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19%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o In static member function 'static void OpenBabel::matrix3x3::jacobi(unsigned int, double*, double*, double*)': cc1plus: warning: iteration 2147483647 invokes undefined behavior [-Waggressive-loop-optimizations] /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/src/math/matrix3x3.cpp:650:19: note: within this loop 650 | for (j = 0; j < static_cast(n)-1; j++) | ~~^~~~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.cpp.o [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/src/stereo/perception.cpp: In function 'void OpenBabel::StereoRefToImplicit(OpenBabel::OBMol&, OpenBabel::OBStereo::Ref)': /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:2973:16: warning: 'template class std::binder1st' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); | ^~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_function.h:1421, from /usr/include/c++/11/bits/stl_tree.h:65, from /usr/include/c++/11/map:60, from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/base.h:26, from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/stereo/stereo.h:27, from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/stereo/tetranonplanar.h:27, from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/stereo/tetrahedral.h:27, from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:26: /usr/include/c++/11/backward/binders.h:108:11: note: declared here 108 | class binder1st | ^~~~~~~~~ /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/src/stereo/perception.cpp: In function 'void OpenBabel::ImplicitRefToStereo(OpenBabel::OBMol&, OpenBabel::OBStereo::Ref, OpenBabel::OBStereo::Ref)': /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:3005:16: warning: 'template class std::binder1st' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); | ^~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_function.h:1421, from /usr/include/c++/11/bits/stl_tree.h:65, from /usr/include/c++/11/map:60, from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/base.h:26, from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/stereo/stereo.h:27, from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/stereo/tetranonplanar.h:27, from /home/pbulk/build/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/stereo/tetrahedral.h:27, from 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src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o [ 40%] Linking CXX shared module ../../lib/adfformat.so [ 40%] Built target adfformat [ 41%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o [ 41%] Linking CXX shared module ../../lib/castepformat.so [ 41%] Built target castepformat [ 41%] Building CXX object src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o [ 41%] Linking CXX shared module ../../lib/crystal09format.so [ 41%] Built target crystal09format [ 41%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o {standard input}: Assembler messages: {standard input}: Fatal error: can't write 70 bytes to section .text of CMakeFiles/daltonformat.dir/daltonformat.cpp.o: 'No space left on device' as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 as: BFD version 2.35.2-54.el9 assertion fail ../../bfd/elf.c:3177 {standard input}: Fatal error: can't close CMakeFiles/daltonformat.dir/daltonformat.cpp.o: No space left on device --- src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o --- *** [src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o] Error code 1 bmake[2]: stopped making "src/formats/CMakeFiles/daltonformat.dir/build" in /home/pbulk/build/biology/openbabel/work/build bmake--- src/formats/CMakeFiles/daltonformat.dir/all --- *** [src/formats/CMakeFiles/daltonformat.dir/all] Error code 2 bmake[1]: stopped making "all" in /home/pbulk/build/biology/openbabel/work/build --- src/formats/CMakeFiles/dmolformat.dir/all --- *** [src/formats/CMakeFiles/dmolformat.dir/all] Error code 6 bmake[1]: stopped making "all" in /home/pbulk/build/biology/openbabel/work/build bmake[1]: 2 errors bmake[1]: stopped making "all" in /home/pbulk/build/biology/openbabel/work/build *** [all] Error code 2 bmake: stopped making "all" in /home/pbulk/build/biology/openbabel/work/build bmake: 1 error bmake: stopped making "all" in /home/pbulk/build/biology/openbabel/work/build *** Error code 2 Stop. bmake[1]: stopped making "all" in /data/jenkins/workspace/pkgsrc-el9-trunk-x86_64/biology/openbabel *** Error code 1 Stop. bmake: stopped making "all" in /data/jenkins/workspace/pkgsrc-el9-trunk-x86_64/biology/openbabel