+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /usr/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=39 WRKLOG=/tmp/bulklog/py39-scikit-image-0.18.1nb2/work.log
+ su pbulk -c '"$@"' make /usr/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=39 WRKLOG=/tmp/bulklog/py39-scikit-image-0.18.1nb2/work.log
=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Building for py39-scikit-image-0.18.1nb2
(cd /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/ && /usr/bin/env USETOOLS=no PTHREAD_CFLAGS=\ -pthread\  PTHREAD_LDFLAGS=\ -pthread PTHREAD_LIBS= PTHREADBASE=/usr DL_CFLAGS=\ -pthread\  DL_LDFLAGS=\ -pthread DL_LIBS= NPY_BLAS_LIBS=-lblas NPY_LAPACK_LIBS=-llapack\ -lblas NPY_CBLAS_LIBS=-lcblas\ -lblas PYTHON=/usr/pkg/bin/python3.9 CC=cc CFLAGS=-pipe\ -O2\ -fPIC\ -D_FORTIFY_SOURCE=2\ -I/usr/pkg/include\ -I/usr/include\ -I/usr/pkg/include/python3.9 CPPFLAGS=-I/usr/pkg/include/netlib\ -I/usr/pkg/include\ -I/usr/include\ -I/usr/pkg/include/python3.9 CXX=c++ CXXFLAGS=-pipe\ -O2\ -fPIC\ -D_FORTIFY_SOURCE=2\ -I/usr/pkg/include\ -I/usr/include\ -I/usr/pkg/include/python3.9 COMPILER_RPATH_FLAG=-Wl,-R F77=f77 FC=f77 FFLAGS=-O LANG=C LC_ALL=C LC_COLLATE=C LC_CTYPE=C LC_MESSAGES=C LC_MONETARY=C LC_NUMERIC=C LC_TIME=C LDFLAGS=-Wl,-zrelro\ -L/usr/pkg/lib\ -Wl,-R/usr/pkg/lib\ -L/usr/lib\ -Wl,-R/usr/lib LINKER_RPATH_FLAG=-R PATH=/home/pbulk/build/math/py-scikit-image/work/.cwrapper/bin:/home/pbulk/build/math/py-scikit-image/work/.buildlink/bin:/home/pbulk/build/math/py-scikit-image/work/.gcc/bin:/home/pbulk/build/math/py-scikit-image/work/.tools/bin:/usr/pkg/bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/X11R7/bin PREFIX=/usr/pkg MAKELEVEL=0 CONFIG_SITE= PKG_SYSCONFDIR=/usr/pkg/etc HOME=/home/pbulk/build/math/py-scikit-image/work/.home CWRAPPERS_CONFIG_DIR=/home/pbulk/build/math/py-scikit-image/work/.cwrapper/config CPP=cpp LOCALBASE=/usr/pkg X11BASE=/usr/X11R7 PKGMANDIR=man PKGINFODIR=info PKGGNUDIR=gnu/ MAKECONF=/dev/null OBJECT_FMT=ELF USETOOLS=no BSD_INSTALL_PROGRAM=/usr/bin/install\ -c\ -s\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_SCRIPT=/usr/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_LIB=/usr/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_DATA=/usr/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 644 BSD_INSTALL_MAN=/usr/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 644 BSD_INSTALL=/usr/bin/install BSD_INSTALL_PROGRAM_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_SCRIPT_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_LIB_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_DATA_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_MAN_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_GAME=/usr/bin/install\ -c\ -s\ -o\ pbulk\ -g\ pbulk\ -m\ 2555 BSD_INSTALL_GAME_DATA=/usr/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 664 BSD_INSTALL_GAME_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 775 INSTALL_INFO= MAKEINFO=/home/pbulk/build/math/py-scikit-image/work/.tools/bin/makeinfo FLEX= BISON= ITSTOOL=/home/pbulk/build/math/py-scikit-image/work/.tools/bin/itstool GDBUS_CODEGEN=/home/pbulk/build/math/py-scikit-image/work/.tools/bin/gdbus-codegen PKG_CONFIG=/home/pbulk/build/math/py-scikit-image/work/.tools/bin/pkg-config PKG_CONFIG_LIBDIR=/home/pbulk/build/math/py-scikit-image/work/.buildlink/lib/pkgconfig:/home/pbulk/build/math/py-scikit-image/work/.buildlink/share/pkgconfig PKG_CONFIG_LOG=/home/pbulk/build/math/py-scikit-image/work/.pkg-config.log PKG_CONFIG_PATH= CWRAPPERS_CONFIG_DIR=/home/pbulk/build/math/py-scikit-image/work/.cwrapper/config /usr/pkg/bin/python3.9  setup.py  build  -j2)
/home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/setup.py:14: DeprecationWarning: 

  `numpy.distutils` is deprecated since NumPy 1.23.0, as a result
  of the deprecation of `distutils` itself. It will be removed for
  Python >= 3.12. For older Python versions it will remain present.
  It is recommended to use `setuptools < 60.0` for those Python versions.
  For more details, see:
    https://numpy.org/devdocs/reference/distutils_status_migration.html 


  from numpy.distutils.command.build_ext import build_ext
/usr/pkg/lib/python3.9/site-packages/setuptools/config/setupcfg.py:508: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead.
  warnings.warn(msg, warning_class)
/usr/pkg/lib/python3.9/site-packages/setuptools/config/setupcfg.py:508: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead.
  warnings.warn(msg, warning_class)
Partial import of skimage during the build process.
INFO: Disabling color, you really want to install colorlog.
Disabling color, you really want to install colorlog.
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/_shared/geometry.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/_shared/transform.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/_shared/interpolation.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/_shared/fast_exp.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
warning: skimage/_shared/fast_exp.pyx:7:0: Overriding cdef method with def method.
[1/4] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/_shared/fast_exp.pyx
[4/4] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/_shared/transform.pyx
[2/4] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/_shared/geometry.pyx
[3/4] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/_shared/interpolation.pyx
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/draw/_draw.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
[1/1] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/draw/_draw.pyx
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/feature/corner_cy.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/feature/orb_cy.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/feature/brief_cy.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/feature/_texture.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/feature/_hessian_det_appx.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/feature/_hoghistogram.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
[5/6] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/feature/corner_cy.pyx
[1/6] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/feature/_hessian_det_appx.pyx
[2/6] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/feature/_hoghistogram.pyx
[4/6] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/feature/brief_cy.pyx
[3/6] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/feature/_texture.pyx
[6/6] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/feature/orb_cy.pyx
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/feature/_cascade.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/feature/_haar.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
warning: skimage/feature/_cascade.pyx:737:49: Not all members given for struct 'Detection'
warning: skimage/feature/_cascade.pyx:737:49: Not all members given for struct 'Detection'
[2/2] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/feature/_haar.pyx
[1/2] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/feature/_cascade.pyx
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/restoration/_unwrap_1d.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/Cython/Includes/libc/math.pxd.
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/restoration/_denoise_cy.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/restoration/_nl_means_denoising.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
[3/3] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/restoration/_unwrap_1d.pyx
[1/3] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/restoration/_denoise_cy.pyx
[2/3] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/restoration/_nl_means_denoising.pyx
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/restoration/_rolling_ball_cy.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
[1/1] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/restoration/_rolling_ball_cy.pyx
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/filters/rank/core_cy.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/filters/rank/core_cy_3d.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/filters/rank/generic_cy.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/filters/rank/percentile_cy.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/filters/rank/bilateral_cy.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/filters/_multiotsu.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
Compiling /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/filters/_sparse_cy.pyx because it depends on /usr/pkg/lib/python3.9/site-packages/numpy/__init__.pxd.
warning: skimage/filters/rank/core_cy_3d.pyx:47:23: Index should be typed for more efficient access
[Errno 28] No space left on device
Traceback (most recent call last):
  File "/usr/pkg/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1233, in cythonize_one
    result = compile_single(pyx_file, options, full_module_name=full_module_name)
  File "/usr/pkg/lib/python3.9/site-packages/Cython/Compiler/Main.py", line 727, in compile_single
    return run_pipeline(source, options, full_module_name)
  File "/usr/pkg/lib/python3.9/site-packages/Cython/Compiler/Main.py", line 515, in run_pipeline
    err, enddata = Pipeline.run_pipeline(pipeline, source)
[Errno 28] No space left on device
Traceback (most recent call last):
[Errno 28] No space left on device
multiprocessing.pool.RemoteTraceback: 
"""
Traceback (most recent call last):
  File "/usr/pkg/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1233, in cythonize_one
    result = compile_single(pyx_file, options, full_module_name=full_module_name)
  File "/usr/pkg/lib/python3.9/site-packages/Cython/Compiler/Main.py", line 727, in compile_single
    return run_pipeline(source, options, full_module_name)
  File "/usr/pkg/lib/python3.9/site-packages/Cython/Compiler/Main.py", line 515, in run_pipeline
    err, enddata = Pipeline.run_pipeline(pipeline, source)
  File "/usr/pkg/lib/python3.9/site-packages/Cython/Compiler/Pipeline.py", line 355, in run_pipeline
    data = run(phase, data)
  File "/usr/pkg/lib/python3.9/site-packages/Cython/Compiler/Pipeline.py", line 335, in run
    return phase(data)
  File "/usr/pkg/lib/python3.9/site-packages/Cython/Compiler/Pipeline.py", line 52, in generate_pyx_code_stage
    module_node.process_implementation(options, result)
  File "/usr/pkg/lib/python3.9/site-packages/Cython/Compiler/ModuleNode.py", line 143, in process_implementation
    self.generate_c_code(env, options, result)
  File "/usr/pkg/lib/python3.9/site-packages/Cython/Compiler/ModuleNode.py", line 413, in generate_c_code
    rootwriter.copyto(f)
  File "/usr/pkg/lib/python3.9/site-packages/Cython/Compiler/Code.py", line 1756, in copyto
    self.buffer.copyto(f)
  File "/usr/pkg/lib/python3.9/site-packages/Cython/StringIOTree.py", line 66, in copyto
    child.copyto(target)
  File "/usr/pkg/lib/python3.9/site-packages/Cython/StringIOTree.py", line 69, in copyto
    target.write(stream_content)
  File "/usr/pkg/lib/python3.9/codecs.py", line 721, in write
    return self.writer.write(data)
  File "/usr/pkg/lib/python3.9/codecs.py", line 378, in write
    self.stream.write(data)
OSError: [Errno 28] No space left on device

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/pkg/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1274, in cythonize_one_helper
    return cythonize_one(*m)
  File "/usr/pkg/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1241, in cythonize_one
    traceback.print_exc()
  File "/usr/pkg/lib/python3.9/traceback.py", line 163, in print_exc
    print_exception(*sys.exc_info(), limit=limit, file=file, chain=chain)
  File "/usr/pkg/lib/python3.9/traceback.py", line 105, in print_exception
    print(line, file=file, end="")
OSError: [Errno 28] No space left on device

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/pkg/lib/python3.9/multiprocessing/pool.py", line 125, in worker
    result = (True, func(*args, **kwds))
  File "/usr/pkg/lib/python3.9/multiprocessing/pool.py", line 48, in mapstar
    return list(map(*args))
  File "/usr/pkg/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1276, in cythonize_one_helper
    traceback.print_exc()
  File "/usr/pkg/lib/python3.9/traceback.py", line 163, in print_exc
    print_exception(*sys.exc_info(), limit=limit, file=file, chain=chain)
  File "/usr/pkg/lib/python3.9/traceback.py", line 105, in print_exception
    print(line, file=file, end="")
OSError: [Errno 28] No space left on device
"""

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/setup.py", line 211, in <module>
    setup(
  File "/usr/pkg/lib/python3.9/site-packages/numpy/distutils/core.py", line 135, in setup
[3/7] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/filters/rank/bilateral_cy.pyx
[Errno 28] No space left on device
Traceback (most recent call last):
    config = configuration()
  File "/home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/setup.py", line 165, in configuration
[4/7] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/filters/rank/core_cy.pyx
[Errno 28] No space left on device
Traceback (most recent call last):
    config.add_subpackage('skimage')
  File "/usr/pkg/lib/python3.9/site-packages/numpy/distutils/misc_util.py", line 1050, in add_subpackage
    config_list = self.get_subpackage(subpackage_name, subpackage_path,
  File "/usr/pkg/lib/python3.9/site-packages/numpy/distutils/misc_util.py", line 1016, in get_subpackage
[7/7] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/filters/rank/percentile_cy.pyx
[2/7] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/filters/_sparse_cy.pyx
  File "/usr/pkg/lib/python3.9/site-packages/Cython/Compiler/Pipeline.py", line 355, in run_pipeline
    data = run(phase, data)
Traceback (most recent call last):
[1/7] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/filters/_multiotsu.pyx
  File "/usr/pkg/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1233, in cythonize_one
    result = compile_single(pyx_file, options, full_module_name=full_module_name)
Traceback (most recent call last):
[5/7] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/filters/rank/core_cy_3d.pyx
Traceback (most recent call last):
Traceback (most recent call last):
[6/7] Cythonizing /home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/filters/rank/generic_cy.pyx
    config = self._get_configuration_from_setup_py(
  File "/usr/pkg/lib/python3.9/site-packages/numpy/distutils/misc_util.py", line 958, in _get_configuration_from_setup_py
    config = setup_module.configuration(*args)
  File "skimage/setup.py", line 13, in configuration
    config.add_subpackage('filters')
  File "/usr/pkg/lib/python3.9/site-packages/numpy/distutils/misc_util.py", line 1050, in add_subpackage
    config_list = self.get_subpackage(subpackage_name, subpackage_path,
  File "/usr/pkg/lib/python3.9/site-packages/numpy/distutils/misc_util.py", line 1016, in get_subpackage
    config = self._get_configuration_from_setup_py(
  File "/usr/pkg/lib/python3.9/site-packages/numpy/distutils/misc_util.py", line 958, in _get_configuration_from_setup_py
    config = setup_module.configuration(*args)
  File "skimage/filters/setup.py", line 14, in configuration
    cython(['rank/core_cy.pyx',
  File "/home/pbulk/build/math/py-scikit-image/work/scikit-image-0.18.1/skimage/_build.py", line 65, in cython
    cythonize(pyx_files, nthreads=cpu_count(),
  File "/usr/pkg/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1118, in cythonize
    result.get(99999)  # seconds
  File "/usr/pkg/lib/python3.9/multiprocessing/pool.py", line 771, in get
    raise self._value
OSError: [Errno 28] No space left on device
*** Error code 1

Stop.
bmake[1]: stopped in /data/jenkins/workspace/pkgsrc-netbsd-trunk-x86_64/math/py-scikit-image
*** Error code 1

Stop.
bmake: stopped in /data/jenkins/workspace/pkgsrc-netbsd-trunk-x86_64/math/py-scikit-image