+ local run_cmd + run_cmd=run_su + shift + run_su /usr/pkg/bin/bmake stage-install BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/R-Hmisc-4.7.0/work.log + su pbulk -c '"$@"' make /usr/pkg/bin/bmake stage-install BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/R-Hmisc-4.7.0/work.log => Bootstrap dependency digest>=20211023: found digest-20220214 ===> Installing for R-Hmisc-4.8.0 => Generating pre-install file lists => Creating installation directories * installing *source* package 'Hmisc' ... ** package 'Hmisc' successfully unpacked and MD5 sums checked ** using staged installation ** libs cc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -DLDAP_DEPRECATED -fpic -pipe -O2 -fPIC -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -DLDAP_DEPRECATED -c Hmisc.c -o Hmisc.o gfortran -fno-optimize-sibling-calls -fPIC -O -c cidxcn.f -o cidxcn.o gfortran -fno-optimize-sibling-calls -fPIC -O -c cidxcp.f -o cidxcp.o gfortran -fno-optimize-sibling-calls -fPIC -O -c hoeffd.f -o hoeffd.o cc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -DLDAP_DEPRECATED -fpic -pipe -O2 -fPIC -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -DLDAP_DEPRECATED -c init.c -o init.o gfortran -fno-optimize-sibling-calls -fPIC -O -c jacklins.f -o jacklins.o gfortran -fno-optimize-sibling-calls -fPIC -O -c largrec.f -o largrec.o cc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -DLDAP_DEPRECATED -fpic -pipe -O2 -fPIC -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -DLDAP_DEPRECATED -c mChoice.c -o mChoice.o gfortran -fno-optimize-sibling-calls -fPIC -O -c maxempr.f -o maxempr.o cc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -DLDAP_DEPRECATED -fpic -pipe -O2 -fPIC -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -DLDAP_DEPRECATED -c nstr.c -o nstr.o cc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -DLDAP_DEPRECATED -fpic -pipe -O2 -fPIC -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -DLDAP_DEPRECATED -c ranksort.c -o ranksort.o gfortran -fno-optimize-sibling-calls -fPIC -O -c rcorr.f -o rcorr.o cc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -DLDAP_DEPRECATED -fpic -pipe -O2 -fPIC -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -DLDAP_DEPRECATED -c string_box.c -o string_box.o gfortran -fno-optimize-sibling-calls -fPIC -O -c wclosest.f -o wclosest.o cc -shared -Wl,-R/usr/pkg/lib/R/lib -L/usr/pkg/lib/R/lib -Wl,-zrelro -L/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -Wl,-R/usr/pkg/lib -pthread -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -o Hmisc.so Hmisc.o cidxcn.o cidxcp.o hoeffd.o init.o jacklins.o largrec.o mChoice.o maxempr.o nstr.o ranksort.o rcorr.o string_box.o wclosest.o -L/usr/pkg/gcc10/lib/gcc/x86_64--netbsd/10.4.0 -L/usr/pkg/gcc10/lib -Wl,-R/usr/pkg/gcc10//lib/. -Wl,-R/usr/pkg/gcc10/lib/. -lgfortran -lm -lquadmath -lpthread -Wl,-R/usr/pkg/lib/R/lib -L/usr/pkg/lib/R/lib -lR installing to /home/pbulk/build/misc/R-Hmisc/work/.destdir/usr/pkg/lib/R/library/00LOCK-Hmisc/00new/Hmisc/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Hmisc) => Automatic manual page handling => Generating post-install file lists => Checking file-check results for R-Hmisc-4.8.0 => Checking for non-existent script interpreters in R-Hmisc-4.8.0 => Checking file permissions in R-Hmisc-4.8.0 warning: /home/pbulk/build/misc/R-Hmisc/work/.destdir/usr/pkg/lib/R/library/Hmisc/tests/csv/FORMAT.csv: executable bit is set on non-executable file. warning: /home/pbulk/build/misc/R-Hmisc/work/.destdir/usr/pkg/lib/R/library/Hmisc/tests/csv/TEST.csv: executable bit is set on non-executable file. warning: /home/pbulk/build/misc/R-Hmisc/work/.destdir/usr/pkg/lib/R/library/Hmisc/tests/csv/_contents_.csv: executable bit is set on non-executable file. 0 errors and 3 warnings. => Checking for PIE in R-Hmisc-4.8.0 => Checking for RELRO in R-Hmisc-4.8.0 => Checking for missing run-time search paths in R-Hmisc-4.8.0 => Checking for work-directory references in R-Hmisc-4.8.0