695 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -j2 --jobserver-auth=fifo:/tmp//GMfifo19695 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpubmed.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpubmed.a /bin/ln -f .pubmed.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pubmed.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /usr/pkg/bin/gmake -C medlars -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh medlars all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo1842 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -j2 --jobserver-auth=fifo:/tmp//GMfifo1842 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -j2 --jobserver-auth=fifo:/tmp//GMfifo1842 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -j2 --jobserver-auth=fifo:/tmp//GMfifo1842 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedlars.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmedlars.a /bin/ln -f .medlars.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.medlars.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /usr/pkg/bin/gmake -C mla -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh mla all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo12006 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -j2 --jobserver-auth=fifo:/tmp//GMfifo12006 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -j2 --jobserver-auth=fifo:/tmp//GMfifo12006 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -j2 --jobserver-auth=fifo:/tmp//GMfifo12006 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -j2 --jobserver-auth=fifo:/tmp//GMfifo12006 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -j2 --jobserver-auth=fifo:/tmp//GMfifo12006 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmla.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmla.a /bin/ln -f .mla.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mla.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -j2 --jobserver-auth=fifo:/tmp//GMfifo12006 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client_.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmlacli.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmlacli.a /bin/ln -f .mlacli.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mlacli.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -C proj -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh proj all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo19683 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -j2 --jobserver-auth=fifo:/tmp//GMfifo19683 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -j2 --jobserver-auth=fifo:/tmp//GMfifo19683 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -j2 --jobserver-auth=fifo:/tmp//GMfifo19683 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj___.cpp -o proj___.o /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libproj.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libproj.a /bin/ln -f .proj.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.proj.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /usr/pkg/bin/gmake -C scoremat -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh scoremat all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo20354 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -j2 --jobserver-auth=fifo:/tmp//GMfifo20354 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -j2 --jobserver-auth=fifo:/tmp//GMfifo20354 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -j2 --jobserver-auth=fifo:/tmp//GMfifo20354 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.scoremat.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /usr/pkg/bin/gmake -C blast -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blast all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo21867 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -j2 --jobserver-auth=fifo:/tmp//GMfifo21867 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -j2 --jobserver-auth=fifo:/tmp//GMfifo21867 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -j2 --jobserver-auth=fifo:/tmp//GMfifo21867 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -j2 --jobserver-auth=fifo:/tmp//GMfifo21867 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -j2 --jobserver-auth=fifo:/tmp//GMfifo21867 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/names.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xnetblast.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -j2 --jobserver-auth=fifo:/tmp//GMfifo21867 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient_.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblastcli.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xnetblastcli.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -C blastdb -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastdb all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo18256 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -j2 --jobserver-auth=fifo:/tmp//GMfifo18256 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -j2 --jobserver-auth=fifo:/tmp//GMfifo18256 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -j2 --jobserver-auth=fifo:/tmp//GMfifo18256 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastdb.a /bin/ln -f .blastdb.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastdb.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /usr/pkg/bin/gmake -C blastxml -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastxml all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo14763 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -j2 --jobserver-auth=fifo:/tmp//GMfifo14763 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -j2 --jobserver-auth=fifo:/tmp//GMfifo14763 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -j2 --jobserver-auth=fifo:/tmp//GMfifo14763 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastxml.a /bin/ln -f .blastxml.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastxml.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /usr/pkg/bin/gmake -C blastxml2 -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo3652 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j2 --jobserver-auth=fifo:/tmp//GMfifo3652 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j2 --jobserver-auth=fifo:/tmp//GMfifo3652 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j2 --jobserver-auth=fifo:/tmp//GMfifo3652 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml2.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastxml2.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/pkg/bin/gmake -C mmdb -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/Makefile.sources builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -j2 --jobserver-auth=fifo:/tmp//GMfifo25918 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo2981"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo2981 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo2981 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo2981 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbigmake[6]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... -blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -j2 --jobserver-auth=fifo:/tmp//GMfifo490 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -j2 --jobserver-auth=fifo:/tmp//GMfifo490 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -j2 --jobserver-auth=fifo:/tmp//GMfifo490 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' Updating dependency information for mmdb1__.cpp. Updating dependency information for mmdb2__.cpp. Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb3___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e mmdb1__.cpp -o mmdb1__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e mmdb2__.cpp -o mmdb2__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e mmdb3__.cpp -o mmdb3__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e mmdb1___.cpp -o mmdb1___.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e mmdb2___.cpp -o mmdb2___.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mmdb.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -C cn3d -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh cn3d all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo27251 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -j2 --jobserver-auth=fifo:/tmp//GMfifo27251 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -j2 --jobserver-auth=fifo:/tmp//GMfifo27251 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -j2 --jobserver-auth=fifo:/tmp//GMfifo27251 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.cn3d.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /usr/pkg/bin/gmake -C cdd -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh cdd all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo7102 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -j2 --jobserver-auth=fifo:/tmp//GMfifo7102 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -j2 --jobserver-auth=fifo:/tmp//GMfifo7102 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -j2 --jobserver-auth=fifo:/tmp//GMfifo7102 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.cdd.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /usr/pkg/bin/gmake -C ncbimime -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh ncbimime all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo15006 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -j2 --jobserver-auth=fifo:/tmp//GMfifo15006 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -j2 --jobserver-auth=fifo:/tmp//GMfifo15006 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -j2 --jobserver-auth=fifo:/tmp//GMfifo15006 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo15006 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -C pcsubstance -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo21979 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j2 --jobserver-auth=fifo:/tmp//GMfifo21979 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j2 --jobserver-auth=fifo:/tmp//GMfifo21979 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j2 --jobserver-auth=fifo:/tmp//GMfifo21979 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcsubstance.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcsubstance.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/pkg/bin/gmake -C pcassay -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcassay all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo17477 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -j2 --jobserver-auth=fifo:/tmp//GMfifo17477 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -j2 --jobserver-auth=fifo:/tmp//GMfifo17477 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -j2 --jobserver-auth=fifo:/tmp//GMfifo17477 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcassay.a /bin/ln -f .pcassay.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcassay.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /usr/pkg/bin/gmake -C pcassay2 -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcassay2 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo8673 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay2 MODULE_PATH=objects/pcassay2 MODULE_ASN=pcassay2.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pcassay2.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay2 -or objects/pcassay2 -odi -od pcassay2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay2.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j2 --jobserver-auth=fifo:/tmp//GMfifo8673 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j2 --jobserver-auth=fifo:/tmp//GMfifo8673 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j2 --jobserver-auth=fifo:/tmp//GMfifo8673 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2__.cpp -o pcassay2__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2___.cpp -o pcassay2___.o /bin/rm -f libpcassay2.a .libpcassay2.a.stamp ar cr libpcassay2.a pcassay2__.o pcassay2___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay2.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay2.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcassay2.a /bin/ln -f .pcassay2.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcassay2.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /usr/pkg/bin/gmake -C gbseq -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gbseq all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo19314 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -j2 --jobserver-auth=fifo:/tmp//GMfifo19314 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -j2 --jobserver-auth=fifo:/tmp//GMfifo19314 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -j2 --jobserver-auth=fifo:/tmp//GMfifo19314 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gbseq.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /usr/pkg/bin/gmake -C insdseq -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh insdseq all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo9906 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -j2 --jobserver-auth=fifo:/tmp//GMfifo9906 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -j2 --jobserver-auth=fifo:/tmp//GMfifo9906 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -j2 --jobserver-auth=fifo:/tmp//GMfifo9906 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libinsdseq.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libinsdseq.a /bin/ln -f .insdseq.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.insdseq.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /usr/pkg/bin/gmake -C tinyseq -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh tinyseq all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo21591 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -j2 --jobserver-auth=fifo:/tmp//GMfifo21591 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -j2 --jobserver-auth=fifo:/tmp//GMfifo21591 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -j2 --jobserver-auth=fifo:/tmp//GMfifo21591 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.tinyseq.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/pkg/bin/gmake -C biotree -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh biotree all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo22575 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -j2 --jobserver-auth=fifo:/tmp//GMfifo22575 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -j2 --jobserver-auth=fifo:/tmp//GMfifo22575 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -j2 --jobserver-auth=fifo:/tmp//GMfifo22575 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiotree.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libbiotree.a /bin/ln -f .biotree.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.biotree.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /usr/pkg/bin/gmake -C entrezgene -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test/Makefile cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh entrezgene all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo10710 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -j2 --jobserver-auth=fifo:/tmp//GMfifo10710 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -j2 --jobserver-auth=fifo:/tmp//GMfifo10710 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -j2 --jobserver-auth=fifo:/tmp//GMfifo10710 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrezgene.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/pkg/bin/gmake -C unit_test -j2 --jobserver-auth=fifo:/tmp//GMfifo10710 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/pkg/bin/gmake -C omssa -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh omssa all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo19948 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -j2 --jobserver-auth=fifo:/tmp//GMfifo19948 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -j2 --jobserver-auth=fifo:/tmp//GMfifo19948 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -j2 --jobserver-auth=fifo:/tmp//GMfifo19948 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libomssa.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libomssa.a /bin/ln -f .omssa.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.omssa.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /usr/pkg/bin/gmake -C remap -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh remap all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo1927 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -j2 --jobserver-auth=fifo:/tmp//GMfifo1927 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -j2 --jobserver-auth=fifo:/tmp//GMfifo1927 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -j2 --jobserver-auth=fifo:/tmp//GMfifo1927 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -j2 --jobserver-auth=fifo:/tmp//GMfifo1927 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -j2 --jobserver-auth=fifo:/tmp//GMfifo1927 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap___.cpp -o remap___.o /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libremap.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libremap.a /bin/ln -f .remap.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.remap.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -j2 --jobserver-auth=fifo:/tmp//GMfifo1927 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client_.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libremapcli.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libremapcli.a /bin/ln -f .remapcli.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.remapcli.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -C seqtest -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqtest all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo24525 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -j2 --jobserver-auth=fifo:/tmp//GMfifo24525 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -j2 --jobserver-auth=fifo:/tmp//GMfifo24525 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -j2 --jobserver-auth=fifo:/tmp//GMfifo24525 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqtest.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /usr/pkg/bin/gmake -C taxon1 -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh taxon1 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo7174 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -j2 --jobserver-auth=fifo:/tmp//GMfifo7174 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -j2 --jobserver-auth=fifo:/tmp//GMfifo7174 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -j2 --jobserver-auth=fifo:/tmp//GMfifo7174 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -j2 --jobserver-auth=fifo:/tmp//GMfifo7174 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -j2 --jobserver-auth=fifo:/tmp//GMfifo7174 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp: In member function 'void ncbi::objects::CDomainStorage::AddField(int, int, const string&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp:787:24: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 787 | if( m_types.size() <= field_no ) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~ gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/utils.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/ctreecont.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon1.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtaxon1.a /bin/ln -f .taxon1.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.taxon1.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -j2 --jobserver-auth=fifo:/tmp//GMfifo7174 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/local_taxon.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/local_taxon.cpp -o local_taxon.o /bin/rm -f liblocal_taxon.a .liblocal_taxon.a.stamp ar cr liblocal_taxon.a local_taxon.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblocal_taxon.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f liblocal_taxon.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/liblocal_taxon.a /bin/ln -f .local_taxon.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.local_taxon.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -C taxon3 -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh taxon3 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo15504 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -j2 --jobserver-auth=fifo:/tmp//GMfifo15504 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -j2 --jobserver-auth=fifo:/tmp//GMfifo15504 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -j2 --jobserver-auth=fifo:/tmp//GMfifo15504 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon3.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtaxon3.a /bin/ln -f .taxon3.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.taxon3.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /usr/pkg/bin/gmake -C gbproj -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gbproj all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo27506 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -j2 --jobserver-auth=fifo:/tmp//GMfifo27506 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -j2 --jobserver-auth=fifo:/tmp//GMfifo27506 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -j2 --jobserver-auth=fifo:/tmp//GMfifo27506 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp:9: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp: In member function 'void ncbi::objects::CProjectFolder::RemoveAllChildItems()': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable] 310 | CProjectItem& item = **it; | ^~~~ gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbproj.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgbproj.a /bin/ln -f .gbproj.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gbproj.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /usr/pkg/bin/gmake -C trackmgr -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh trackmgr all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo14997 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -j2 --jobserver-auth=fifo:/tmp//GMfifo14997 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j2 --jobserver-auth=fifo:/tmp//GMfifo14997 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j2 --jobserver-auth=fifo:/tmp//GMfifo14997 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -j2 --jobserver-auth=fifo:/tmp//GMfifo14997 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j2 --jobserver-auth=fifo:/tmp//GMfifo14997 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j2 --jobserver-auth=fifo:/tmp//GMfifo14997 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -j2 --jobserver-auth=fifo:/tmp//GMfifo14997 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgr.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgr.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j2 --jobserver-auth=fifo:/tmp//GMfifo14997 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrcli.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgrcli.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j2 --jobserver-auth=fifo:/tmp//GMfifo14997 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/tms_exception.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/blast_client.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackset_client.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp -o createremotetrack_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp -o switch_context_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackset_client.cpp -o trackset_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp -o createtrackset_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp -o supported_assemblies_client.o /bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o createremotetrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o trackset_client.o createtrackset_client.o supported_assemblies_client.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrgridcli.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a /bin/ln -f .trackmgrgridcli.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -C valerr -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh valerr all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo9561 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -j2 --jobserver-auth=fifo:/tmp//GMfifo9561 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -j2 --jobserver-auth=fifo:/tmp//GMfifo9561 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -j2 --jobserver-auth=fifo:/tmp//GMfifo9561 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalerr.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvalerr.a /bin/ln -f .valerr.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.valerr.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /usr/pkg/bin/gmake -C valid -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh valid all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo4988 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -j2 --jobserver-auth=fifo:/tmp//GMfifo4988 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -j2 --jobserver-auth=fifo:/tmp//GMfifo4988 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -j2 --jobserver-auth=fifo:/tmp//GMfifo4988 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalid.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvalid.a /bin/ln -f .valid.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.valid.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /usr/pkg/bin/gmake -C access -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh access all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo18227 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -j2 --jobserver-auth=fifo:/tmp//GMfifo18227 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -j2 --jobserver-auth=fifo:/tmp//GMfifo18227 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -j2 --jobserver-auth=fifo:/tmp//GMfifo18227 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access__.cpp -o access__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libaccess.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libaccess.a /bin/ln -f .access.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.access.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /usr/pkg/bin/gmake -C docsum -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh docsum all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo5863 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -j2 --jobserver-auth=fifo:/tmp//GMfifo5863 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -j2 --jobserver-auth=fifo:/tmp//GMfifo5863 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -j2 --jobserver-auth=fifo:/tmp//GMfifo5863 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.docsum.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /usr/pkg/bin/gmake -C featdef -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh featdef all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo22142 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -j2 --jobserver-auth=fifo:/tmp//GMfifo22142 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -j2 --jobserver-auth=fifo:/tmp//GMfifo22142 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -j2 --jobserver-auth=fifo:/tmp//GMfifo22142 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libfeatdef.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libfeatdef.a /bin/ln -f .featdef.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.featdef.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /usr/pkg/bin/gmake -C genomecoll -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh genome_collection all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo17600 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all Waiting for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/make_asn.lock. Acquired /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/make_asn.lock for PID 1617 (make_asn) gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo17600 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -j2 --jobserver-auth=fifo:/tmp//GMfifo17600 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j2 --jobserver-auth=fifo:/tmp//GMfifo17600 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -j2 --jobserver-auth=fifo:/tmp//GMfifo17600 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j2 --jobserver-auth=fifo:/tmp//GMfifo17600 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -j2 --jobserver-auth=fifo:/tmp//GMfifo17600 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenome_collection.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.genome_collection.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j2 --jobserver-auth=fifo:/tmp//GMfifo17600 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp: In member function 'void ncbi::objects::CGenomicCollectionsService::x_ConfigureConnection()': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:97:21: warning: 'void ncbi::CRPCClient_Base::SetRetryLimit(unsigned int)' is deprecated [-Wdeprecated-declarations] 97 | SetRetryLimit(40); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/rpcbase.hpp:44, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/genomecoll/genomic_collections_cli_.hpp:50, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:42, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:41: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/rpcbase_impl.hpp:92:10: note: declared here 92 | void SetRetryLimit(unsigned int n) { SetTryLimit(n); } | ^~~~~~~~~~~~~ gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o /bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgencoll_client.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgencoll_client.a /bin/ln -f .gencoll_client.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gencoll_client.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -C gc_cli -j2 --jobserver-auth=fifo:/tmp//GMfifo27495 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -j2 --jobserver-auth=fifo:/tmp//GMfifo11889 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -j2 --jobserver-auth=fifo:/tmp//GMfifo11889 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=gc_cli -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp -o gc_cli.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 gc_cli.o -Wl,-rpath-link,/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgencoll_client-static -lgenome_collection-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lsqlitewrapp-static -lxser-static -lxconnect-static -lxcompress-static -lxutil-static -lxncbi-static -lsqlite3 -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o gc_cli strip gc_cli /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gc_cli /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f gc_cli /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/gc_cli gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -C homologene -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh homologene all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo13965 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -j2 --jobserver-auth=fifo:/tmp//GMfifo13965 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -j2 --jobserver-auth=fifo:/tmp//GMfifo13965 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -j2 --jobserver-auth=fifo:/tmp//GMfifo13965 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.homologene.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /usr/pkg/bin/gmake -C mim -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh mim all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo25361 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -j2 --jobserver-auth=fifo:/tmp//GMfifo25361 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -j2 --jobserver-auth=fifo:/tmp//GMfifo25361 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -j2 --jobserver-auth=fifo:/tmp//GMfifo25361 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mim.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /usr/pkg/bin/gmake -C objprt -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh objprt all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo3834 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -j2 --jobserver-auth=fifo:/tmp//GMfifo3834 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -j2 --jobserver-auth=fifo:/tmp//GMfifo3834 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -j2 --jobserver-auth=fifo:/tmp//GMfifo3834 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjprt.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libobjprt.a /bin/ln -f .objprt.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.objprt.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /usr/pkg/bin/gmake -C variation -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh variation all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo10038 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -j2 --jobserver-auth=fifo:/tmp//GMfifo10038 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -j2 --jobserver-auth=fifo:/tmp//GMfifo10038 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -j2 --jobserver-auth=fifo:/tmp//GMfifo10038 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.variation.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /usr/pkg/bin/gmake -C macro -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh macro all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo6299 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -j2 --jobserver-auth=fifo:/tmp//GMfifo6299 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -j2 --jobserver-auth=fifo:/tmp//GMfifo6299 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -j2 --jobserver-auth=fifo:/tmp//GMfifo6299 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro___.cpp -o macro___.o /bin/rm -f libmacro.a .libmacro.a.stamp ar cr libmacro.a macro__.o macro___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmacro.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmacro.a /bin/ln -f .macro.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.macro.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /usr/pkg/bin/gmake -C unit_test -j2 --jobserver-auth=fifo:/tmp//GMfifo6299 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /usr/pkg/bin/gmake -C genesbyloc -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo26181 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j2 --jobserver-auth=fifo:/tmp//GMfifo26181 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j2 --jobserver-auth=fifo:/tmp//GMfifo26181 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j2 --jobserver-auth=fifo:/tmp//GMfifo26181 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenesbyloc.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.genesbyloc.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/pkg/bin/gmake -C coords -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh objcoords all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo15062 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m objcoords.asn -M "" -oA \ -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -j2 --jobserver-auth=fifo:/tmp//GMfifo15062 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -j2 --jobserver-auth=fifo:/tmp//GMfifo15062 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -j2 --jobserver-auth=fifo:/tmp//GMfifo15062 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjcoords.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libobjcoords.a /bin/ln -f .objcoords.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.objcoords.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /usr/pkg/bin/gmake -C varrep -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh varrep all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo14730 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m varrep.asn -M "" -oA \ -oc varrep -or objects/varrep -odi -od varrep.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -j2 --jobserver-auth=fifo:/tmp//GMfifo14730 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -j2 --jobserver-auth=fifo:/tmp//GMfifo14730 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -j2 --jobserver-auth=fifo:/tmp//GMfifo14730 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o /bin/rm -f libvarrep.a .libvarrep.a.stamp ar cr libvarrep.a varrep__.o varrep___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvarrep.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvarrep.a /bin/ln -f .varrep.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.varrep.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /usr/pkg/bin/gmake -C variation_libs -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /usr/pkg/bin/gmake -C dbsnp -j2 --jobserver-auth=fifo:/tmp//GMfifo23782 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. /usr/pkg/bin/gmake -C search_by_rsid -j2 --jobserver-auth=fifo:/tmp//GMfifo680 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh search_by_rsid all gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo17734 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr.asn /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \ -oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \ datatool: 2.23.2 gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j2 --jobserver-auth=fifo:/tmp//GMfifo17734 export-headers gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j2 --jobserver-auth=fifo:/tmp//GMfifo17734 flag-stamps gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j2 --jobserver-auth=fifo:/tmp//GMfifo17734 all gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp -o search_by_rsid__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp -o search_by_rsid___.o /bin/rm -f libsearchbyrsid.a .libsearchbyrsid.a.stamp ar cr libsearchbyrsid.a search_by_rsid__.o search_by_rsid___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsearchbyrsid.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsearchbyrsid.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsearchbyrsid.a /bin/ln -f .searchbyrsid.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.searchbyrsid.dep gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /usr/pkg/bin/gmake -C tooltip_service -j2 --jobserver-auth=fifo:/tmp//GMfifo680 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh dbsnp_tooltip_service all gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo3745 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \ -oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \ datatool: 2.23.2 gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j2 --jobserver-auth=fifo:/tmp//GMfifo3745 export-headers gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j2 --jobserver-auth=fifo:/tmp//GMfifo3745 flag-stamps gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j2 --jobserver-auth=fifo:/tmp//GMfifo3745 all gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp -o dbsnp_tooltip_service__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp -o dbsnp_tooltip_service___.o /bin/rm -f libdbsnp_tooltip_service.a .libdbsnp_tooltip_service.a.stamp ar cr libdbsnp_tooltip_service.a dbsnp_tooltip_service__.o dbsnp_tooltip_service___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_tooltip_service.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_tooltip_service.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbsnp_tooltip_service.a /bin/ln -f .dbsnp_tooltip_service.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbsnp_tooltip_service.dep gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs' /usr/pkg/bin/gmake -C dbsnp -j2 --jobserver-auth=fifo:/tmp//GMfifo23544 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /usr/pkg/bin/gmake -C primary_track -j2 --jobserver-auth=fifo:/tmp//GMfifo11783 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test/Makefile cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --protobuf dbsnp all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. grep: /grpc_cpp_plugin: No such file or directory Warning: Skipping code generation for dbsnp.proto because protoc is unavailable here. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... File dbsnp.module not found. Using defaults... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo23862 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.protobuf MODULE=dbsnp MODULE_PATH=objects/dbsnp/primary_track MODULE_ASN=dbsnp.proto MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/no/need/for/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j2 --jobserver-auth=fifo:/tmp//GMfifo23862 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j2 --jobserver-auth=fifo:/tmp//GMfifo23862 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j2 --jobserver-auth=fifo:/tmp//GMfifo23862 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc -o dbsnp.pb.wrapper.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc -o dbsnp.grpc.pb.wrapper.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp -o snpptis.o /bin/rm -f libdbsnp_ptis.a .libdbsnp_ptis.a.stamp ar cr libdbsnp_ptis.a dbsnp.pb.wrapper.o dbsnp.grpc.pb.wrapper.o snpptis.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_ptis.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_ptis.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbsnp_ptis.a /bin/ln -f .dbsnp_ptis.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbsnp_ptis.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo23862 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp' gmake[2]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' /usr/pkg/bin/gmake -C objmgr -j2 --jobserver-auth=fifo:/tmp//GMfifo7917 all_r || exit 5 gmake[2]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[2]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test/Makefile gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -j2 --jobserver-auth=fifo:/tmp//GMfifo19932 export-headers gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -j2 --jobserver-auth=fifo:/tmp//GMfifo19932 flag-stamps gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -j2 --jobserver-auth=fifo:/tmp//GMfifo19932 all gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_setters.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_info.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_info.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/table_field.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_switch.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/snp_annot_info.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_types_ci.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_cvt.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_selector.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_descr_ci.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/feat_ci.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/graph_ci.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object_index.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_ci.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info_object.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_info.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_base_info.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_info.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_info.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/priority.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_impl.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_manager.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_manager_impl.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_actions.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/heap_scope.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_impl.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_info.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_handle.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_ci.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_ci.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_ci.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_ci.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_handle.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_handle.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_handle.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_handle.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/align_ci.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/objmgr_exception.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range_map.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/object_manager.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector_ci.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seqdesc_ci.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_split_info.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_chunk_info.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_ci.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_type_index.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_mapper.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_mapper.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_collector.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader_factory.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/mapped_feat.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_feat_handle.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_graph_handle.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_handle.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_assigner.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction_impl.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_commands_impl.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_edit_commands.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_edit_commands.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_saver.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/unsupp_editsaver.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_engine.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_saver.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_finder.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/gc_assembly_parser.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split_parser.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_id_sort.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/table_field.cpp -o table_field.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object.cpp -o annot_object.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info.cpp -o tse_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp -o data_source.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/priority.cpp -o priority.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope.cpp -o scope.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/heap_scope.cpp -o heap_scope.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_impl.cpp -o scope_impl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_info.cpp -o scope_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_handle.cpp -o tse_handle.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map.cpp -o seq_map.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/align_ci.cpp -o align_ci.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader.cpp -o data_loader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range.cpp -o handle_range.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/object_manager.cpp -o object_manager.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector.cpp -o seq_vector.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_collector.cpp -o annot_collector.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split_parser.cpp -o split_parser.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjmgr.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjmgr.dep gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo19932 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test' /usr/pkg/bin/gmake -C util -j2 --jobserver-auth=fifo:/tmp//GMfifo19932 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/unit_test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/unit_test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -j2 --jobserver-auth=fifo:/tmp//GMfifo10007 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -j2 --jobserver-auth=fifo:/tmp//GMfifo10007 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -j2 --jobserver-auth=fifo:/tmp//GMfifo10007 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seqtitle.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/obj_sniff.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_align_util.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_trimmer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature_edit.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_options.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp -o weight.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp: In function 'void ncbi::objects::GetProteinWeights(const ncbi::objects::CBioseq_Handle&, ncbi::objects::TWeights&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp:363:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] 363 | } catch (CObjmgrUtilException) { | ^~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CRef ncbi::objects::sequence::SourceToProduct(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TS2PFlags, ncbi::objects::CScope*, int*)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:814:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] 814 | } catch (CObjmgrUtilException) { | ^~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CRef ncbi::objects::sequence::ProductToSource(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TP2SFlags, ncbi::objects::CScope*)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:857:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] 857 | } catch (CObjmgrUtilException) { | ^~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:862:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] 862 | } catch (CObjmgrUtilException) { | ^~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp: In member function 'ncbi::CRef ncbi::objects::SRelLoc::Resolve(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*, ncbi::objects::SRelLoc::TFlags) const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:4763:22: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] 4763 | } catch (CObjmgrUtilException) { | ^~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp: In instantiation of 'void ncbi::objects::x_Translate(const Container&, std::string&, int, const ncbi::objects::CGenetic_code*, bool, bool, bool, bool, bool*) [with Container = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:4104:99: required from here /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:3647:43: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 3647 | const size_t usable_size = seq.size() > frame ? seq.size() - frame : 0; | ~~~~~~~~~~~^~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp: In instantiation of 'void ncbi::objects::x_Translate(const Container&, std::string&, int, const ncbi::objects::CGenetic_code*, bool, bool, bool, bool, bool*) [with Container = ncbi::objects::CSeqVector; std::string = std::__cxx11::basic_string]': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:4132:99: required from here /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:3647:43: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp: In function 'int ncbi::objects::SkipMixedContent(const char*)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp:3691:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 3691 | for (int i = 0; i < sizeof (mixedTags); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CWordPairIndexer::PopulateWordPairIndex(std::string)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp:3768:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3768 | for (int i = 0; i < str.length(); i++) { | ~~^~~~~~~~~~~~~~ /usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature.cpp -o feature.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp -o indexer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProteinIdx(const ncbi::objects::CBioseq_Handle&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp:2230:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2230 | if (offset > 0 && offset < m_MainTitle.length()) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp:2440:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2440 | if (offset > 0 && offset < m_MainTitle.length()) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp: In function 'size_t s_TitleEndsInOrganism(std::string&, ncbi::CTempString)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp:3090:17: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 3090 | if (pos == idx + 2) { | ~~~~^~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'std::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp:4032:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 4032 | for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp: In function 'bool ncbi::objects::sequence::BadSeqLocSortOrder(const ncbi::objects::CBioseq_Handle&, const ncbi::objects::CSeq_loc&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp:612:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] 612 | } catch (CException) { | ^~~~~~~~~~ /biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp -o objutil.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp: In instantiation of 'bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp:1824:81: required from here /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp:1752:57: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 1752 | for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp:1114:13: warning: 'bool ncbi::objects::s_IsValidAccession(const string&)' defined but not used [-Wunused-function] 1114 | static bool s_IsValidAccession(const string& acc) | ^~~~~~~~~~~~~~~~~~ -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef.cpp -o autodef.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp: In member function 'bool ncbi::objects::CAutoDefModifierCombo::AddQual(bool, int, bool)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:1033:10: warning: unused variable 'added' [-Wunused-variable] 1033 | bool added = false, rval = false; | ^~~~~ -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjutil.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjutil.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /usr/pkg/bin/gmake -C unit_test -j2 --jobserver-auth=fifo:/tmp//GMfifo10007 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /usr/pkg/bin/gmake -C split -j2 --jobserver-auth=fifo:/tmp//GMfifo19932 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -j2 --jobserver-auth=fifo:/tmp//GMfifo17983 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -j2 --jobserver-auth=fifo:/tmp//GMfifo17983 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -j2 --jobserver-auth=fifo:/tmp//GMfifo17983 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_blob.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/id_range.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/object_splitinfo.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/asn_sizer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/annot_piece.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/chunk_info.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/size.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_exceptions.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/id_range.cpp -o id_range.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/size.cpp -o size.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.a .libid2_split.a.stamp ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2_split.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2_split.a /bin/ln -f .id2_split.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2_split.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[2]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /usr/pkg/bin/gmake -C objtools -j2 --jobserver-auth=fifo:/tmp//GMfifo7917 all_r || exit 5 gmake[2]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' gmake[2]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/unit_test_util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/lds2/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/unit_test_util/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/unit_test_util/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/lds2/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/lds2/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cddalignview/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cddalignview/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cddalignview/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/test/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/manip/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/validator/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/manip/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/manip/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/validator/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/validator/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/asniotest/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/asniotest/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/asniotest/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/snputil/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/uudutil/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/snputil/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/snputil/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/uudutil/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/uudutil/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/variation/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/writers/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/variation/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/variation/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/writers/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/writers/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/import/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/flatfile/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/import/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/import/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test_util/Makefile test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/flatfile/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/flatfile/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lds2/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/unit_test_util/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cddalignview/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cddalignview/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT manip/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT validator/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/manip/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/validator/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT asniotest/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT align/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/asniotest/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT snputil/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT uudutil/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/snputil/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/uudutil/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT variation/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT writers/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/variation/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT import/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/writers/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT flatfile/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/import/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/flatfile/Makefile /usr/pkg/bin/gmake -C logging -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -j2 --jobserver-auth=fifo:/tmp//GMfifo3080 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -j2 --jobserver-auth=fifo:/tmp//GMfifo3080 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -j2 --jobserver-auth=fifo:/tmp//GMfifo3080 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/message.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/listener.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/message.cpp -o message.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/listener.cpp -o listener.o /bin/rm -f libxlogging.a .libxlogging.a.stamp ar cr libxlogging.a message.o listener.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxlogging.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxlogging.a /bin/ln -f .xlogging.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xlogging.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /usr/pkg/bin/gmake -C unit_test_util -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/unit_test_util' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/unit_test_util' /usr/pkg/bin/gmake -C readers -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in` /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT app/Makefile test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -j2 --jobserver-auth=fifo:/tmp//GMfifo19069 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -j2 --jobserver-auth=fifo:/tmp//GMfifo19069 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -j2 --jobserver-auth=fifo:/tmp//GMfifo19069 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -j2 --jobserver-auth=fifo:/tmp//GMfifo19069 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -j2 --jobserver-auth=fifo:/tmp//GMfifo19069 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_listener.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message_handler.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/read_util.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/format_guess_ex.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/seqid_validate.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/acc_pattern.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/cigar.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formats.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/alnread.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_errors.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_error_reporter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/getfeature.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/track_data.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_data.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/microarray_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/phrap.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_base.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/rm_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/wiggle_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_location_merger.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_location_merger.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff_base_columns.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_data.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gvf_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/vcf_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_standard.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_custom.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_column_data.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/best_feat_finder.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_exception.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_converter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_error.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_to_enum.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/message_listener.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/line_error.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message.cpp -o reader_message.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_listener.cpp -o reader_listener.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message_handler.cpp -o reader_message_handler.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/read_util.cpp -o read_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/seqid_validate.cpp -o seqid_validate.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /home/pbulk/bu/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp:58:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] 58 | AgpRead(is, entries, component_id_rule, set_gap_data, component_types); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp:33: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here 61 | void AgpRead(CNcbiIstream& is, | ^~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp:74:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] 74 | AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp:33: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here 52 | void AgpRead(CNcbiIstream& is, | ^~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp: In member function 'int ncbi::CAgpErrEx::GetCount(ncbi::CAgpErr::EErrCode) const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp:1706:14: warning: comparison between 'enum ncbi::CAgpErr::EErrCode' and 'enum ncbi::CAgpErrEx::' [-Wenum-compare] 1706 | if (code < CODE_Last) { | ~~~~~^~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp:1706:14: warning: comparison between types 'ncbi::CAgpErr::EErrCode' and 'ncbi::CAgpErrEx::' [-Wsign-compare] /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp: In member function 'virtual void ncbi::CAgpValidateReader::OnObjectChange()': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp:585:28: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] 585 | catch(CException e){ | ^ ild-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/cigar.cpp -o cigar.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp -o fasta.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formats.cpp -o aln_formats.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/alnread.cpp -o alnread.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_errors.cpp -o aln_errors.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_error_reporter.cpp -o aln_error_reporter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp -o aln_formatguess.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8d/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsClustal(ncbi::objects::CAlnFormatGuesser::TSample&, ncbi::objects::CPeekAheadStream&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:137:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 137 | if (lineCount < sample.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsFastaGap(const TSample&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:176:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 176 | for ( ; i < sample.size(); ++i) { | ~~^~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:181:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 181 | if (i < sample.size()) { | ~~^~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsSequin(const TSample&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:234:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 234 | for (int index=0; index < tokens.size(); ++index) { | ~~~~~~^~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsMultAlign(const TSample&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:258:23: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 258 | if (sample.size() < lineIndex + 4) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:295:22: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] 295 | return (dataSize == (endOffset - startOffset + 1)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp: In function 'void ncbi::objects::AlnUtil::CheckId(const string&, const std::vector&, int, int, bool)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp:56:28: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 56 | if ((orderedIds.size() > idCount) && | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp: In member function 'void ncbi::CAlnReader::x_VerifyAlignmentInfo(const ncbi::objects::SAlignmentFile&, ncbi::CAlnReader::TReadFlags)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp:409:29: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 409 | for (int i=0; i< numDeflines; ++i) { | ~^~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp: In member function 'bool ncbi::CAlnReader::x_IsGap(ncbi::CAlnReader::TNumrow, ncbi::TSeqPos, const string&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp:461:13: warning: comparison of integer expressions of different signedness: 'ncbi::CAlnReader::TNumrow' {aka 'int'} and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 461 | if (row > m_MiddleSections.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp: In member function 'void ncbi::CAlnReader::x_AssignDensegIds(ncbi::CAlnReader::TFastaFlags, ncbi::objects::CDense_seg&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp:507:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 507 | if (i < m_DeflineInfo.size() && !m_DeflineInfo[i].mData.empty()) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp: In member function 'virtual void ncbi::objects::CAlnScanner::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp:92:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 92 | for (auto i=0; i < mSequences.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp: In member function 'bool ncbi::objects::CAlnScanner::xSeqIdIsEqualToInfoAt(const string&, int)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp:233:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 233 | if (index >= mSeqIds.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp: In member function 'void ncbi::objects::CAlnScannerClustal::sProcessClustalDataLine(const std::vector >&, int, int, int, bool, int&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp:296:27: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] 296 | if (currentLineLength != blockLineLength) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ e8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp -o aln_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp -o aln_scanner.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp -o aln_scanner_fastagap.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp -o aln_scanner_clustal.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp -o aln_scanner_nexus.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp:129:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 129 | if (dataLineCount < mSequenceCount) { // in first block | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp:210:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 210 | if (mSequenceCount != mSeqIds.size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp: In member function 'virtual void ncbi::objects::CAlnScannerSequin::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:75:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 75 | if (lineInBlock != mSeqIds.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:156:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 156 | if (lineInBlock >= mSeqIds.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:186:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 186 | for (auto i = 0; i < seqData.size(); ++i) { | ~~^~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp: In static member function 'static bool ncbi::objects::CAlnScannerSequin::xExtractSequinSequenceData(const string&, std::string&, std::string&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:259:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 259 | for (auto curBlock = 3; curBlock < tokens.size() - 1; ++curBlock) { | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:264:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 264 | for (auto curBlock = 1; curBlock < tokens.size(); ++curBlock) { | ~~~~~~~~~^~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp: In member function 'virtual void ncbi::objects::CAlnScannerMultAlign::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp:125:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 125 | if (lineInBlock != expectedNumSequences) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp:135:48: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 135 | if (!inFirstBlock && lineInBlock == expectedNumSequences) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp -o aln_scanner_phylip.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp -o aln_scanner_sequin.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp -o aln_scanner_multalign.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/track_data.cpp -o track_data.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/phrap.cpp -o phrap.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work//home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp: In member function 'bool ncbi::objects::CFeatureTableReader_Imp::x_AddQualifierToCdregion(ncbi::CRef, ncbi::objects::CSeqFeatData&, ncbi::objects::CFeatureTableReader_Imp::EQual, const string&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp:1407:22: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] 1407 | } catch( CStringException ) { | ^~~~~~~~~~~~~~~~ ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARG/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector >&, bool, std::vector&) const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp:832:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] 832 | for (auto i=0; i >&, ncbi::objects::ENa_strand, ncbi::objects::ENa_strand, ncbi::TSeqPos, ncbi::TSeqPos, const ncbi::objects::CGff2Record&, ncbi::objects::CSeq_align_Base::C_Segs::TDenseg&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp:921:21: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 921 | for (auto i=0; i)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp:1006:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] 1006 | for (auto i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 144 | if (mBlockCount != mBlockSizes.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp:150:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 150 | if (mBlockCount != mBlockStartsQ.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp:156:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 156 | if (mBlockCount != mBlockStartsT.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp: In member function 'virtual bool ncbi::objects::CBedReader::xDetermineLikelyColumnCount(ncbi::objects::CLinePreBuffer&, ncbi::objects::ILineErrorListener*)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp:484:35: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 484 | if (blockSizes.size() != blockCount) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp:505:36: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 505 | if (blockStarts.size() != blockCount) { | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ d-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_reader.cpp -o psl_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp -o psl_data.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql.cpp -o bed_autosql.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_standard.cpp -o bed_autosql_standard.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_custom.cpp -o bed_autosql_custom.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_column_data.cpp -o bed_column_data.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp: In function 'void ncbi::objects::s_GetPrimerInfo(const ncbi::objects::CSourceModParser::SMod*, const ncbi::objects::CSourceModParser::SMod*, std::vector, std::__cxx11::basic_string > >&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp:877:20: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] 877 | for (int i=0; i&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp:912:25: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 912 | for (auto i=0; i base_length) { /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'void ncbi::CSeqDBVol::GetRawSeqAndAmbig(int, const char**, int*, int*) const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2998:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] 2998 | TIndx map_end = 0; | ^~~~~~~ BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/se/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:972:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] 972 | int found_short(-1); | ^~~~~~~~~~~ qdb_reader/seqdboidlist.cpp -o seqdboidlist.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wal/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp: In member function 'void ncbi::CSeqDBLMDB::GetOidsForTaxIds(const std::set&, std::vector&, std::vector&) const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:642:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 642 | for (int i=0; i < oids_set.size(); i++) { | ~~^~~~~~~~~~~~~~~~~ l -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqdb.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqdb.a /bin/ln -f .seqdb.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqdb.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/pkg/bin/gmake -C demo -j2 --jobserver-auth=fifo:/tmp//GMfifo8558 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -j2 --jobserver-auth=fifo:/tmp//GMfifo4031 flag-stamps gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -j2 --jobserver-auth=fifo:/tmp//GMfifo4031 all gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 seqdb_demo.o -Wl,-rpath-link,/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o seqdb_demo strip seqdb_demo /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_demo /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seqdb_demo gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo8558 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -j2 --jobserver-auth=fifo:/tmp//GMfifo487 flag-stamps gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -j2 --jobserver-auth=fifo:/tmp//GMfifo487 all gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'void CSeqDBPerfApp::x_UpdateMemoryUsage(int)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:59: warning: 'bool ncbi::GetMemoryUsage(size_t*, size_t*, size_t*)' is deprecated [-Wdeprecated-declarations] 114 | if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) { | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:36: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:511:13: note: declared here 511 | extern bool GetMemoryUsage(size_t* total, size_t* resident, size_t* shared); | ^~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'int CSeqDBPerfApp::x_ScanDatabase()': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:154:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 154 | for (ssize_t i = 0; i < oids2iterate.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~ gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 seqdb_perf.o -Wl,-rpath-link,/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -lpthread -o seqdb_perf strip seqdb_perf /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_perf /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seqdb_perf gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/pkg/bin/gmake -C seqdb_writer -j2 --jobserver-auth=fifo:/tmp//GMfifo24390 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j2 --jobserver-auth=fifo:/tmp//GMfifo11259 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j2 --jobserver-auth=fifo:/tmp//GMfifo11259 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/bin/awk: can't open file make_writedb.log.new source line number 4 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j2 --jobserver-auth=fifo:/tmp//GMfifo11259 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /home/pbu/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp: In member function 'void ncbi::CWriteDB_LMDB::x_CommitTransaction()': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:295:42: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] 295 | unsigned int num_threads = GetCpuCount(); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbifile.hpp:53, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:35: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here 479 | unsigned int GetCpuCount(void) | ^~~~~~~~~~~ lk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o /bin/rm -f libwritedb.a .libwritedb.a.stamp ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libwritedb.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libwritedb.a /bin/ln -f .writedb.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.writedb.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/pkg/bin/gmake -C unit_test -j2 --jobserver-auth=fifo:/tmp//GMfifo11259 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/pkg/bin/gmake -C gene_info_reader -j2 --jobserver-auth=fifo:/tmp//GMfifo24390 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j2 --jobserver-auth=fifo:/tmp//GMfifo27932 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j2 --jobserver-auth=fifo:/tmp//GMfifo27932 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j2 --jobserver-auth=fifo:/tmp//GMfifo27932 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgene_info.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgene_info.a /bin/ln -f .gene_info.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gene_info.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/pkg/bin/gmake -C demo -j2 --jobserver-auth=fifo:/tmp//GMfifo27932 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -j2 --jobserver-auth=fifo:/tmp//GMfifo29257 flag-stamps gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -j2 --jobserver-auth=fifo:/tmp//GMfifo29257 all gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 gene_info_reader_app.o -Wl,-rpath-link,/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -lpthread -o gene_info_reader strip gene_info_reader /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f gene_info_reader /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/gene_info_reader gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/pkg/bin/gmake -C unit_test -j2 --jobserver-auth=fifo:/tmp//GMfifo27932 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/pkg/bin/gmake -C gene_info_writer -j2 --jobserver-auth=fifo:/tmp//GMfifo24390 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' /usr/pkg/bin/gmake -C services -j2 --jobserver-auth=fifo:/tmp//GMfifo24390 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -j2 --jobserver-auth=fifo:/tmp//GMfifo5952 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -j2 --jobserver-auth=fifo:/tmp//GMfifo5952 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -j2 --jobserver-auth=fifo:/tmp//GMfifo5952 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services/blast_services.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast_services.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblast_services.a /bin/ln -f .blast_services.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blast_services.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/pkg/bin/gmake -C unit_test -j2 --jobserver-auth=fifo:/tmp//GMfifo5952 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/pkg/bin/gmake -C blastdb_format -j2 --jobserver-auth=fifo:/tmp//GMfifo24390 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j2 --jobserver-auth=fifo:/tmp//GMfifo23444 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j2 --jobserver-auth=fifo:/tmp//GMfifo23444 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j2 --jobserver-auth=fifo:/tmp//GMfifo23444 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] 49 | CSeqFormatterConfig config /* = CSeqFormatterConfig() */) | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] 270 | void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb_format.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastdb_format.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/pkg/bin/gmake -C unit_test -j2 --jobserver-auth=fifo:/tmp//GMfifo23444 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast' /usr/pkg/bin/gmake -C lds2 -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2' /usr/pkg/bin/gmake -C pubseq_gateway -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cassandra/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT protobuf/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cache/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ipg/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg/Makefile /usr/pkg/bin/gmake -C cassandra -j2 --jobserver-auth=fifo:/tmp//GMfifo24022 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra' /usr/pkg/bin/gmake -C client -j2 --jobserver-auth=fifo:/tmp//GMfifo24022 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j2 --jobserver-auth=fifo:/tmp//GMfifo13841 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j2 --jobserver-auth=fifo:/tmp//GMfifo13841 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j2 --jobserver-auth=fifo:/tmp//GMfifo13841 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp -o psg_client.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp -o psg_client_transport.o /bin/rm -f libpsg_client.a .libpsg_client.a.stamp ar cr libpsg_client.a psg_client.o psg_client_transport.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpsg_client.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpsg_client.a /bin/ln -f .psg_client.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.psg_client.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo13841 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /usr/pkg/bin/gmake -C protobuf -j2 --jobserver-auth=fifo:/tmp//GMfifo24022 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf' /usr/pkg/bin/gmake -C cache -j2 --jobserver-auth=fifo:/tmp//GMfifo24022 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache' /usr/pkg/bin/gmake -C ipg -j2 --jobserver-auth=fifo:/tmp//GMfifo24022 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' /usr/pkg/bin/gmake -C data_loaders -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lds2/Makefile test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT patcher/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT asn_cache/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cdd/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd/Makefile /usr/pkg/bin/gmake -C genbank -j2 --jobserver-auth=fifo:/tmp//GMfifo5172 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in` /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubseq/Makefile test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubseq2/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test/Makefile gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j2 --jobserver-auth=fifo:/tmp//GMfifo7103 export-headers gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j2 --jobserver-auth=fifo:/tmp//GMfifo7103 export-headers gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j2 --jobserver-auth=fifo:/tmp//GMfifo7103 flag-stamps gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j2 --jobserver-auth=fifo:/tmp//GMfifo7103 flag-stamps gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j2 --jobserver-auth=fifo:/tmp//GMfifo7103 all gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp: In function 'std::string ncbi::objects::{anonymous}::sx_ErrorSeqIds(ncbi::objects::CReaderRequestResult&, const std::vector&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:1144:37: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 1144 | if (++total > kMaxErrorSeqIds) continue; | ~~~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:1151:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 1151 | if (total > kMaxErrorSeqIds) { | ~~~~~~^~~~~~~~~~~~~~~~~ gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp -o wgsmaster.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/w/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp: In constructor 'ncbi::objects::CBlob_id::CBlob_id(ncbi::CTempString)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp:51:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] 51 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ ork/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp /bin/rm -f libncbi_xreader-dll.so .libncbi_xreader-dll.so.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -shared -o libncbi_xreader-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -fPIC dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath-link,/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader.dep /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.so /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader-dll.so /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader-dll.so /bin/ln -f .ncbi_xreader-dll.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader-dll.dep gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j2 --jobserver-auth=fifo:/tmp//GMfifo7103 all gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp -o gbnative.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp -o psg_loader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp /bin/rm -f libncbi_xloader_genbank-dll.so .libncbi_xloader_genbank-dll.so.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -shared -o libncbi_xloader_genbank-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -fPIC gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -Wl,-rpath-link,/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgeneral -lncbi_xreader-dll -lz -lbz2 -llzo2 -lzstd -lm -lpthread /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.a /bin/ln -f .ncbi_xloader_genbank.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank.dep /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.so /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank-dll.so /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank-dll.so /bin/ln -f .ncbi_xloader_genbank-dll.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank-dll.dep gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -C cache -j2 --jobserver-auth=fifo:/tmp//GMfifo11121 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j2 --jobserver-auth=fifo:/tmp//GMfifo5787 export-headers gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j2 --jobserver-auth=fifo:/tmp//GMfifo5787 flag-stamps gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j2 --jobserver-auth=fifo:/tmp//GMfifo5787 all gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp /bin/rm -f libncbi_xreader_cache-dll.so .libncbi_xreader_cache-dll.so.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -shared -o libncbi_xreader_cache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -fPIC reader_cache.o writer_cache.o -Wl,-rpath-link,/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -lpthread /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a /bin/ln -f .ncbi_xreader_cache.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.so /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache-dll.so /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.so /bin/ln -f .ncbi_xreader_cache-dll.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/pkg/bin/gmake -C pubseq -j2 --jobserver-auth=fifo:/tmp//GMfifo11121 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' /usr/pkg/bin/gmake -C id2 -j2 --jobserver-auth=fifo:/tmp//GMfifo11121 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j2 --jobserver-auth=fifo:/tmp//GMfifo27641 export-headers gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j2 --jobserver-auth=fifo:/tmp//GMfifo27641 flag-stamps gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j2 --jobserver-auth=fifo:/tmp//GMfifo27641 all gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp /bin/rm -f libncbi_xreader_id2-dll.so .libncbi_xreader_id2-dll.so.stamp ar cr libncbi_xreader_id2.a reader_id2.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -shared -o libncbi_xreader_id2-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -fPIC reader_id2.o -Wl,-rpath-link,/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lm -lpthread /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2.a /bin/ln -f .ncbi_xreader_id2.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2.dep /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.so /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2-dll.so /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2-dll.so /bin/ln -f .ncbi_xreader_id2-dll.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2-dll.dep gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/pkg/bin/gmake -C id1 -j2 --jobserver-auth=fifo:/tmp//GMfifo11121 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j2 --jobserver-auth=fifo:/tmp//GMfifo25102 export-headers gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j2 --jobserver-auth=fifo:/tmp//GMfifo25102 flag-stamps gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j2 --jobserver-auth=fifo:/tmp//GMfifo25102 all gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp /bin/rm -f libncbi_xreader_id1-dll.so .libncbi_xreader_id1-dll.so.stamp ar cr libncbi_xreader_id1.a reader_id1.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -shared -o libncbi_xreader_id1-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -fPIC reader_id1.o -Wl,-rpath-link,/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lm -lpthread /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.a /bin/ln -f .ncbi_xreader_id1.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1.dep /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.so /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1-dll.so /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1-dll.so /bin/ln -f .ncbi_xreader_id1-dll.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1-dll.dep gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/pkg/bin/gmake -C pubseq2 -j2 --jobserver-auth=fifo:/tmp//GMfifo11121 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' /usr/pkg/bin/gmake -C gicache -j2 --jobserver-auth=fifo:/tmp//GMfifo11121 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j2 --jobserver-auth=fifo:/tmp//GMfifo27364 export-headers gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j2 --jobserver-auth=fifo:/tmp//GMfifo27364 flag-stamps gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j2 --jobserver-auth=fifo:/tmp//GMfifo27364 all gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'x_DataToGiData': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:289:7: warning: unused variable 'logmsg' [-Wunused-variable] 289 | char logmsg[256]; | ^~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_LoadAdd': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:635:9: warning: unused variable 'acc_len' [-Wunused-variable] 635 | int acc_len; | ^~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_SetMeta': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:18: warning: unused variable 'stime' [-Wunused-variable] 833 | char meta[512], stime[128]; | ^~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:7: warning: unused variable 'meta' [-Wunused-variable] 833 | char meta[512], stime[128]; | ^~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_GetAccFreqTab': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:984:11: warning: unused variable 'gi_len' [-Wunused-variable] 984 | int64_t gi_len = 0; | ^~~~~~ gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o /bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp /bin/rm -f libncbi_xreader_gicache-dll.so .libncbi_xreader_gicache-dll.so.stamp ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -shared -o libncbi_xreader_gicache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -fPIC reader_gicache.o gicache.o -Wl,-rpath-link,/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -llmdb -lpthread /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache.a /bin/ln -f .ncbi_xreader_gicache.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache.dep /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache-dll.so /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache-dll.so /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache-dll.so /bin/ln -f .ncbi_xreader_gicache-dll.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache-dll.dep gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo11121 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -C lds2 -j2 --jobserver-auth=fifo:/tmp//GMfifo5172 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' /usr/pkg/bin/gmake -C blastdb -j2 --jobserver-auth=fifo:/tmp//GMfifo5172 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test/Makefile gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j2 --jobserver-auth=fifo:/tmp//GMfifo1506 export-headers gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j2 --jobserver-auth=fifo:/tmp//GMfifo1506 export-headers gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j2 --jobserver-auth=fifo:/tmp//GMfifo1506 flag-stamps gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j2 --jobserver-auth=fifo:/tmp//GMfifo1506 flag-stamps gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j2 --jobserver-auth=fifo:/tmp//GMfifo1506 all gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j2 --jobserver-auth=fifo:/tmp//GMfifo1506 all gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -C unit_test -j2 --jobserver-auth=fifo:/tmp//GMfifo4533 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -C patcher -j2 --jobserver-auth=fifo:/tmp//GMfifo5172 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' /usr/pkg/bin/gmake -C asn_cache -j2 --jobserver-auth=fifo:/tmp//GMfifo5172 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' /usr/pkg/bin/gmake -C cdd -j2 --jobserver-auth=fifo:/tmp//GMfifo5172 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders' /usr/pkg/bin/gmake -C simple -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple TMPL=xobjsimple -j2 --jobserver-auth=fifo:/tmp//GMfifo3808 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple TMPL=xobjsimple -j2 --jobserver-auth=fifo:/tmp//GMfifo3808 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple TMPL=xobjsimple -j2 --jobserver-auth=fifo:/tmp//GMfifo3808 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple/simple_om.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp ar cr libxobjsimple.a simple_om.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjsimple.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjsimple.a /bin/ln -f .xobjsimple.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjsimple.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /usr/pkg/bin/gmake -C alnmgr -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test/Makefile gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j2 --jobserver-auth=fifo:/tmp//GMfifo11644 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j2 --jobserver-auth=fifo:/tmp//GMfifo11644 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j2 --jobserver-auth=fifo:/tmp//GMfifo11644 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alndiag.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmix.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnseq.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alntext.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_container.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp:1475:35: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CAlnMap::TNumrow' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1475 | for (TNumrow row = 0; row < selected_rows.size(); row++) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 76 | match1->m_ChainScore == match2->m_ChainScore && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 77 | match1->m_Score > match2->m_Score || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 192 | (aln_seq1->m_StrandScore > 0 && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 193 | strand1 == eNa_strand_minus || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 196 | aln_seq2->m_StrandScore > 0 && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 197 | strand2 == eNa_strand_minus || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 198 | aln_seq2->m_StrandScore < 0 && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 199 | strand2 != eNa_strand_minus)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 311 | if (plus && prev_start_plus_len < start || | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrappe/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 136 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 300 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'std::string& ncbi::CSparseAln::GetAlnSeqString(ncbi::IAlnExplorer::TNumrow, std::string&, const TSignedRange&, bool) const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:702:46: warning: comparison of integer expressions of different signedness: 'ncbi::COpenRange::position_type' {aka 'int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 702 | if (translate && aln_range.GetLength() >= trim_from + trim_to) { | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ r/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalnmgr.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalnmgr.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/pkg/bin/gmake -C demo -j2 --jobserver-auth=fifo:/tmp//GMfifo11644 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' /usr/pkg/bin/gmake -C unit_test -j2 --jobserver-auth=fifo:/tmp//GMfifo11644 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/pkg/bin/gmake -C cddalignview -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cddalignview' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cddalignview' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/test' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/test' /usr/pkg/bin/gmake -C manip -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/manip' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/manip' /usr/pkg/bin/gmake -C eutils -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/linkout/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/linkout/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/linkout/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT linkout/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/linkout/Makefile /usr/pkg/bin/gmake -C egquery -j2 --jobserver-auth=fifo:/tmp//GMfifo8261 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd egquery all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... File egquery.module not found. Using defaults... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo3387 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=egquery MODULE_PATH=objtools/eutils/egquery MODULE_ASN=egquery.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m egquery.dtd -M "" -oA \ -oc egquery -or objtools/eutils/egquery -odi -od egquery.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd egquery.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j2 --jobserver-auth=fifo:/tmp//GMfifo3387 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j2 --jobserver-auth=fifo:/tmp//GMfifo3387 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j2 --jobserver-auth=fifo:/tmp//GMfifo3387 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery__.cpp -o egquery__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery___.cpp -o egquery___.o /bin/rm -f libegquery.a .libegquery.a.stamp ar cr libegquery.a egquery__.o egquery___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libegquery.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libegquery.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libegquery.a /bin/ln -f .egquery.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.egquery.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /usr/pkg/bin/gmake -C elink -j2 --jobserver-auth=fifo:/tmp//GMfifo8261 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd elink all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... File elink.module not found. Using defaults... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo4911 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=elink MODULE_PATH=objtools/eutils/elink MODULE_ASN=elink.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m elink.dtd -M "" -oA \ -oc elink -or objtools/eutils/elink -odi -od elink.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd elink.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink TMPL=elink -j2 --jobserver-auth=fifo:/tmp//GMfifo4911 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink TMPL=elink -j2 --jobserver-auth=fifo:/tmp//GMfifo4911 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink TMPL=elink -j2 --jobserver-auth=fifo:/tmp//GMfifo4911 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink__.cpp -o elink__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink___.cpp -o elink___.o /bin/rm -f libelink.a .libelink.a.stamp ar cr libelink.a elink__.o elink___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libelink.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libelink.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libelink.a /bin/ln -f .elink.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.elink.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' /usr/pkg/bin/gmake -C epost -j2 --jobserver-auth=fifo:/tmp//GMfifo8261 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd epost all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... File epost.module not found. Using defaults... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo9598 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=epost MODULE_PATH=objtools/eutils/epost MODULE_ASN=epost.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m epost.dtd -M "" -oA \ -oc epost -or objtools/eutils/epost -odi -od epost.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd epost.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost TMPL=epost -j2 --jobserver-auth=fifo:/tmp//GMfifo9598 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost TMPL=epost -j2 --jobserver-auth=fifo:/tmp//GMfifo9598 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost TMPL=epost -j2 --jobserver-auth=fifo:/tmp//GMfifo9598 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost__.cpp -o epost__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost___.cpp -o epost___.o /bin/rm -f libepost.a .libepost.a.stamp ar cr libepost.a epost__.o epost___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libepost.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libepost.a /bin/ln -f .epost.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.epost.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' /usr/pkg/bin/gmake -C esearch -j2 --jobserver-auth=fifo:/tmp//GMfifo8261 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd esearch all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... File esearch.module not found. Using defaults... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo14329 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=esearch MODULE_PATH=objtools/eutils/esearch MODULE_ASN=esearch.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m esearch.dtd -M "" -oA \ -oc esearch -or objtools/eutils/esearch -odi -od esearch.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd esearch.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j2 --jobserver-auth=fifo:/tmp//GMfifo14329 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j2 --jobserver-auth=fifo:/tmp//GMfifo14329 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j2 --jobserver-auth=fifo:/tmp//GMfifo14329 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch__.cpp -o esearch__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch___.cpp -o esearch___.o /bin/rm -f libesearch.a .libesearch.a.stamp ar cr libesearch.a esearch__.o esearch___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libesearch.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libesearch.a /bin/ln -f .esearch.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.esearch.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /usr/pkg/bin/gmake -C espell -j2 --jobserver-auth=fifo:/tmp//GMfifo8261 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd espell all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... File espell.module not found. Using defaults... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo19568 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=espell MODULE_PATH=objtools/eutils/espell MODULE_ASN=espell.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m espell.dtd -M "" -oA \ -oc espell -or objtools/eutils/espell -odi -od espell.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd espell.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell TMPL=espell -j2 --jobserver-auth=fifo:/tmp//GMfifo19568 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell TMPL=espell -j2 --jobserver-auth=fifo:/tmp//GMfifo19568 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell TMPL=espell -j2 --jobserver-auth=fifo:/tmp//GMfifo19568 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell__.cpp -o espell__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell___.cpp -o espell___.o /bin/rm -f libespell.a .libespell.a.stamp ar cr libespell.a espell__.o espell___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libespell.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libespell.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libespell.a /bin/ln -f .espell.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.espell.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' /usr/pkg/bin/gmake -C esummary -j2 --jobserver-auth=fifo:/tmp//GMfifo8261 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd esummary all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... File esummary.module not found. Using defaults... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo17332 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=esummary MODULE_PATH=objtools/eutils/esummary MODULE_ASN=esummary.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m esummary.dtd -M "" -oA \ -oc esummary -or objtools/eutils/esummary -odi -od esummary.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd esummary.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j2 --jobserver-auth=fifo:/tmp//GMfifo17332 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j2 --jobserver-auth=fifo:/tmp//GMfifo17332 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j2 --jobserver-auth=fifo:/tmp//GMfifo17332 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary__.cpp -o esummary__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary___.cpp -o esummary___.o /bin/rm -f libesummary.a .libesummary.a.stamp ar cr libesummary.a esummary__.o esummary___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesummary.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libesummary.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libesummary.a /bin/ln -f .esummary.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.esummary.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /usr/pkg/bin/gmake -C linkout -j2 --jobserver-auth=fifo:/tmp//GMfifo8261 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/linkout' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/linkout' /usr/pkg/bin/gmake -C einfo -j2 --jobserver-auth=fifo:/tmp//GMfifo8261 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd einfo all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... File einfo.module not found. Using defaults... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo28273 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=einfo MODULE_PATH=objtools/eutils/einfo MODULE_ASN=einfo.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m einfo.dtd -M "" -oA \ -oc einfo -or objtools/eutils/einfo -odi -od einfo.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd einfo.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j2 --jobserver-auth=fifo:/tmp//GMfifo28273 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j2 --jobserver-auth=fifo:/tmp//GMfifo28273 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j2 --jobserver-auth=fifo:/tmp//GMfifo28273 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo__.cpp -o einfo__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o /bin/rm -f libeinfo.a .libeinfo.a.stamp ar cr libeinfo.a einfo__.o einfo___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libeinfo.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libeinfo.a /bin/ln -f .einfo.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.einfo.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /usr/pkg/bin/gmake -C uilist -j2 --jobserver-auth=fifo:/tmp//GMfifo8261 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd uilist all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... File uilist.module not found. Using defaults... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo26596 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=uilist MODULE_PATH=objtools/eutils/uilist MODULE_ASN=uilist.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m uilist.dtd -M "" -oA \ -oc uilist -or objtools/eutils/uilist -odi -od uilist.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd uilist.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j2 --jobserver-auth=fifo:/tmp//GMfifo26596 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j2 --jobserver-auth=fifo:/tmp//GMfifo26596 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j2 --jobserver-auth=fifo:/tmp//GMfifo26596 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist__.cpp -o uilist__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist___.cpp -o uilist___.o /bin/rm -f libuilist.a .libuilist.a.stamp ar cr libuilist.a uilist__.o uilist___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libuilist.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libuilist.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libuilist.a /bin/ln -f .uilist.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.uilist.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /usr/pkg/bin/gmake -C ehistory -j2 --jobserver-auth=fifo:/tmp//GMfifo8261 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd ehistory all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... File ehistory.module not found. Using defaults... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo28951 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ehistory MODULE_PATH=objtools/eutils/ehistory MODULE_ASN=ehistory.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m ehistory.dtd -M "" -oA \ -oc ehistory -or objtools/eutils/ehistory -odi -od ehistory.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ehistory.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j2 --jobserver-auth=fifo:/tmp//GMfifo28951 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j2 --jobserver-auth=fifo:/tmp//GMfifo28951 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j2 --jobserver-auth=fifo:/tmp//GMfifo28951 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp -o ehistory__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp -o ehistory___.o /bin/rm -f libehistory.a .libehistory.a.stamp ar cr libehistory.a ehistory__.o ehistory___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libehistory.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libehistory.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libehistory.a /bin/ln -f .ehistory.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ehistory.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /usr/pkg/bin/gmake -C efetch -j2 --jobserver-auth=fifo:/tmp//GMfifo8261 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test/Makefile cd /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch && /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --xsd efetch all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. [2] Terminated ${script_dir}/check_exec_guard.sh ${timeout} $... File efetch.module not found. Using defaults... /usr/pkg/bin/gmake -j2 --jobserver-auth=fifo:/tmp//GMfifo24996 -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=efetch MODULE_PATH=objtools/eutils/efetch MODULE_ASN=efetch.xsd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m efetch.xsd -M "" -oA \ -oc efetch -or objtools/eutils/efetch -odi -od efetch.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd efetch.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j2 --jobserver-auth=fifo:/tmp//GMfifo24996 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j2 --jobserver-auth=fifo:/tmp//GMfifo24996 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j2 --jobserver-auth=fifo:/tmp//GMfifo24996 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp:282: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/PubmedArticle.cpp: In function 'std::string eutils::{anonymous}::utf8_to_string(const string&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/PubmedArticle.cpp:157:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] 157 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch___.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp -o efetch__.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch___.cpp -o efetch___.o /bin/rm -f libefetch.a .libefetch.a.stamp ar cr libefetch.a efetch__.o efetch___.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libefetch.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libefetch.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libefetch.a /bin/ln -f .efetch.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.efetch.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo24996 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /usr/pkg/bin/gmake -C api -j2 --jobserver-auth=fifo:/tmp//GMfifo8261 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api TMPL=eutils -j2 --jobserver-auth=fifo:/tmp//GMfifo7593 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api TMPL=eutils -j2 --jobserver-auth=fifo:/tmp//GMfifo7593 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api TMPL=eutils -j2 --jobserver-auth=fifo:/tmp//GMfifo7593 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp: In member function 'virtual ncbi::CRef ncbi::CEFetch_Request::FetchIdList(int)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp:133:12: warning: catching polymorphic type 'class ncbi::CSerialException' by value [-Wcatch-value=] 133 | catch (CSerialException) { | ^~~~~~~~~~~~~~~~ gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/eutils.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/einfo.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esearch.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/egquery.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/epost.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/elink.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esummary.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/espell.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/ehistory.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/eutils.cpp -o eutils.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp -o efetch.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/einfo.cpp -o einfo.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esearch.cpp -o esearch.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/egquery.cpp -o egquery.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/epost.cpp -o epost.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/elink.cpp -o elink.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esummary.cpp -o esummary.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/espell.cpp -o espell.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/ehistory.cpp -o ehistory.o /bin/rm -f libeutils.a .libeutils.a.stamp ar cr libeutils.a eutils.o efetch.o einfo.o esearch.o egquery.o epost.o elink.o esummary.o espell.o ehistory.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libeutils.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libeutils.a /bin/ln -f .eutils.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.eutils.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' /usr/pkg/bin/gmake -C edit -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/unit_test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/unit_test/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubmed_fetch/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubmed_citmatch/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test_remote_updater/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater/Makefile gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit TMPL=edit -j2 --jobserver-auth=fifo:/tmp//GMfifo13738 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit TMPL=edit -j2 --jobserver-auth=fifo:/tmp//GMfifo13738 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit TMPL=edit -j2 --jobserver-auth=fifo:/tmp//GMfifo13738 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gene_utils.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/field_handler.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/apply_object.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/string_constraint.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/dblink_field.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/struc_comm_field.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_desc_field.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gb_block_field.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/loc_edit.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/mail_report.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feattable_edit.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/source_edit.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/rna_edit.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/eutils_updater.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/publication_edit.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gap_trim.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/external_annots.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/e/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int, bool, int, int, int)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1850:71: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1850 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { | ~~~~~~^~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1852:74: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1852 | } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { | ~~~~~~^~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1875:63: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1875 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { | ~~~~~~^~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1877:66: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1877 | } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { | ~~~~~~^~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSequenceAndAnnotation(ncbi::objects::CBioseq_Handle, const TCuts&, ncbi::objects::edit::EInternalTrimType)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2185:14: warning: variable 'cds_range' set but not used [-Wunused-but-set-variable] 2185 | auto cds_range = copy_feat->GetLocation().GetTotalRange(); | ^~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::UpdateSeqLength(ncbi::CAutoInitRef&, ncbi::objects::CBioseq_Handle&, ncbi::objects::CSeqMap_CI&, ncbi::objects::CSeq_inst_Base::TLength&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:12: warning: enumeration value 'eSeqSubMap' not handled in switch [-Wswitch] 2459 | switch (seqmap_ci.GetType()) { | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:12: warning: enumeration value 'eSeqRef' not handled in switch [-Wswitch] /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:12: warning: enumeration value 'eSeqEnd' not handled in switch [-Wswitch] /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:12: warning: enumeration value 'eSeqChunk' not handled in switch [-Wswitch] /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:12: warning: enumeration value 'eSeqLiteral' not handled in switch [-Wswitch] /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'bool ncbi::objects::edit::s_FindSegment(const ncbi::objects::CDense_seg&, ncbi::objects::CDense_seg_Base::TDim, ncbi::TSeqPos, ncbi::objects::CDense_seg_Base::TNumseg&, ncbi::TSeqPos&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2882:21: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] 2882 | if (pos >= start && pos < start + len) { | ~~~~^~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2882:39: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] 2882 | if (pos >= start && pos < start + len) { | ~~~~^~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqAlign(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:3086:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] 3086 | else if (seg_start < cut_from) { | ~~~~~~~~~~^~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:3089:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] 3089 | else if (seg_start >= cut_from && | ~~~~~~~~~~^~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp: In member function 'void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, ncbi::objects::edit::CPromote::TRnaMap*) const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp:228:68: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] 228 | remove_trailingX); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp:52: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:966:17: note: declared here 966 | static void TranslateCdregion(string& prot, | ^~~~~~~~~~~~~~~~~ dit/feature_propagate.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_edit.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pub_fix.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file_process.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_loader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp -o promote.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp: In constructor 'ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] 92 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:35, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag_.hpp:43, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag.hpp:44, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:5461:11: note: declared here 5461 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, | ^~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp: In static member function 'static std::vector > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:87: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] 171 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:35, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag_.hpp:43, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag.hpp:44, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:5461:11: note: declared here 5461 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, | ^~~~ f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/field_handler.cpp -o field_handler.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/apply_object.cpp -o apply_object.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-sr/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp:457:82: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] 457 | any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp:463:75: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] 463 | AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/rna_edit.cpp:259:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 259 | for (int j = i + 1; j < spans.size(); j++) | ~~^~~~~~~~~~~~~~ c/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/mail_report.cpp -o mail_report.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/source_edit.cpp -o source_edit.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o /home/pbulk/build-disk/biology/ncbi-blast+/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp: In member function 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::CSeqdesc&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:356:38: warning: 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::edit::CRemoteUpdater::FLogger, ncbi::objects::CSeqdesc&)' is deprecated [-Wdeprecated-declarations] 356 | UpdateOrgFromTaxon(m_logger, desc); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:318:6: note: declared here 318 | void CRemoteUpdater::UpdateOrgFromTaxon(FLogger logger, CSeqdesc& desc) | ^~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp: In member function 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::CSeq_entry&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:586:39: warning: 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::edit::CRemoteUpdater::FLogger, ncbi::objects::CSeq_entry&)' is deprecated [-Wdeprecated-declarations] 586 | UpdateOrgFromTaxon(m_logger, entry); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:552:6: note: declared here 552 | void CRemoteUpdater::UpdateOrgFromTaxon(FLogger logger, CSeq_entry& entry) | ^~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp: In member function 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::edit::CRemoteUpdater::FLogger, ncbi::objects::CSeq_entry_EditHandle&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:593:59: warning: 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::edit::CRemoteUpdater::FLogger, ncbi::objects::CSeqdesc&)' is deprecated [-Wdeprecated-declarations] 593 | UpdateOrgFromTaxon(logger, (CSeqdesc&)*desc_it); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:318:6: note: declared here 318 | void CRemoteUpdater::UpdateOrgFromTaxon(FLogger logger, CSeqdesc& desc) | ^~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const string&, const string&, ncbi::SIZE_TYPE, bool, bool)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp:47:73: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] 47 | pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/parse_text_options.hpp:34, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp:33: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:5461:11: note: declared here 5461 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, | ^~~~ /work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/eutils_updater.cpp -o eutils_updater.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: 'std::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const string&)' defined but not used [-Wunused-function] 336 | static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) | ^~~~~~~~~~~~~~~~~~~~~~~~ -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/external_annots.cpp -o external_annots.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feature_propagate.cpp -o feature_propagate.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_edit.cpp -o seq_edit.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pub_fix.cpp -o pub_fix.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_reader.cpp -o huge_asn_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file.cpp -o huge_file.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file_process.cpp -o huge_file_process.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_loader.cpp -o huge_asn_loader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp -o huge_asn_macro_reader.o /bin/rm -f libxobjedit.a .libxobjedit.a.stamp ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o eutils_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o pub_fix.o huge_asn_reader.o huge_file.o huge_file_process.o huge_asn_loader.o huge_asn_macro_reader.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjedit.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjedit.a /bin/ln -f .xobjedit.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjedit.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /usr/pkg/bin/gmake -C unit_test -j2 --jobserver-auth=fifo:/tmp//GMfifo13738 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test' /usr/pkg/bin/gmake -C pubmed_fetch -j2 --jobserver-auth=fifo:/tmp//GMfifo13738 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch' /usr/pkg/bin/gmake -C pubmed_citmatch -j2 --jobserver-auth=fifo:/tmp//GMfifo13738 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch' /usr/pkg/bin/gmake -C test_remote_updater -j2 --jobserver-auth=fifo:/tmp//GMfifo13738 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /usr/pkg/bin/gmake -C cleanup -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup/test/Makefile gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup TMPL=cleanup -j2 --jobserver-auth=fifo:/tmp//GMfifo11072 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup TMPL=cleanup -j2 --jobserver-auth=fifo:/tmp//GMfifo11072 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup TMPL=cleanup -j2 --jobserver-auth=fifo:/tmp//GMfifo11072 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_author.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_pub.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_message.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/influenza_set.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp:2909:68: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 2909 | if (abs((long int)this_start - (long int)prev_end) < min_len) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::DecodeXMLMarkChanged(std::string&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp:4192:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 4192 | idx < sizeof(transformations)/sizeof(transformations[0]); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp: In static member function 'static bool ncbi::objects::CCleanup::s_AddNumToUserField(ncbi::objects::CUser_field&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:398:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 398 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetStrs().size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:404:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 404 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetInts().size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:410:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 410 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetReals().size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:416:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] 416 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetOss().size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_RemoveFlankingQuotes(std::string&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:5939:22: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 5939 | for( ; first_pos <= last_pos ; ++first_pos, --last_pos ) { | ~~~~~~~~~~^~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:5953:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 5953 | if( first_pos > last_pos ) { | ~~~~~~~~~~^~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::CapitalizeAfterApostrophe(std::string&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp:914:25: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 914 | if (rslt[0] != start) | ~~~~~~~~^~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixAffiliationShortWordsInElement(std::string&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp:953:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 953 | if (rslt[0] != start) | ~~~~~~~~^~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixOrdinalNumbers(std::string&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp:980:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 980 | if (rslt[0] != start) | ~~~~~~~~^~~~~~~~ /build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_pub.cpp -o cleanup_pub.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp -o fix_feature_id.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp -o huge_file_cleanup.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/influenza_set.cpp -o influenza_set.o /bin/rm -f libxcleanup.a .libxcleanup.a.stamp ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o huge_file_cleanup.o influenza_set.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcleanup.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcleanup.a /bin/ln -f .xcleanup.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcleanup.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo11072 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/pkg/bin/gmake -C format -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format TMPL=xformat -j2 --jobserver-auth=fifo:/tmp//GMfifo1701 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format TMPL=xformat -j2 --jobserver-auth=fifo:/tmp//GMfifo1701 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format TMPL=xformat -j2 --jobserver-auth=fifo:/tmp//GMfifo1701 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/basecount_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/accession_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/contig_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/date_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/dbsource_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/defline_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/feature_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ctrl_items.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/locus_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/reference_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/segment_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sequence_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/version_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/wgs_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/tsa_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_seqloc.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/context.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_gather.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_gather.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_formatter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_formatter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/format_item_ostream.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_ostream.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/origin_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_gather.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_formatter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gbseq_formatter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_config.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/alignment_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gap_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_project_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sam_formatter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/cigar_formatter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_iter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/html_anchor_item.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/inst_info_map.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gene_finder.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_qual_slots.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp: In function 'void ncbi::objects::s_GetAssemblyInfo(const ncbi::objects::CBioseqContext&, std::string&, const ncbi::objects::CUser_object&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp:469:16: warning: unused variable 'is_html' [-Wunused-variable] 469 | const bool is_html = ctx.Config().DoHTML(); | ^~~~~~~ -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp -o comment_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/date_item.cpp -o date_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/buil/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/feature_item.cpp: In function 'const string& ncbi::objects::s_AaName(int)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/feature_item.cpp:2155:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 2155 | if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ d-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_item.cpp -o genome_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/fo/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp: In member function 'virtual void ncbi::objects::CKeywordsItem::x_GatherInfo(ncbi::objects::CBioseqContext&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp:345:18: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] 345 | } catch (CException) { | ^~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp:300:63: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] 300 | if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp:301:28: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] 301 | if (this_start < (15 + last_stop) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ rmat/locus_item.cpp -o locus_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp -o primary_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/reference_item.cpp -o reference_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/segment_item.cpp -o segment_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp -o source_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_GatherInfoIdx(ncbi::objects::CBioseqContext&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp:183:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 183 | for (int i = 0; i < sizeof (legal_organelles) / sizeof (const char*); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp:388:21: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CBioSource_Base::TGenome' {aka 'int'} and 'const unsigned int' [-Wsign-compare] 388 | if ( genome >= s_organelle_prefix_size ) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp: In member function 'virtual void ncbi::objects::CFlatSeqIdQVal::Format(ncbi::objects::TFlatQuals&, const ncbi::CTempString&, ncbi::objects::CBioseqContext&, ncbi::objects::IFlatQVal::TFlags) const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp:1105:10: warning: unused variable 'bHtml' [-Wunused-variable] 1105 | bool bHtml = ctx.Config().DoHTML(); | ^~~~~ 64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/version_item.cpp -o version_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp:970:13: warning: 'bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)' defined but not used [-Wunused-function] 970 | static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) | ^~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_submit&, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:536:32: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 536 | Generate(entry, item_os); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here 197 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CBioseq&, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:548:28: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 548 | Generate(entry, item_os); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here 197 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:574:28: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 574 | Generate(entry, item_os); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here 197 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CFlatItemOStream&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:583:28: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 583 | Generate(entry, item_os); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here 197 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_id&, const TRange&, ncbi::objects::ENa_strand, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:604:38: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 604 | Generate(*loc, scope, item_os); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:552:6: note: declared here 552 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_submit&, ncbi::objects::CScope&, ncbi::CNcbiOstream&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:1003:37: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_submit&, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 1003 | Generate(submit, scope, *item_os); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:509:6: note: declared here 509 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CBioseq&, ncbi::objects::CScope&, ncbi::CNcbiOstream&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:1017:29: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 1017 | Generate(entry, *item_os); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here 197 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::CNcbiOstream&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:1028:29: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 1028 | Generate(entry, *item_os); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here 197 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CBioseq_Handle&, ncbi::CNcbiOstream&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:1040:29: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 1040 | Generate(entry, *item_os); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here 197 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope&, ncbi::CNcbiOstream&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:1052:34: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 1052 | Generate(loc, scope, *item_os); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:552:6: note: declared here 552 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_id&, const TRange&, ncbi::objects::ENa_strand, ncbi::objects::CScope&, ncbi::CNcbiOstream&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:1066:48: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_id&, const TRange&, ncbi::objects::ENa_strand, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 1066 | Generate(id, range, strand, scope, *item_os); | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:587:6: note: declared here 587 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ 981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/context.cpp -o context.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp -o gather_items.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopen/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp: In member function 'virtual void ncbi::objects::CGenbankFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp:1990:18: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] 1990 | } catch (CSeqVectorException) { | ^~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp:2031:26: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] 2031 | } catch (CSeqVectorException) { | ^~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp: At global scope: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp:285:15: warning: 'std::string ncbi::objects::s_get_anchor_html(const string&, ncbi::TGi)' defined but not used [-Wunused-function] 285 | static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) | ^~~~~~~~~~~~~~~~~ mp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/origin_item.cpp -o origin_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxformat.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxformat.a /bin/ln -f .xformat.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xformat.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /usr/pkg/bin/gmake -C validator -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/validator' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/validator' /usr/pkg/bin/gmake -C asniotest -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/asniotest' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/asniotest' /usr/pkg/bin/gmake -C align -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align' /usr/pkg/bin/gmake -C seqmasks_io -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test/Makefile gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j2 --jobserver-auth=fifo:/tmp//GMfifo4617 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j2 --jobserver-auth=fifo:/tmp//GMfifo4617 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j2 --jobserver-auth=fifo:/tmp//GMfifo4617 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqmasks_io.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqmasks_io.a /bin/ln -f .seqmasks_io.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqmasks_io.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/pkg/bin/gmake -C unit_test -j2 --jobserver-auth=fifo:/tmp//GMfifo4617 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/pkg/bin/gmake -C align_format -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format TMPL=align_format -j2 --jobserver-auth=fifo:/tmp//GMfifo16128 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format TMPL=align_format -j2 --jobserver-auth=fifo:/tmp//GMfifo16128 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format TMPL=align_format -j2 --jobserver-auth=fifo:/tmp//GMfifo16128 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/align_format_util.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/format_flags.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showdefline.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/tabular.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/taxFormat.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/aln_printer.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr//home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp: In member function 'void ncbi::align_format::CDisplaySeqalign::DisplaySeqalign(ncbi::CNcbiOstream&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp:2104:33: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] 2104 | } catch (CException e){ | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp: In member function 'void ncbi::align_format::CVecscreen::x_MergeSeqalign(ncbi::objects::CSeq_align_set&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp:448:35: warning: unused variable 'da' [-Wunused-variable] 448 | const CSeq_align& da = *x_OrigAlignsById[*di]; | ^~ pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.a .libalign_format.a.stamp ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libalign_format.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libalign_format.a /bin/ln -f .align_format.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.align_format.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/pkg/bin/gmake -C unit_test -j2 --jobserver-auth=fifo:/tmp//GMfifo16128 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Nothing to be done for 'mark-as-disabled_r'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/pkg/bin/gmake -C snputil -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/snputil' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/snputil' /usr/pkg/bin/gmake -C uudutil -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/uudutil' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/uudutil' /usr/pkg/bin/gmake -C variation -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/variation' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/variation' /usr/pkg/bin/gmake -C writers -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/writers' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/writers' /usr/pkg/bin/gmake -C import -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/import' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/import' /usr/pkg/bin/gmake -C flatfile -j2 --jobserver-auth=fifo:/tmp//GMfifo1083 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/flatfile' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/flatfile' gmake[2]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' /usr/pkg/bin/gmake -C ctools -j2 --jobserver-auth=fifo:/tmp//GMfifo7917 all_r || exit 5 gmake[2]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/ctools' gmake[2]: warning: -j2 forced in submake: resetting jobserver mode. gmake[2]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/ctools' /usr/pkg/bin/gmake -C sra -j2 --jobserver-auth=fifo:/tmp//GMfifo7917 all_r || exit 5 gmake[2]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' gmake[2]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project sra due to unmet requirements: VDB gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /usr/pkg/bin/gmake -C readers -j2 --jobserver-auth=fifo:/tmp//GMfifo29751 mark-as-disabled_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. /usr/pkg/bin/gmake -C sra -j2 --jobserver-auth=fifo:/tmp//GMfifo16470 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sra/readers/sra TMPL=sraread -j2 --jobserver-auth=fifo:/tmp//GMfifo1413 mark-as-disabled gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sra/readers/sra TMPL=srareadx -j2 --jobserver-auth=fifo:/tmp//GMfifo1413 mark-as-disabled gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /usr/pkg/bin/gmake -C bam -j2 --jobserver-auth=fifo:/tmp//GMfifo16470 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sra/readers/bam TMPL=bamread -j2 --jobserver-auth=fifo:/tmp//GMfifo29776 mark-as-disabled gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers' /usr/pkg/bin/gmake -C data_loaders -j2 --jobserver-auth=fifo:/tmp//GMfifo29751 mark-as-disabled_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. /usr/pkg/bin/gmake -C sra -j2 --jobserver-auth=fifo:/tmp//GMfifo20456 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' NOTE: skipping project "ncbi_xloader_sra" due to unmet requirements gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo16744 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra/test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra/test' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' /usr/pkg/bin/gmake -C bam -j2 --jobserver-auth=fifo:/tmp//GMfifo20456 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' NOTE: skipping project "ncbi_xloader_bam" due to unmet requirements gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo664 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam/test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam/test' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' /usr/pkg/bin/gmake -C csra -j2 --jobserver-auth=fifo:/tmp//GMfifo20456 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' NOTE: skipping project "ncbi_xloader_csra" due to unmet requirements gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo20379 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra/test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra/test' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' /usr/pkg/bin/gmake -C wgs -j2 --jobserver-auth=fifo:/tmp//GMfifo20456 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' NOTE: skipping project "ncbi_xloader_wgs" due to unmet requirements gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' /usr/pkg/bin/gmake -C vdbgraph -j2 --jobserver-auth=fifo:/tmp//GMfifo20456 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' NOTE: skipping project "ncbi_xloader_vdbgraph" due to unmet requirements gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo17396 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph/test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph/test' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' /usr/pkg/bin/gmake -C snp -j2 --jobserver-auth=fifo:/tmp//GMfifo20456 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' NOTE: skipping project "ncbi_xloader_snp" due to unmet requirements gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' /usr/pkg/bin/gmake -C test -j2 --jobserver-auth=fifo:/tmp//GMfifo29028 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp/test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp/test' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders' /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' gmake[2]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' /usr/pkg/bin/gmake -C algo -j2 --jobserver-auth=fifo:/tmp//GMfifo7917 all_r || exit 5 gmake[2]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' gmake[2]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/sequence/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/align/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/sequence/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/sequence/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/align/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/align/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/structure/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/gnomon/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/structure/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/structure/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/gnomon/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/gnomon/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/tree/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/phy_tree/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/tree/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/tree/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/seqqa/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/phy_tree/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/phy_tree/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/seqqa/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/seqqa/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/cobalt/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/text/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/cobalt/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/cobalt/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/volume_merge/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/text/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/text/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/volume_merge/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/volume_merge/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/primer/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/id_mapper/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/primer/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/primer/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT sequence/Makefile test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/id_mapper/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/id_mapper/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT align/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/align/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/sequence/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT structure/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gnomon/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/structure/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/gnomon/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT tree/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT phy_tree/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/tree/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/phy_tree/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT seqqa/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cobalt/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/cobalt/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/seqqa/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT text/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT volume_merge/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/text/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/volume_merge/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT primer/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT id_mapper/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/primer/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/id_mapper/Makefile /usr/pkg/bin/gmake -C dustmask -j2 --jobserver-auth=fifo:/tmp//GMfifo3949 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j2 --jobserver-auth=fifo:/tmp//GMfifo1065 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j2 --jobserver-auth=fifo:/tmp//GMfifo1065 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j2 --jobserver-auth=fifo:/tmp//GMfifo1065 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask/symdust.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp ar cr libxalgodustmask.a symdust.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgodustmask.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgodustmask.a /bin/ln -f .xalgodustmask.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgodustmask.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /usr/pkg/bin/gmake -C winmask -j2 --jobserver-auth=fifo:/tmp//GMfifo3949 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -j2 --jobserver-auth=fifo:/tmp//GMfifo13706 export-headers gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -j2 --jobserver-auth=fifo:/tmp//GMfifo13706 flag-stamps gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -j2 --jobserver-auth=fifo:/tmp//GMfifo13706 all gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_util.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_config.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/p/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] 130 | string id_str = sequence::GetTitle( bsh ); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:290:8: note: declared here 290 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); | ^~~~~~~~ kg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgowinmask.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgowinmask.dep gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /usr/pkg/bin/gmake -C sequence -j2 --jobserver-auth=fifo:/tmp//GMfifo3949 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/sequence' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/sequence' /usr/pkg/bin/gmake -C blast -j2 --jobserver-auth=fifo:/tmp//GMfifo3949 all_r || exit 5 gmake[3]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' gmake[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in` /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT dbindex_search/Makefile test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT blast_sra_input/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search/Makefile /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gumbel_params/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params/Makefile /usr/pkg/bin/gmake -C composition_adjustment -j2 --jobserver-auth=fifo:/tmp//GMfifo11101 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j2 --jobserver-auth=fifo:/tmp//GMfifo432 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j2 --jobserver-auth=fifo:/tmp//GMfifo432 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j2 --jobserver-auth=fifo:/tmp//GMfifo432 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] 137 | s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) | ^~~~~~~~~~~~~~~~~~ gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /home/pbulk/b/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] 200 | s_DistinctAlignmentsLength(BlastCompo_Alignment * list) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] 185 | s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) | ^~~~~~~~~~~~~~~~~~~~~ uild-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libcomposition_adjustment.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcomposition_adjustment.a /bin/ln -f .composition_adjustment.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.composition_adjustment.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/pkg/bin/gmake -C core -j2 --jobserver-auth=fifo:/tmp//GMfifo11101 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core TMPL=blast -j2 --jobserver-auth=fifo:/tmp//GMfifo17453 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core TMPL=blast -j2 --jobserver-auth=fifo:/tmp//GMfifo17453 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core TMPL=blast -j2 --jobserver-auth=fifo:/tmp//GMfifo17453 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_diagnostics.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/aa_ungapped.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_engine.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_extend.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_filter.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_gapalign.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hits.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hspstream.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_itree.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_lookup.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_aalookup.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_aascan.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_nalookup.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_nascan.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_message.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_options.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/na_ungapped.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi_priv.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_seg.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_seqsrc.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_setup.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_traceback.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_util.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/gapinfo.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/greedy_align.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_collector.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_besthit.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_culling.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/link_hsps.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/lookup_util.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/lookup_wrap.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/matrix_freq_ratios.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/ncbi_std.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/ncbi_math.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_encoding.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/pattern.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_extend.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_gapalign.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_lookup.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_parameters.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_posit.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_program.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_query_info.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_tune.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_sw.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_dynarray.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/split_query.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/gencode_singleton.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/index_ungapped.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/boost_erf.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/jumper.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_mapper.c. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/spliced_hits.c. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c: In function 'Blast_RedoAlignmentCore_MT': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c:3431:11: warning: unused variable 'my_stderr' [-Wunused-variable] 3431 | FILE *my_stderr = stderr; | ^~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c:3004:27: warning: unused variable 'forbidden' [-Wunused-variable] 3004 | Blast_ForbiddenRanges forbidden = {0,}; | ^~~~~~~~~ .c -o blast_kappa.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_message.c -o blast_message.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_options.c -o blast_options.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blastIn file included from /usr/include/ctype.h:100, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/core/ncbi_std.h:44, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/core/blast_stat.h:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:51: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c: In function 'BlastScoreBlkNucleotideMatrixRead': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:1194:31: warning: array subscript has type 'char' [-Wchar-subscripts] 1194 | while( (*cp) && isspace(*cp) ) cp++; | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:1201:35: warning: array subscript has type 'char' [-Wchar-subscripts] 1201 | while( (*cp) && isspace(*cp) ) cp++; | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:1236:20: warning: array subscript has type 'char' [-Wchar-subscripts] 1236 | if ( isalpha(*cp) && !alphabet[0] ) { | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:1246:26: warning: array subscript has type 'char' [-Wchar-subscripts] 1246 | }else if ( isalpha(*cp) ) { | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:1250:33: warning: array subscript has type 'char' [-Wchar-subscripts] 1250 | while( (*cp) && isspace(*cp) ) cp++; | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c:1254:20: warning: array subscript has type 'char' [-Wchar-subscripts] 1254 | if ( isdigit(*cp) || *cp == '-' ) { | ^ -2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_util.c: In function 'BlastProgram2Number': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_util.c:306:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 306 | else if (strcasecmp("mapper", program) == 0) | ^~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 309 | return 0; | ^~~~~~ /src/algo/blast/core/blast_util.c -o blast_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/ncbi_std.c -o ncbi_std.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/pattern.c -o pattern.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/wIn file included from /usr/include/ctype.h:100, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/core/ncbi_std.h:44, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/core/phi_lookup.h:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_lookup.c:35: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_lookup.c: In function 's_MakePatternUpperCase': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_lookup.c:379:53: warning: array subscript has type 'char' [-Wchar-subscripts] 379 | pattern_out[index] = toupper(pattern_in[index]); | ^ ork/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_program.c -o blast_program.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/split_query.c -o split_query.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/jumper.c -o jumper.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o /bin/rm -f libblast.a .libblast.a.stamp ar cr libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblast.a /bin/ln -f .blast.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blast.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /usr/pkg/bin/gmake -C dbindex -j2 --jobserver-auth=fifo:/tmp//GMfifo11101 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j2 --jobserver-auth=fifo:/tmp//GMfifo15534 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j2 --jobserver-auth=fifo:/tmp//GMfifo15534 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j2 --jobserver-auth=fifo:/tmp//GMfifo15534 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 52 | objects::CFastaReader::fAllSeqIds; | ^~~~~~~~~~ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 52 | objects::CFastaReader::fAllSeqIds; | ^~~~~~~~~~ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] 306 | unsigned long tmp; | ^~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] 658 | string idstr = objects::sequence::GetTitle( bsh ); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:290:8: note: declared here 290 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); | ^~~~~~~~ gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgoblastdbindex.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgoblastdbindex.a /bin/ln -f .xalgoblastdbindex.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgoblastdbindex.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/pkg/bin/gmake -C makeindex -j2 --jobserver-auth=fifo:/tmp//GMfifo15534 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -j2 --jobserver-auth=fifo:/tmp//GMfifo18935 flag-stamps gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -j2 --jobserver-auth=fifo:/tmp//GMfifo18935 all gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 main.o mkindex_app.o -Wl,-rpath-link,/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o makembindex strip makembindex /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f makembindex /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/makembindex gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/pkg/bin/gmake -C dbindex_search -j2 --jobserver-auth=fifo:/tmp//GMfifo11101 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' /usr/pkg/bin/gmake -C api -j2 --jobserver-auth=fifo:/tmp//GMfifo11101 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api TMPL=xblast -j2 --jobserver-auth=fifo:/tmp//GMfifo19339 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api TMPL=xblast -j2 --jobserver-auth=fifo:/tmp//GMfifo19339 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api TMPL=xblast -j2 --jobserver-auth=fifo:/tmp//GMfifo19339 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_options.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastx_options.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastx_options.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastn_options.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/pssm_engine.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_blast.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bl2seq.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_mtlock.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psibl2seq.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_db_adapter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_impl.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_iteration.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psi_pssm_input.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux_priv.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_advprot_options.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/version.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/dust_filter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rps_aux.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/search_strategy.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/setup_factory.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/prelim_stage.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/traceback_stage.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/uniform_search.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_search.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_results.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_search.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/query_data.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgr_query_data.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_dbindex.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_blk.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/winmask_filter.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seedtop.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast_options.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast_options.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_node.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_usage_report.cpp. Updating dependency information for .core_aa_ungapped.c. Updating dependency information for .core_blast_diagnostics.c. Updating dependency information for .core_blast_engine.c. Updating dependency information for .core_blast_extend.c. Updating dependency information for .core_blast_filter.c. Updating dependency information for .core_blast_gapalign.c. Updating dependency information for .core_blast_hits.c. Updating dependency information for .core_blast_hspstream.c. Updating dependency information for .core_blast_itree.c. Updating dependency information for .core_blast_kappa.c. Updating dependency information for .core_blast_lookup.c. Updating dependency information for .core_blast_aalookup.c. Updating dependency information for .core_blast_aascan.c. Updating dependency information for .core_blast_nalookup.c. Updating dependency information for .core_blast_nascan.c. Updating dependency information for .core_blast_message.c. Updating dependency information for .core_blast_options.c. Updating dependency information for .core_blast_psi.c. Updating dependency information for .core_na_ungapped.c. Updating dependency information for .core_blast_psi_priv.c. Updating dependency information for .core_blast_seg.c. Updating dependency information for .core_blast_seqsrc.c. Updating dependency information for .core_blast_setup.c. Updating dependency information for .core_blast_stat.c. Updating dependency information for .core_blast_traceback.c. Updating dependency information for .core_blast_util.c. Updating dependency information for .core_gapinfo.c. Updating dependency information for .core_greedy_align.c. Updating dependency information for .core_hspfilter_collector.c. Updating dependency information for .core_hspfilter_besthit.c. Updating dependency information for .core_hspfilter_culling.c. Updating dependency information for .core_link_hsps.c. Updating dependency information for .core_lookup_util.c. Updating dependency information for .core_lookup_wrap.c. Updating dependency information for .core_matrix_freq_ratios.c. Updating dependency information for .core_ncbi_std.c. Updating dependency information for .core_ncbi_math.c. Updating dependency information for .core_blast_encoding.c. Updating dependency information for .core_pattern.c. Updating dependency information for .core_phi_extend.c. Updating dependency information for .core_phi_gapalign.c. Updating dependency information for .core_phi_lookup.c. Updating dependency information for .core_blast_parameters.c. Updating dependency information for .core_blast_posit.c. Updating dependency information for .core_blast_program.c. Updating dependency information for .core_blast_query_info.c. Updating dependency information for .core_blast_tune.c. Updating dependency information for .core_blast_sw.c. Updating dependency information for .core_blast_dynarray.c. Updating dependency information for .core_split_query.c. Updating dependency information for .core_gencode_singleton.c. Updating dependency information for .core_index_ungapped.c. Updating dependency information for .core_blast_traceback_mt_priv.c. Updating dependency information for .core_blast_hspstream_mt_utils.c. Updating dependency information for .core_boost_erf.c. Updating dependency information for .core_jumper.c. Updating dependency information for .core_hspfilter_mapper.c. Updating dependency information for .core_spliced_hits.c. rm .core_blast_dynarray.c .core_blast_util.c .core_boost_erf.c .core_blast_posit.c .core_hspfilter_mapper.c .core_blast_itree.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_std.c .core_ncbi_math.c .core_blast_traceback.c .core_blast_stat.c .core_blast_seqsrc.c .core_blast_setup.c .core_index_ungapped.c .core_link_hsps.c .core_blast_engine.c .core_pattern.c .core_blast_filter.c .core_greedy_align.c .core_lookup_wrap.c .core_lookup_util.c .core_hspfilter_besthit.c .core_gencode_singleton.c .core_gapinfo.c .core_spliced_hits.c .core_blast_psi.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_aa_ungapped.c .core_blast_traceback_mt_priv.c .core_blast_hspstream_mt_utils.c .core_blast_aascan.c .core_blast_lookup.c .core_blast_diagnostics.c .core_phi_lookup.c .core_blast_nascan.c .core_blast_hspstream.c .core_blast_query_info.c .core_blast_gapalign.c .core_na_ungapped.c .core_blast_seg.c .core_phi_extend.c .core_blast_nalookup.c .core_split_query.c .core_blast_sw.c .core_blast_encoding.c .core_blast_tune.c .core_blast_psi_priv.c .core_jumper.c .core_blast_options.c .core_blast_aalookup.c .core_blast_extend.c .core_phi_gapalign.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c echo '#include "/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:100:36: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] 100 | return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:106:37: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] 106 | m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); | ^~~~~~~~~~~~~~~ c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/wo/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp: In member function 'bool ncbi::blast::CRemoteBlast::LoadFromArchive()': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp:1660:19: warning: ignoring return value of 'bool std::vector<_Tp, _Alloc>::empty() const [with _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]', declared with attribute 'nodiscard' [-Wunused-result] 1660 | m_Errs.empty(); | ~~~~~~~~~~~~^~ In file included from /usr/include/g++/vector:67, from /usr/include/g++/functional:62, from /usr/include/g++/pstl/glue_algorithm_defs.h:13, from /usr/include/g++/algorithm:74, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistl.hpp:180, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_limits.hpp:61, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbitime.hpp:65, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:36, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp:35: /usr/include/g++/bits/stl_vector.h:1007:7: note: declared here 1007 | empty() const _GLIBCXX_NOEXCEPT | ^~~~~ rk/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/i/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ReadAsciiMsa(ncbi::CNcbiIstream&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:125:32: warning: 'void ncbi::CAlnReader::Read(bool, bool, ncbi::objects::ILineErrorListener*)' is deprecated [-Wdeprecated-declarations] 125 | reader.Read(false, true); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:42: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/aln_reader.hpp:215:10: note: declared here 215 | void Read( | ^~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison of integer expressions of different signedness: 'int' and 'Uint4' {aka 'unsigned int'} [-Wsign-compare] 376 | while (k < m_Msa->dimensions->query_length && | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nclude/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp -o blastp_kmer_options.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/version.cpp -o version.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_search.cpp -o local_search.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/query_data.cpp -o query_data.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_node.cpp -o blast_node.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_usage_report.cpp -o blast_usage_report.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_aa_ungapped.c -o .core_aa_ungapped.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_diagnostics.c -o .core_blast_diagnostics.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_engine.c -o .core_blast_engine.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_extend.c -o .core_blast_extend.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_filter.c -o .core_blast_filter.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_gapalign.c -o .core_blast_gapalign.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_hits.c -o .core_blast_hits.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_hspstream.c -o .core_blast_hspstream.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/uIn file included from .core_blast_kappa.c:1: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c: In function 'Blast_RedoAlignmentCore_MT': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3431:11: warning: unused variable 'my_stderr' [-Wunused-variable] 3431 | FILE *my_stderr = stderr; | ^~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3004:27: warning: unused variable 'forbidden' [-Wunused-variable] 3004 | Blast_ForbiddenRanges forbidden = {0,}; | ^~~~~~~~~ sr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_itree.c -o .core_blast_itree.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_kappa.c -o .core_blast_kappa.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_lookup.c -o .core_blast_lookup.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_aalookup.c -o .core_blast_aalookup.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_aascan.c -o .core_blast_aascan.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_nalookup.c -o .core_blast_nalookup.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_nascan.c -o .core_blast_nascan.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_message.c -o .core_blast_message.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_options.c -o .core_blast_options.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_psi.c -o .core_blast_psi.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_na_ungapped.c -o .core_na_ungapped.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/includIn file included from /usr/include/ctype.h:100, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/core/ncbi_std.h:44, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/core/blast_stat.h:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:51, from .core_blast_stat.c:1: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c: In function 'BlastScoreBlkNucleotideMatrixRead': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1194:31: warning: array subscript has type 'char' [-Wchar-subscripts] 1194 | while( (*cp) && isspace(*cp) ) cp++; | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1201:35: warning: array subscript has type 'char' [-Wchar-subscripts] 1201 | while( (*cp) && isspace(*cp) ) cp++; | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1236:20: warning: array subscript has type 'char' [-Wchar-subscripts] 1236 | if ( isalpha(*cp) && !alphabet[0] ) { | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1246:26: warning: array subscript has type 'char' [-Wchar-subscripts] 1246 | }else if ( isalpha(*cp) ) { | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1250:33: warning: array subscript has type 'char' [-Wchar-subscripts] 1250 | while( (*cp) && isspace(*cp) ) cp++; | ^ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c:1254:20: warning: array subscript has type 'char' [-Wchar-subscripts] 1254 | if ( isdigit(*cp) || *cp == '-' ) { | ^ e -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_psi_priv.c -o .core_blast_psi_priv.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_seg.c -o .core_blast_seg.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_seqsrc.c -o .core_blast_seqsrc.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_setup.c -o .core_blast_setup.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_stat.c -o .core_blast_stat.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_traceback.c -o .core_blast_traceback.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-diskIn file included from .core_blast_util.c:1: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c: In function 'BlastProgram2Number': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c:306:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 306 | else if (strcasecmp("mapper", program) == 0) | ^~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 309 | return 0; | ^~~~~~ /biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_util.c -o .core_blast_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_gapinfo.c -o .core_gapinfo.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_greedy_align.c -o .core_greedy_align.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_hspfilter_collector.c -o .core_hspfilter_collector.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_hspfilter_besthit.c -o .core_hspfilter_besthit.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_hspfilter_culling.c -o .core_hspfilter_culling.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_link_hsps.c -o .core_link_hsps.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_lookup_util.c -o .core_lookup_util.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_lookup_wrap.c -o .core_lookup_wrap.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_matrix_freq_ratios.c -o .core_matrix_freq_ratios.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_ncbi_std.c -o .core_ncbi_std.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_ncbi_math.c -o .core_ncbi_math.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthreadIn file included from /usr/include/ctype.h:100, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/core/ncbi_std.h:44, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/core/phi_lookup.h:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c:35, from .core_phi_lookup.c:1: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c: In function 's_MakePatternUpperCase': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c:379:53: warning: array subscript has type 'char' [-Wchar-subscripts] 379 | pattern_out[index] = toupper(pattern_in[index]); | ^ -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_encoding.c -o .core_blast_encoding.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_pattern.c -o .core_pattern.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_phi_extend.c -o .core_phi_extend.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_phi_gapalign.c -o .core_phi_gapalign.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_phi_lookup.c -o .core_phi_lookup.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_parameters.c -o .core_blast_parameters.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_posit.c -o .core_blast_posit.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_program.c -o .core_blast_program.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_query_info.c -o .core_blast_query_info.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_tune.c -o .core_blast_tune.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_sw.c -o .core_blast_sw.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_dynarray.c -o .core_blast_dynarray.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_split_query.c -o .core_split_query.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_gencode_singleton.c -o .core_gencode_singleton.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_index_ungapped.c -o .core_index_ungapped.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_traceback_mt_priv.c -o .core_blast_traceback_mt_priv.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_blast_hspstream_mt_utils.c -o .core_blast_hspstream_mt_utils.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_boost_erf.c -o .core_boost_erf.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_jumper.c -o .core_jumper.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_hspfilter_mapper.c -o .core_hspfilter_mapper.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e .core_spliced_hits.c -o .core_spliced_hits.o /bin/rm -f libxblast.a .libxblast.a.stamp ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o blast_node.o blast_usage_report.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblast.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxblast.a /bin/ln -f .xblast.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xblast.dep rm .core_blast_dynarray.c .core_boost_erf.c .core_blast_itree.c .core_blast_engine.c .core_blast_filter.c .core_blast_seqsrc.c .core_lookup_wrap.c .core_ncbi_math.c .core_index_ungapped.c .core_gapinfo.c .core_hspfilter_besthit.c .core_gencode_singleton.c .core_spliced_hits.c .core_blast_psi.c .core_blast_hspstream_mt_utils.c .core_blast_diagnostics.c .core_blast_hspstream.c .core_blast_lookup.c .core_blast_nascan.c .core_na_ungapped.c .core_phi_extend.c .core_blast_nalookup.c .core_blast_psi_priv.c .core_blast_aalookup.c .core_blast_encoding.c .core_jumper.c .core_blast_util.c .core_blast_posit.c .core_hspfilter_mapper.c .core_hspfilter_culling.c .core_ncbi_std.c .core_blast_program.c .core_blast_traceback.c .core_blast_stat.c .core_blast_setup.c .core_link_hsps.c .core_greedy_align.c .core_pattern.c .core_lookup_util.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_aa_ungapped.c .core_blast_traceback_mt_priv.c .core_blast_aascan.c .core_phi_lookup.c .core_blast_query_info.c .core_blast_gapalign.c .core_blast_seg.c .core_split_query.c .core_blast_sw.c .core_blast_tune.c .core_blast_options.c .core_blast_extend.c .core_phi_gapalign.c gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /usr/pkg/bin/gmake -C proteinkmer -j2 --jobserver-auth=fifo:/tmp//GMfifo11101 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j2 --jobserver-auth=fifo:/tmp//GMfifo3963 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j2 --jobserver-auth=fifo:/tmp//GMfifo3963 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j2 --jobserver-auth=fifo:/tmp//GMfifo3963 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/b/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp: In function 'void ncbi::neighbor_query(const std::vector >&, const uint64_t*, std::vector >&, ncbi::blast::CMinHashFile&, int, int, double, ncbi::TBlastKmerPrelimScoreVector&, ncbi::BlastKmerStats&, int)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:806:17: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 806 | if (last_oid == *i) | ~~~~~~~~~^~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp: In member function 'void ncbi::blast::CMinHashFile::GetMinHits(int, int&, std::vector&) const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:18: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 77 | if (hits.size() < numHashes) | ~~~~~~~~~~~~^~~~~~~~~~~ uild-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o /bin/rm -f libproteinkmer.a .libproteinkmer.a.stamp ar cr libproteinkmer.a blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libproteinkmer.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libproteinkmer.a /bin/ln -f .proteinkmer.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.proteinkmer.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/pkg/bin/gmake -C unit_test -j2 --jobserver-auth=fifo:/tmp//GMfifo3963 all_r || exit 5 gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -j2 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/pkg/bin/gmake -C format -j2 --jobserver-auth=fifo:/tmp//GMfifo11101 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format TMPL=xblastformat -j2 --jobserver-auth=fifo:/tmp//GMfifo7508 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format TMPL=xblastformat -j2 --jobserver-auth=fifo:/tmp//GMfifo7508 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format TMPL=xblastformat -j2 --jobserver-auth=fifo:/tmp//GMfifo7508 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:88: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] 501 | unique_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:42, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/tempstr.hpp:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:39, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/object_manager.hpp:45, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); | ^~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' 1209 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED | ^~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function 'bool ncbi::s_SerializeAndSplitBy(const ncbi::CSerialObject&, const char*, std::string&, std::string&, bool, bool)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:91: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] 785 | unique_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:42, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/tempstr.hpp:38, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:39, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/object_manager.hpp:45, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); | ^~~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' 1209 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED | ^~~~ gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/build_archive.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/sam.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/cIn file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:49: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:37: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:51: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] 140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:37: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:42, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] 140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:42, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ ++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp: In member function 'virtual void* CBlastAsyncFormatThread::Main()': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp:122:28: warning: comparison of integer expressions of different signedness: 'std::map >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 122 | if (m_ResultsMap.size() != currNum) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/sam.cpp -o sam.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o /bin/rm -f libxblastformat.a .libxblastformat.a.stamp ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o /bin/sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblastformat.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxblastformat.a /bin/ln -f .xblastformat.dep /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xblastformat.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /usr/pkg/bin/gmake -C blastinput -j2 --jobserver-auth=fifo:/tmp//GMfifo11101 all_r || exit 5 gmake[4]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in` test -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /bin/cp -p /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo/Makefile gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j2 --jobserver-auth=fifo:/tmp//GMfifo14946 export-headers gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j2 --jobserver-auth=fifo:/tmp//GMfifo14946 flag-stamps gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/pkg/bin/gmake -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j2 --jobserver-auth=fifo:/tmp//GMfifo14946 all gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp. Updating dependency information for /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp. /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp: In constructor 'ncbi::blast::CIgBlastpAppArgs::CIgBlastpAppArgs()': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:67:16: warning: unused variable 'kFilterByDefault' [-Wunused-variable] 67 | const bool kFilterByDefault = false; | ^~~~~~~~~~~~~~~~ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp: In member function 'virtual void ncbi::blast::CMapperMTArgs::ExtractAlgorithmOptions(const ncbi::CArgs&, ncbi::blast::CBlastOptions&)': /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:60: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] 205 | const int kMaxValue = static_cast(GetCpuCount()); | ^ In file included from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbifile.hpp:53, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:39, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here 479 | unsigned int GetCpuCount(void) | ^~~~~~~~~~~ {standard input}: Assembler messages: {standard input}: Fatal error: can't write 9 bytes to section .text of magicblast_args.o: 'No space left on device' {standard input}: Fatal error: can't close magicblast_args.o: No space left on device gmake[5]: *** [/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.rules:103: magicblast_args.o] Error 1 gmake[5]: *** Waiting for unfinished jobs.... RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /home/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=2e7981ea-55b3-40fc-83a6-a8f298e8de8e /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' FAILED: src/algo/blast/blastinput/Makefile.blastinput.lib gmake[5]: Entering directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j2 forced in submake: resetting jobserver mode. /bin/rm -f libblastinput.a .blastinput.dep .libblastinput.a.stamp /bin/rm -f /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastinput.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastinput.dep \ /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastinput-static.a /home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastinput-static.dep gmake[5]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[4]: *** [/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.meta_l:336: all.nonusr] Error 2 gmake[4]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[3]: *** [/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 gmake[3]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' gmake[2]: *** [/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 gmake[2]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' gmake[1]: *** [/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 gmake[1]: Leaving directory '/home/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' gmake: *** [Makefile:24: all] Error 2 *** Error code 2 Stop. bmake[1]: stopped making "all" in /data/jenkins/workspace/pkgsrc-netbsd-trunk-x86_64/biology/ncbi-blast+ *** Error code 1 Stop. bmake: stopped making "all" in /data/jenkins/workspace/pkgsrc-netbsd-trunk-x86_64/biology/ncbi-blast+