+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /usr/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=312 WRKLOG=/tmp/bulklog/ncbi-blast+-2.14.1nb6/work.log + su pbulk -c '"$@"' make /usr/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=312 WRKLOG=/tmp/bulklog/ncbi-blast+-2.14.1nb6/work.log => Bootstrap dependency digest>=20211023: found digest-20220214 ===> Building for ncbi-blast+-2.14.1nb6 if test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.flat; then \ cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /bin/make -f Makefile.flat; \ elif test -s ""; then \ cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /bin/make -j2 --jobserver-auth=5,6 all_p; \ else \ cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /bin/make -j2 --jobserver-auth=5,6 all_r; \ fi make[1]: warning: -j2 forced in submake: resetting jobserver mode. make[1]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' Build session ID: fe7ed3cf-1953-483c-b2db-8f17848a21f5 /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ctools/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gui/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/ctools/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT sample/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/gui/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT internal/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sample/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/internal/Makefile /bin/make -C corelib -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT jaeger/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger/Makefile make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /bin/make[4] (Makefile.precompile): Nothing to be done for `all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_pool_balancer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_fast.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_status.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_message.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/guard.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_cookies.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_url.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbierror.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_toolkit.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/perf_log.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_autoinit.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/interprocess_lock.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/resource_info.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_strings.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/expr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_control.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_ctx.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/version.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/syslog.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/stream_utils.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/rwstreambuf.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager_store.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/obj_store.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbitime.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbithr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistre.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbireg.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiobj.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimtx.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimempool.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbifile.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexpt.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexec.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbienv.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidll.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag_p.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidbg.cpp. Updating dependency information for ncbicfg.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiatomic.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiargs.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiapp.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_system.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_stack.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_signal.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_safe_static.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_process.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_param.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_config.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/metareg.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/env_reg.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ddumpable.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/blob_storage.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_os_unix.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/env_reg.cpp -o env_reg.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/metareg.cpp -o metareg.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 ncbicfg.c -o ncbicfg.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:956:33: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] 956 | value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:464:34: note: declared here 464 | NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); | ^~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:2038:66: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] 2038 | CDiagContextThreadData::GetThreadData().GetProperties( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2039 | CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:1096:1: note: declared here 1096 | CDiagContextThreadData::GetProperties(EGetProperties flag) | ^~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'std::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:2101:66: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] 2101 | CDiagContextThreadData::GetThreadData().GetProperties( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2102 | CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:1096:1: note: declared here 1096 | CDiagContextThreadData::GetProperties(EGetProperties flag) | ^~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:2126:66: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] 2126 | CDiagContextThreadData::GetThreadData().GetProperties( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2127 | CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:1096:1: note: declared here 1096 | CDiagContextThreadData::GetProperties(EGetProperties flag) | ^~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:2158:66: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] 2158 | CDiagContextThreadData::GetThreadData().GetProperties( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2159 | CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:1096:1: note: declared here 1096 | CDiagContextThreadData::GetProperties(EGetProperties flag) | ^~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:3755:47: warning: 'virtual bool ncbi::CNcbiApplicationAPI::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] 3755 | app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_param.hpp:41, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbifile.hpp:55, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:41: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiapp_api.hpp:393:34: note: declared here 393 | NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); | ^~~~~~~~~~~~~~~~~~~~~ -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidll.cpp -o ncbidll.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbienv.cpp -o ncbienv.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbifile.cpp -o ncbifile.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbireg.cpp -o ncbireg.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -ptIn file included from /usr/include/string.h:519, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:44, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/tempstr.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:39, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp:35: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'static ncbi::SIZE_TYPE ncbi::NStr::DoubleToString_Ecvt(double, unsigned int, char*, ncbi::SIZE_TYPE, int*, int*)' at /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp:2656:20: /usr/include/bits/string_fortified.h:95:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying between 0 and 15 bytes from a string of length 31 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ hread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp -o ncbistr.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistre.cpp -o ncbistre.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbithr.cpp -o ncbithr.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbitime.cpp -o ncbitime.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/obj_store.cpp -o obj_store.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/stream_utils.cpp -o stream_utils.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/syslog.cpp -o syslog.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/version.cpp -o version.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_ctx.cpp -o request_ctx.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_control.cpp -o request_control.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/expr.cpp -o expr.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/resource_info.cpp -o 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-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/perf_log.cpp -o perf_log.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbierror.cpp -o ncbierror.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/guard.cpp -o guard.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_status.cpp -o request_status.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_fast.cpp -o ncbi_fast.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp -o ncbi_dbsvcmapper.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_pool_balancer.cpp -o ncbi_pool_balancer.o /bin/rm -f libxncbi.a .libxncbi.a.stamp ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o ncbi_fast.o ncbi_dbsvcmapper.o ncbi_pool_balancer.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxncbi.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxncbi.a /bin/ln -f .xncbi.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xncbi.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test_mt.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtest_mt.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtest_mt.a /bin/ln -f .test_mt.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.test_mt.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /bin/make -C test -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test' /bin/make -C jaeger -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger' make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /bin/make -C util -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT diff/Makefile test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT image/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT qparse/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo/Makefile make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -w -j2 --jobserver-auth=9,10 export-headers make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: Nothing to be done for 'export-headers'. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -w -j2 --jobserver-auth=9,10 flag-stamps make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -w -j2 --jobserver-auth=9,10 all make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/crc32_sse.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/cache_async.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/file_manifest.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/stream_source.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/retry_ctx.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/table_printer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/histogram_binning.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_misc.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/rangelist.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/distribution.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/scheduler.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_ctrl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itransaction.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multi_writer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/uttp.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_exception.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/line_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ncbi_cache.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/mutex_pool.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/miscmath.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/transmissionrw.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/static_set.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sgml_entity.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_nonstop.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary_util.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/unicode.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/file_obsolete.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/md5.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ascii85.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/logrotate.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strsearch.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ddump_viewer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_old.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/smalldns.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itree.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strbuffer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bytesrc.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_farmhash.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_cityhash.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/utf8.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/random_gen.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/random_gen.cpp -o random_gen.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/utf8.cpp -o utf8.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum.cpp -o checksum.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_cityhash.cpp -o checksum_cityhash.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_farmhash.cpp -o checksum_farmhash.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bytesrc.cpp -o bytesrc.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strbuffer.cpp -o strbuffer.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itree.cpp -o itree.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/smalldns.cpp -o smalldns.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strsearch.cpp -o strsearch.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/logrotate.cpp -o logrotate.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/bioloIn file included from /usr/include/string.h:519, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:44, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/tempstr.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:39, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/format_guess.hpp:35, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp:33: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'bool ncbi::CFormatGuess::TestFormatNewick(ncbi::CFormatGuess::EMode)' at /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp:1119:24: /usr/include/bits/string_fortified.h:95:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' accessing 12 bytes at offsets 0 and [0, 16397] may overlap up to 12 bytes at offset [0, 11] [-Wrestrict] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ gy/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp -o format_guess.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ascii85.cpp -o ascii85.o 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-I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sgml_entity.cpp -o sgml_entity.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/static_set.cpp -o static_set.o 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/home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/line_reader.cpp -o line_reader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_exception.cpp -o util_exception.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/uttp.cpp -o uttp.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multi_writer.cpp -o multi_writer.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itransaction.cpp -o itransaction.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool.cpp -o thread_pool.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/scheduler.cpp -o scheduler.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/distribution.cpp -o distribution.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/rangelist.cpp -o rangelist.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_misc.cpp -o util_misc.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/histogram_binning.cpp -o histogram_binning.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/table_printer.cpp -o table_printer.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/retry_ctx.cpp -o retry_ctx.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/stream_source.cpp -o stream_source.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/file_manifest.cpp -o file_manifest.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/cache_async.cpp -o cache_async.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multipattern_search.cpp -o multipattern_search.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/crc32_sse.cpp -o crc32_sse.o /bin/rm -f libxutil.a .libxutil.a.stamp ar cr libxutil.a random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o crc32_sse.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxutil.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxutil.a /bin/ln -f .xutil.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xutil.dep make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /bin/make -C regexp -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/regexp TMPL=regexp -w -j2 --jobserver-auth=13,14 mark-as-disabled make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' /bin/make -C xregexp -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/mask_regexp.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/arg_regexp.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/usr/pkg/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/usr/pkg/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/usr/pkg/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/usr/pkg/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp -o convert_dates_iso8601.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o convert_dates_iso8601.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxregexp.a /bin/ln -f .xregexp.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xregexp.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp_template_tester.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /bin/make -C compress -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -C bzip2 -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress' make[4]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -w -j2 --jobserver-auth=15,16 mark-as-disabled make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /bin/make -C zlib -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress' make[4]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project zlib due to unmet requirements: LocalZ make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/zlib TMPL=zlib -w -j2 --jobserver-auth=15,16 mark-as-disabled make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' /bin/make -C api -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_zip.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zstd.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/lzo.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/compress.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/compress.cpp -o compress.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream.cpp -o stream.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zstd.cpp -o zstd.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/tar.cpp -o tar.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive.cpp -o archive.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o lzo.o zlib.o zstd.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcompress.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress' /bin/make -C diff -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff' /bin/make -C image -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image' /bin/make -C tables -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test/Makefile make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/raw_scoremat.c. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.tables.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /bin/make -C test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /bin/make -C sequtil -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_shared.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_manip.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.sequtil.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /bin/make -C bitset -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile /bin/make -C test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test' /bin/make -C demo -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset' /bin/make -C qparse -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse' /bin/make -C lmdb -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LocalLMDB.enabled', needed by 'requirements'. Stop. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' /bin/make -C lmdbxx -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx/example.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/lmdbxx -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=lmdbxx_sample -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx/example.cpp -o example.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 example.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxncbi -llmdb -lpthread -lm -lpthread -o lmdbxx_sample strip lmdbxx_sample /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdbxx_sample /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f lmdbxx_sample /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/lmdbxx_sample make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' /bin/make -C test -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test' /bin/make -C demo -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo' /bin/make -C profile -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile/rtprofile.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile/rtprofile.cpp -o rtprofile.o /bin/rm -f libutrtprof.a .libutrtprof.a.stamp ar cr libutrtprof.a rtprofile.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libutrtprof.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libutrtprof.a /bin/ln -f .utrtprof.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.utrtprof.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /bin/make -C connect -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test/Makefile make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p mbedtls Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_tls13_keys.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_tls.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_ticket.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_srv.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_msg.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cookie.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cli.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cache.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/net_sockets.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/debug.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509write_csr.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509write_crt.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_csr.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_crt.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_crl.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_create.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs11.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/certs.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/xtea.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/version_features.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mbedtls_version.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/timing.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/threading.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/sha512.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/sha256.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/sha1.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/rsa_internal.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/rsa.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ripemd160.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_its_file.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_storage.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_slot_management.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_se.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_rsa.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_mac.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_hash.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_ecp.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_driver_wrappers.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_client.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_cipher.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_aead.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/poly1305.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/platform_util.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/platform.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkwrite.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkparse.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs5.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs12.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pk_wrap.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pk.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pem.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/padlock.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/oid.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/nist_kw.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mps_trace.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mps_reader.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mbedtls_md5.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md4.c. 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Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_gnutls.c. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_tls.c -o ncbi_tls.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aes.c -o mbedtls/aes.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aesni.c -o mbedtls/aesni.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/arc4.c -o mbedtls/arc4.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aria.c -o mbedtls/aria.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1parse.c -o mbedtls/asn1parse.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1write.c -o mbedtls/asn1write.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe 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-I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/bignum.c -o mbedtls/bignum.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkwrite.c -o mbedtls/pkwrite.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/platform.c -o mbedtls/platform.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/platform_util.c -o mbedtls/platform_util.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/poly1305.c -o mbedtls/poly1305.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto.c -o mbedtls/psa_crypto.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_aead.c -o mbedtls/psa_crypto_aead.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_cipher.c -o mbedtls/psa_crypto_cipher.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread 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-I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_driver_wrappers.c -o mbedtls/psa_crypto_driver_wrappers.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG 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-D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_hash.c -o mbedtls/psa_crypto_hash.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_mac.c -o mbedtls/psa_crypto_mac.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc 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/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_slot_management.c -o mbedtls/psa_crypto_slot_management.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_storage.c -o mbedtls/psa_crypto_storage.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_its_file.c -o mbedtls/psa_its_file.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall 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-I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/rsa.c -o mbedtls/rsa.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/rsa_internal.c -o mbedtls/rsa_internal.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE 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/home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/timing.c -o mbedtls/timing.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mbedtls_version.c -o mbedtls/mbedtls_version.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC 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-O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_crt.c -o mbedtls/x509_crt.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509_csr.c -o mbedtls/x509_csr.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509write_crt.c -o mbedtls/x509write_crt.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509write_csr.c -o mbedtls/x509write_csr.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/debug.c -o mbedtls/debug.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/net_sockets.c -o mbedtls/net_sockets.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cache.c -o mbedtls/ssl_cache.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c -o mbedtls/ssl_ciphersuites.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cli.c -o mbedtls/ssl_cli.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cookie.c -o mbedtls/ssl_cookie.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_msg.c -o mbedtls/ssl_msg.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_srv.c -o mbedtls/ssl_srv.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_ticket.c -o mbedtls/ssl_ticket.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_tls.c -o mbedtls/ssl_tls.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_tls13_keys.c -o mbedtls/ssl_tls13_keys.o /bin/rm -f libconnssl.a .libconnssl.a.stamp ar cr libconnssl.a ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnssl.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnssl.a /bin/ln -f .connssl.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connssl.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namerd.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_linkerd.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_dispd.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_local.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_iprange.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_version.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_connector.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_memory_connector.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_file_connector.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_connector.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lb.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_base64.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_sendmail.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_host_info.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_server_info.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ipv6.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connutil.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connection.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connector.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_buffer.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_util.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_priv.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_types.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ansi_ext.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm.c. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm.c -o ncbi_lbsm.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c -o ncbi_lbsm_ipc.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_types.c -o ncbi_types.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core.c -o ncbi_core.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_util.c -o ncbi_util.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/n/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c: In function 's_HEAP_Take': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c:636:12: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] 636 | return &b->head; | ^~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Walk': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c:1229:12: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] 1229 | return &s_HEAP_Walk(heap, ptr)->head; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Next': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c:1242:65: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] 1242 | for (n = s_HEAP_Walk(heap, ptr); n; n = s_HEAP_Walk(heap, &n->head)) { | ^~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c:1246:12: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] 1246 | return &n->head; | ^~~~~~~~ cbi_host_info.c -o ncbi_host_info.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/b/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPXfer': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c:963:11: warning: array subscript -1 is outside array bounds of 'char[128]' [-Warray-bounds] 963 | q = c > buf ? c[-1] : '\0'; | ~~^~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c:950:10: note: while referencing 'buf' 950 | char buf[128]; | ^~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c: In function 's_GetNextInfo': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:696:51: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] 696 | || SERV_EqualInfo(skip, &svc->info))) { | ^~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:699:45: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] 699 | } else if (SERV_EqualInfo(skip, &svc->info)) | ^~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:850:31: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] 850 | cand[n].cand.info = &svc->info; | ^~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:938:37: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] 938 | if ((info = SERV_CopyInfoEx(&svc->info, name)) != 0) { | ^~~~~~~~~~ iology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_version.c -o ncbi_version.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_local.c -o ncbi_local.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c -o ncbi_lbsmd.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-srcIn file included from /usr/include/string.h:519, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:32: In function 'strncpy', inlined from 'parson_strndup' at /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:135:5, inlined from 'parson_strdup' at /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:140:12, inlined from 'x_json_object_add' at /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:318:28: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c: In function 'x_json_object_add': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:140:12: note: length computed here 140 | return parson_strndup(string, strlen(string)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:32: In function 'strncpy', inlined from 'parson_strndup' at /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:135:5, inlined from 'x_json_value_init_string' at /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:1122:12: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c: In function 'x_json_value_init_string': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:1119:18: note: length computed here 1119 | string_len = strlen(string); | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:32: In function 'strncpy', inlined from 'parson_strndup' at /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:135:5, inlined from 'parson_strdup' at /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:140:12, inlined from 'x_json_parse_string_with_comments' at /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:913:27: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c: In function 'x_json_parse_string_with_comments': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:140:12: note: length computed here 140 | return parson_strndup(string, strlen(string)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:32: In function 'strncpy', inlined from 'parson_strndup' at /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:135:5, inlined from 'parson_strdup' at /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:140:12, inlined from 'x_json_value_deep_copy' at /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:1213:32: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c: In function 'x_json_value_deep_copy': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c:140:12: note: length computed here 140 | return parson_strndup(string, strlen(string)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_linkerd.c -o ncbi_linkerd.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c -o parson.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip.c -o ncbi_localip.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c -o ncbi_lbdns.o /bin/rm -f libconnect.a .libconnect.a.stamp ar cr libconnect.a ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_lbsmd.o ncbi_dispd.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnect.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnect.a /bin/ln -f .connect.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connect.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_usage_report.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_blowfish.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip_cxx.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_cxx.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_monkey.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_userhost.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe_connector.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_misc.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_test.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_stream.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/email_diag_handler.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core_cxx.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_cxx.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip_cxx.cpp -o ncbi_localip_cxx.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_blowfish.c -o ncbi_blowfish.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_usage_report.cpp -o ncbi_usage_report.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp -o connect_misc.o /bin/rm -f libxxconnect.a .libxxconnect.a.stamp ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xxconnect.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_lbsmd.o ncbi_dispd.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnect.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnect.a /bin/ln -f .xconnect.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnect.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:47:54: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] 47 | CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING | ^ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:33: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here 77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer | ^~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:52:22: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] 52 | CThreadedServer& m_Server; // NCBI_FAKE_WARNING | ^~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:33: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here 77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server_monitor.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connection_pool.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server.cpp -o server.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xthrserv.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/make -C services -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test/Makefile make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/util.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_search.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_globals.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_globals.cpp -o grid_globals.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp -o grid_rw_impl.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/remote_app.cpp -o remote_app.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp -o srv_connections.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT 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-D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/clparser.cpp -o clparser.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage.cpp -o netstorage.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnserv.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp /bin/rm -f libncbi_xcache_netcache-dll.so .libncbi_xcache_netcache-dll.so.stamp ar cr libncbi_xcache_netcache.a neticache_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -shared -o libncbi_xcache_netcache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 -fPIC neticache_client.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm -lpthread /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a /bin/ln -f .ncbi_xcache_netcache.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.so /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache-dll.so /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.so /bin/ln -f .ncbi_xcache_netcache-dll.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/blob_storage_netcache.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xblobstorage_netcache.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /bin/make -C test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /bin/make -C ext -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test/Makefile make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_localnet.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_crypt.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_ifconf.c. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_ifconf.c -o ncbi_ifconf.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_crypt.c -o ncbi_crypt.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb.c -o ncbi_dblb.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_localnet.c -o ncbi_localnet.o /bin/rm -f libconnext.a .libconnext.a.stamp ar cr libconnext.a ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_localnet.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnext.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnext.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnext.a /bin/ln -f .connext.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connext.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp: In member function 'virtual void ncbi::CDBLB_ServiceMapper::GetServerOptions(const string&, ncbi::IDBServiceMapper::TOptions*)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp:336:33: warning: taking address of packed member of 'SLBSM_HostLoad' may result in an unaligned pointer value [-Waddress-of-packed-member] 336 | HINFO_Status(hinfo, &load.status); | ^~~~~~~~~~~~ make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp -o ncbi_dblb_svcmapper.o /bin/rm -f libxconnext.a .libxconnext.a.stamp ar cr libxconnext.a ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_localnet.o ncbi_dblb_svcmapper.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnext.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnext.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnext.a /bin/ln -f .xconnext.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnext.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /bin/make -C test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /bin/make -C test -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test' make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/make -C cgi -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test/Makefile make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/user_agent.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_entry_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp_cached.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_exception.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_session.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_serial.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_util.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_run.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ref_args.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbires.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgir.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgictx.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgi.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcgi.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcgi.a /bin/ln -f .xcgi.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcgi.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/fcgi_run.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_XFCGI_EXPORTS -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxfcgi.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xfcgi.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /bin/make -C test -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test' make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /bin/make -C html -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test/Makefile make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -w -j2 --jobserver-auth=9,10 export-headers make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' make[3]: Nothing to be done for 'export-headers'. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -w -j2 --jobserver-auth=9,10 flag-stamps make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -w -j2 --jobserver-auth=9,10 all make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/writer_htmlenc.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html_exception.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/indentstream.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/commentdiag.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/components.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/selection.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/pager.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/page.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/htmlhelper.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/node.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/node.cpp -o node.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html.cpp -o html.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/page.cpp -o page.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/pager.cpp -o pager.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/selection.cpp -o selection.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/components.cpp -o components.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/indentstream.cpp -o indentstream.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html_exception.cpp -o html_exception.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxhtml.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxhtml.a /bin/ln -f .xhtml.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xhtml.dep make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /bin/make -C test -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test' /bin/make -C demo -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo' make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /bin/make -C build-system -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -C helpers -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' /bin/make[3] (Makefile.run_with_lock.app): Nothing to be done for `flag-stamps'. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' /bin/make[3] (Makefile.run_with_lock.app): Nothing to be done for `all'. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' /bin/make -C project_tree_builder -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o 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/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/usr/pkg/lib -lpcre -lm -lpthread -o project_tree_builder strip project_tree_builder /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/project_tree_builder make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /bin/make -C msbuild -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' make[4]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project msbuild due to unmet requirements: MSWin make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w -j2 --jobserver-auth=15,16 mark-as-disabled make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system' /bin/make -C serial -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT soap/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test/Makefile make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/rpcbase.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pathhook.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialobject.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serializable.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrjson.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrjson.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrxml.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrxml.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasnb.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasnb.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasn.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasn.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objstack.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objlist.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objhook.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/exception.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pack_string.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/delaybuf.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serial.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/iterator.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objcopy.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/aliasinfo.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choiceptr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choice.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/variant.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfo.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/member.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfob.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/memberlist.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/memberid.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stltypes.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/continfo.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/autoptrinfo.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/ptrinfo.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/enumerated.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typemap.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeref.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectio.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectiter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectinfo.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeinfo.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdatakey.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdata.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdata.cpp -o hookdata.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectiter.cpp -o objectiter.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectio.cpp -o objectio.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeref.cpp -o typeref.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typemap.cpp -o typemap.o /home/pbulk/build/biolo/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp: In static member function 'static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = long double]': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:23: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized] 147 | in.SkipStd(data); | ~~~~~~~~~~^~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:23: note: by argument 2 of type 'const long double&' to 'void (ncbi::CObjectIStream::)(const long double&)' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:146:25: note: 'data' declared here 146 | TObjectType data; | ^~~~ gy/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp -o stdtypes.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/enumerated.cpp -o enumerated.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/continfo.cpp -o continfo.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stltypes.cpp -o stltypes.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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-D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrxml.cpp -o objostrxml.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrxml.cpp -o objistrxml.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrjson.cpp -o objostrjson.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrjson.cpp -o objistrjson.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serializable.cpp -o serializable.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialobject.cpp -o serialobject.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pathhook.cpp -o pathhook.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xser.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialasn.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/asntypes.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/asntypes.cpp -o asntypes.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcser.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcser.a /bin/ln -f .xcser.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcser.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /bin/make -C datatool -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool TMPL=datatool -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool TMPL=datatool -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_node.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_merger.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdparser.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdlexer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdlstr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdlparser.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdllexer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdparser.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdlexer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/aliasstr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/rpcgen.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdparser.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdlexer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/dtdaux.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/srcutil.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/comments.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/exceptions.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/lexer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/parser.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/aparser.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/alexer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/fileutil.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/code.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/filecode.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/generate.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/moduleset.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/module.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/mcontainer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/value.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choiceptrstr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choicestr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/stlstr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/classstr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/enumstr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/stdstr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/ptrstr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/typestr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/choicetype.cpp. Updating dependency information for 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/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/datatool.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread 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-D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/namespace.cpp -o namespace.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include 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/home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/reftype.cpp -o reftype.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/unitype.cpp -o unitype.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool 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/home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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-I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdlexer.cpp -o jsdlexer.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdparser.cpp -o jsdparser.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool strip datatool /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f datatool /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' /bin/make -C test -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test' /bin/make -C soap -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap' /bin/make -C grpc_integration -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration/grpc_integration.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration/grpc_integration.cpp -o grpc_integration.o /bin/rm -f libgrpc_integration.a .libgrpc_integration.a.stamp ar cr libgrpc_integration.a grpc_integration.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgrpc_integration.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgrpc_integration.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgrpc_integration.a /bin/ln -f .grpc_integration.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.grpc_integration.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /bin/make -C db -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT bdb/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb/Makefile /bin/make -C sqlite -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o /bin/rm -f libsqlitewrapp.a .libsqlitewrapp.a.stamp ar cr libsqlitewrapp.a sqlitewrapp.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsqlitewrapp.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsqlitewrapp.a /bin/ln -f .sqlitewrapp.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.sqlitewrapp.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /bin/make -C bdb -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb' make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db' /bin/make -C dbapi -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in` /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT simple/Makefile test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lang_bind/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test/Makefile make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -w -j2 --jobserver-auth=9,10 export-headers make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' make[3]: Nothing to be done for 'export-headers'. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -w -j2 --jobserver-auth=9,10 flag-stamps make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -w -j2 --jobserver-auth=9,10 all make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/variant.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/variant.cpp -o variant.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__R/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:117:26: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] 117 | return GetBlobOStream(blob_size, | ~~~~~~~~~~~~~~^~~~~~~~~~~ 118 | (log_it == eDisableLog) ? fBOS_SkipLogging : 0, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 | buf_size); | ~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:35: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:269:27: note: declared here 269 | virtual CNcbiOstream& GetBlobOStream(size_t blob_size, | ^~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:125:26: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] 125 | return GetBlobOStream(conn, blob_size, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 126 | (log_it == eDisableLog) ? fBOS_SkipLogging : 0, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | buf_size); | ~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:35: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:294:27: note: declared here 294 | virtual CNcbiOstream& GetBlobOStream(IConnection *conn, | ^~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:155:26: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] 155 | return GetBlobOStream(col, blob_size, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 156 | (log_it == eDisableLog) ? fBOS_SkipLogging : 0, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 | buf_size); | ~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:35: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here 596 | virtual CNcbiOstream& GetBlobOStream(unsigned int col, | ^~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:163:25: warning: 'virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::TBlobOStreamFlags)' is deprecated [-Wdeprecated-declarations] 163 | return GetBlobWriter(col, blob_size, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 164 | (log_it == eDisableLog) ? fBOS_SkipLogging : 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp:35: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:621:22: note: declared here 621 | virtual IWriter* GetBlobWriter(unsigned int col, | ^~~~~~~~~~~~~ UNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o /home/pbulk/build/biology/n/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'void ncbi::CResultSet::x_CacheItems(int)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:261:58: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::CDB_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations] 261 | var.SetBlobDescriptor(m_rs->GetBlobDescriptor()); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver_mgr.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:40, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:37: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:542:31: note: declared here 542 | virtual I_BlobDescriptor* GetBlobDescriptor(); | ^~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:329:38: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] 329 | return IResultSet::GetBlobOStream(blob_size, log_it, buf_size); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:37: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:274:27: note: declared here 274 | virtual CNcbiOstream& GetBlobOStream(size_t blob_size, | ^~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp: At global scope: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:330:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] 330 | } | ^ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:325:15: note: declared here 325 | CNcbiOstream& CResultSet::GetBlobOStream(size_t blob_size, | ^~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:337:38: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] 337 | return IResultSet::GetBlobOStream(conn, blob_size, log_it, buf_size); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:37: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:300:27: note: declared here 300 | virtual CNcbiOstream& GetBlobOStream(IConnection *conn, | ^~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp: At global scope: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:338:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] 338 | } | ^ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:332:15: note: declared here 332 | CNcbiOstream& CResultSet::GetBlobOStream(IConnection *conn, | ^~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:355:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] 355 | } | ^ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:348:15: note: declared here 348 | CNcbiOstream& CResultSet::GetBlobOStream(size_t blob_size, | ^~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:365:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] 365 | } | ^ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:357:15: note: declared here 357 | CNcbiOstream& CResultSet::GetBlobOStream(IConnection *conn, | ^~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'ncbi::CNcbiOstream& ncbi::CResultSet::xGetBlobOStream(ncbi::CDB_Connection*, size_t, ncbi::TBlobOStreamFlags, size_t, bool)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:384:62: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::CDB_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations] 384 | unique_ptr desc(m_rs->GetBlobDescriptor()); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver_mgr.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:40, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:37: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:542:31: note: declared here 542 | virtual I_BlobDescriptor* GetBlobDescriptor(); | ^~~~~~~~~~~~~~~~~ cbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUN/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp: In constructor 'ncbi::CBlobOStream::CBlobOStream(ncbi::CDB_CursorCmd*, unsigned int, size_t, std::streamsize, ncbi::TBlobOStreamFlags, ncbi::CDB_Connection*)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp:85:37: warning: 'virtual ncbi::CDB_SendDataCmd* ncbi::CDB_CursorCmd::SendDataCmd(unsigned int, size_t, bool, bool)' is deprecated [-Wdeprecated-declarations] 85 | ->SetCmd(curCmd->SendDataCmd(item_num, datasize, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 86 | (flags & fBOS_SkipLogging) == 0)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver_mgr.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:40, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.hpp:36, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.hpp:36, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp:34: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:891:30: note: declared here 891 | virtual CDB_SendDataCmd* SendDataCmd(unsigned int item_num, size_t size, | ^~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:122:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] 122 | } | ^ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:106:15: note: declared here 106 | CNcbiOstream& CCursor::GetBlobOStream(unsigned int col, | ^~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:129:35: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] 129 | return ICursor::GetBlobOStream(col, blob_size, log_it, buf_size); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:35: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:602:27: note: declared here 602 | virtual CNcbiOstream& GetBlobOStream(unsigned int col, | ^~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp: At global scope: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:130:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] 130 | } | ^ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:124:15: note: declared here 124 | CNcbiOstream& CCursor::GetBlobOStream(unsigned int col, | ^~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:145:1: warning: 'virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::TBlobOStreamFlags)' is deprecated [-Wdeprecated-declarations] 145 | } | ^ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:132:10: note: declared here 132 | IWriter* CCursor::GetBlobWriter(unsigned int col, | ^~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp: In member function 'virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:151:34: warning: 'virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)' is deprecated [-Wdeprecated-declarations] 151 | return ICursor::GetBlobWriter(col, blob_size, log_it); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:35: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:626:22: note: declared here 626 | virtual IWriter* GetBlobWriter(unsigned int col, | ^~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp: At global scope: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:152:1: warning: 'virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)' is deprecated [-Wdeprecated-declarations] 152 | } | ^ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp:147:10: note: declared here 147 | IWriter* CCursor::GetBlobWriter(unsigned int col, | ^~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp: In constructor 'ncbi::CxBlobWriter::CxBlobWriter(ncbi::CDB_CursorCmd*, unsigned int, size_t, ncbi::TBlobOStreamFlags)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp:88:36: warning: 'virtual ncbi::CDB_SendDataCmd* ncbi::CDB_CursorCmd::SendDataCmd(unsigned int, size_t, bool, bool)' is deprecated [-Wdeprecated-declarations] 88 | m_dataCmd = curCmd->SendDataCmd(item_num, datasize, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 89 | (flags & fBOS_SkipLogging) == 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver_mgr.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/dbapi.hpp:40, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp:35: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:891:30: note: declared here 891 | virtual CDB_SendDataCmd* SendDataCmd(unsigned int item_num, size_t size, | ^~~~~~~~~~~ ETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi.dep make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /bin/make -C driver -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT util/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ctlib/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ftds100/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ftds-default/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT mysql/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT samples/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/handle_stack.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbu/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp: In member function 'bool ncbi::I_CursorCmd::UpdateTextImage(unsigned int, ncbi::CDB_Stream&, bool)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp:248:22: warning: 'virtual bool ncbi::I_CursorCmd::UpdateBlob(unsigned int, ncbi::CDB_Stream&, bool)' is deprecated [-Wdeprecated-declarations] 248 | return UpdateBlob(item_num, data, log_it); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:36, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp:34: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/interfaces.hpp:561:18: note: declared here 561 | virtual bool UpdateBlob(unsigned int item_num, CDB_Stream& data, | ^~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp: In member function 'ncbi::I_BlobDescriptor* ncbi::I_Result::GetImageOrTextDescriptor()': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp:276:29: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::I_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations] 276 | return GetBlobDescriptor(); | ~~~~~~~~~~~~~~~~~^~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:36, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp:34: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/interfaces.hpp:769:31: note: declared here 769 | virtual I_BlobDescriptor* GetBlobDescriptor(void) = 0; | ^~~~~~~~~~~~~~~~~ lk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/numeric_convert.cpp -o numeric_convert.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/parameters.cpp -o parameters.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/exception.cpp -o exception.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp -o interfaces.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/public.cpp -o public.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/types.cpp -o types.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/memory_store.cpp -o memory_store.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/pointer_pot.cpp -o pointer_pot.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/driver_mgr.cpp -o driver_mgr.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp -o dbapi_driver_conn_mgr.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp -o dbapi_conn_factory.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp -o dbapi_svc_mapper.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp -o dbapi_driver_utils.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp -o dbapi_impl_cmd.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp -o dbapi_impl_connection.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp -o dbapi_impl_context.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp -o dbapi_impl_result.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp -o dbapi_driver_conn_params.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp -o dbapi_driver_exception_storage.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp /bin/rm -f libdbapi_driver-dll.so .libdbapi_driver-dll.so.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -shared -o libdbapi_driver-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 -fPIC handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lm -lpthread /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.a /bin/ln -f .dbapi_driver.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.so /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver-dll.so /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.so /bin/ln -f .dbapi_driver-dll.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /bin/make -C util -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util' /bin/make -C ctlib -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /bin/make -C ftds100 -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' /bin/make -C ftds-default -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /bin/make -C mysql -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /bin/make -C odbc -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project odbc due to unmet requirements: ODBC make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -w -j2 --jobserver-auth=15,16 mark-as-disabled make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/make -C samples -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /bin/make -C simple -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple' /bin/make -C lang_bind -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' /bin/make -C test -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test' make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /bin/make -C objects -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/Makefile.sources builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/bin/make -w -j2 --jobserver-auth=14,16"; export MAKE; \ ( cd $i && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-w -j2 --jobserver-auth=14,16" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \ -oc omssa -or objects/omssa -odi -od omssa.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m access.asn -M "" -oA \ -oc access -or objects/access -odi -od access.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd access.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/generamake[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. l/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ -oc blast -or objects/blast -odi -od blast.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbmake[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. ulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' File blastxml.module not found. Using defaults... /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blastxml.asn -M "" -oA \ -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blastxml2.asn -M "" -oA \ -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biolmake[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. ogy/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA \ -oc cdd -or objects/cdd -odi -od cdd.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA \ -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump \ datatool: 2.23.2 make[5]: Leaving directory '/homake[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. me/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m docsum.asn -M "" -oA \ -oc docsum -or objects/docsum -odi -od docsum.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA \ -oc biotree -or objects/biotree -odi -od biotree.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m entrez2.asn -M "" -oA \ -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/womake[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. rk/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA \ -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m featdef.asn -M "" -oA \ -oc featdef -or objects/featdef -odi -od featdef.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. src/objects/gbseq' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m gbseq.asn -M "" -oA \ -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m general.asn -M "" -oA \ -oc general -or objects/general -odi -od general.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplimake[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. t/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m insdseq.asn -M "" -oA \ -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m macro.asn -M "" -oA \ -oc macro -or objects/macro -odi -od macro.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/bimake[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. ology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medline -or objects/medline -odi -od medline.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mim.asn -M "" -oA \ -oc mim -or objects/mim -odi -od mim.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbimake[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. -blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ -oc mla -or objects/mla -odi -od mla.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objecmake[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. ts/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA \ -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' /bin/make -w -j2 --jobserver-aumake[5]: warning: -j2 forced in submake: resetting jobserver mode. th=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA \ -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Emake[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. ntering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m objprt.asn -M "" -oA \ -oc objprt -or objects/objprt -odi -od objprt.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA \ -oc proj -or objects/proj -odi -od proj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blastmake[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. -2.14.1+-src/c++/src/objects/pub' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pub -or objects/pub -odi -od pub.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objecmake[5]: warning: -j2 forced in submake: resetting jobserver mode. ts/scoremat' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock/seqblock.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ -oc seq -or objects/seq -odi -od seq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqcode.asn -M "" -oA \ -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex ''make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. \ -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqloc -or objects/make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. seqloc -odi -od seqloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medlinmake[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. e/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asmake[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. n objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ -oc submit -or objects/submit -odi -od submit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatmake[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. ool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m tinyseq.asn -M "" -oA \ -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA \ -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blasmake[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. t-2.14.1+-src/c++/src/objects/pcassay' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc remap -or objects/remap -odi -od remap.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA \ -oc homologene -or objects/homologene -odi -od homologene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build/biology/ncbi-blast+/work/nmake[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. cbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. Warning: (810.1) No service name provided for CTrackMgrClient 2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA \ -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pmake[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: warning: -j2 forced in submake: resetting jobserver mode. bulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA \ -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m valerr.asn -M "" -oA \ -oc valerr -or objects/valerr -odi -od valerr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m valid.asn -M "" -oA \ -oc valid -or objects/valid -odi -od valid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1make[5]: warning: -j2 forced in submake: resetting jobserver mode. +-src/c++/src/objects/valid' /bin/make -w -j2 --jobserver-auth=14,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m genesbyloc.asn -M "" -oA \ -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' /bin/make -C general -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in` /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh general all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/uoconv.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general__.cpp -o general__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general___.cpp -o general___.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgeneral.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgeneral.a /bin/ln -f .general.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.general.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /bin/make -C test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test' /bin/make -C unit_test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /bin/make -C biblio -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh biblio all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/citation_base.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiblio.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libbiblio.a /bin/ln -f .biblio.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.biblio.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /bin/make -C medline -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh medline all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedline.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmedline.a /bin/ln -f .medline.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.medline.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /bin/make -C pub -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pub all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub__.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub___.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpub.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpub.a /bin/ln -f .pub.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pub.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /bin/make -C seqcode -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqcode all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqcode.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqcode.a /bin/ln -f .seqcode.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqcode.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /bin/make -C seq -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test/Makefile make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/Makefile.sources builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/bin/make -w -j2 --jobserver-auth=16,18"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../$x ; \ (cd $d && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /bin/make -w -j2 --jobserver-auth=16,18 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' /bin/make -w -j2 --jobserver-auth=16,18 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' /bin/make -w -j2 --jobserver-auth=16,18 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc obmake[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: warning: -j2 forced in submake: resetting jobserver mode. jects/seq/seq' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' /bin/make -w -j2 --jobserver-auth=16,18 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' /bin/make -w -j2 --jobserver-auth=16,18 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src make[6]: Entering directory '/home/pbulk/build/biology/nmake[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: warning: -j2 forced in submake: resetting jobserver mode. cbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' /bin/make -w -j2 --jobserver-auth=16,18 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seq all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock/seqblock.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/so_map.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqloc___.cpp. Updating dependency information for seqfeat___.cpp. Updating dependency information for seqblock___.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqalign__.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq__.cpp -o seq__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:3, from seqalign__.cpp:1: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp: In member function 'ncbi::objects::CDense_seg_Base::TDim ncbi::objects::CDense_seg::CheckNumRows() const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:92:13: warning: comparison of integer expressions of different signedness: 'const TDim' {aka 'const int'} and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 92 | if (dim != GetIds().size()) { | ~~~~^~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp: In member function 'ncbi::objects::CDense_seg_Base::TNumseg ncbi::objects::CDense_seg::CheckNumSegs() const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:117:21: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'const TDim' {aka 'const int'} [-Wsign-compare] 117 | if (lens.size() != numsegs) { | ~~~~~~~~~~~~^~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:127:42: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'const TDim' {aka 'const int'} [-Wsign-compare] 127 | if (widths.size() && widths.size() != numrows) { | ~~~~~~~~~~~~~~^~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp: In member function 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:1018:28: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'ncbi::objects::CDense_seg_Base::TDim' {aka 'int'} [-Wsign-compare] 1018 | row_i < numrows; ++row_i, ++tmp_idx) { | ~~~~~~^~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp: In member function 'ncbi::CRef ncbi::objects::CDense_seg::FillUnaligned() const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:1214:32: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CDense_seg_Base::TNumseg' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1214 | for ( ; extra_seg < extra_segs.size() && extra_segs[extra_seg] == seg; ++new_seg, ++extra_seg) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1382:41: warning: 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] 1382 | SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:3, from seqalign__.cpp:1: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:901:6: note: declared here 901 | void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, | ^~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1386:34: warning: 'void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] 1386 | (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:42, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here 79 | NCBI_DEPRECATED void RemapToLoc(TDim row, | ^~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1391:40: warning: 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] 1391 | (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1365:6: note: declared here 1365 | void CSeq_align::RemapToLoc(TDim row, | ^~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp: In function 'ncbi::TSeqPos ncbi::objects::s_GetAlignmentLength(const ncbi::objects::CSeq_align&, const ncbi::CRangeCollection&, bool)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1893:52: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CDense_seg_Base::TNumseg' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1893 | for (CDense_seg::TNumseg i = 0; i < ds.GetLens().size(); | ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42, from seqfeat__.cpp:1: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function 'ncbi::CTempString ncbi::objects::s_AaName(int)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 124 | if (idx > 0 && idx < ArraySize(sc_TrnaList)) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function 'void ncbi::objects::s_SetTrnaProduct(ncbi::objects::CTrna_ext&, const string&, std::string&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:186:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 186 | for (int i = 0; i < ArraySize(sc_TrnaList); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48, from seqfeat__.cpp:1: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In function 'ncbi::objects::CCountries::EStateCleanup ncbi::objects::s_DoUSAStateCleanup(std::string&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:4481:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4481 | for ( int j = 0; j < components.size(); j++ ) { | ~~^~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:4518:16: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 4518 | if ( j == match) continue; | ~~^~~~~~~~ -src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 seqalign__.cpp -o seqalign__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 seqblock__.cpp -o seqblock__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 seqfeat__.cpp -o seqfeat__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 seqloc__.cpp -o seqloc__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 seqres__.cpp -o seqres__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 seqtable__.cpp -o seqtable__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq___.cpp -o seq___.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 seqalign___.cpp -o seqalign___.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 seqblock___.cpp -o seqblock___.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 seqfeat___.cpp -o seqfeat___.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::CRef > ncbi::objects::CSeqportUtil_implementation::InitFastIupacnaNcbi2na()': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1681:16: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 1681 | if((ch >= start_at) && (ch < (start_at + size))) | ~~~^~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1681:36: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 1681 | if((ch >= start_at) && (ch < (start_at + size))) | ~~~^~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::CRef > ncbi::objects::CSeqportUtil_implementation::InitFastIupacnaNcbi4na()': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1704:16: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 1704 | if((ch >= start_at) && (ch < (start_at + size))) | ~~~^~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1704:36: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 1704 | if((ch >= start_at) && (ch < (start_at + size))) | ~~~^~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::CRef > ncbi::objects::CSeqportUtil_implementation::InitFastNcbi4naNcbi2na()': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1731:20: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 1731 | if((n1 >= start_at) && (n1 < start_at + size)) | ~~~^~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1731:40: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 1731 | if((n1 >= start_at) && (n1 < start_at + size)) | ~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1735:20: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 1735 | if((n2 >= start_at) && (n2 < start_at + size)) | ~~~^~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp:1735:40: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 1735 | if((n2 >= start_at) && (n2 < start_at + size)) | ~~~^~~~~~~~~~~~~~~~~ BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 seqloc___.cpp -o seqloc___.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 seqres___.cpp -o seqres___.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 seqtable___.cpp -o seqtable___.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp: In member function 'virtual void ncbi::objects::CSeq_id_Giim_Tree::FindMatchStr(const string&, ncbi::objects::CSeq_id_Which_Tree::TSeq_id_MatchList&) const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp:2965:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] 2965 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:1506:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1506 | if ( row_n == p_row ) { | ~~~~~~^~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstDisc(ncbi::CRef&) const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:1652:16: warning: catching polymorphic type 'class ncbi::objects::CAnnotMapperException' by value [-Wcatch-value=] 1652 | catch (CAnnotMapperException) { | ^~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'ssize_t ncbi::objects::CSeq_align_Mapper_Base::x_GetPartialDenseg(ncbi::CRef&, size_t) const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:2618:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 2618 | for (int s = 0; s < start_seg && start_seg_it != m_Segs.end(); | ~~^~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_ConvToDstDisc(ncbi::CRef&) const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:2801:30: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'std::__cxx11::list::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2801 | while (seg >= 0 && seg < m_Segs.size()) { | ~~~~^~~~~~~~~~~~~~~ /usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/so_map.cpp -o so_map.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seq.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /bin/make -C test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test' /bin/make -C unit_test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /bin/make -C seqset -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqset all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/gb_release_file.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqset.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /bin/make -C test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /bin/make -C submit -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh submit all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsubmit.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsubmit.a /bin/ln -f .submit.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.submit.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /bin/make -C seqedit -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqedit all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqedit.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /bin/make -C seqsplit -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqsplit all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqsplit.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqsplit.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /bin/make -C id1 -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test/Makefile cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh id1 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid1.a /bin/ln -f .id1.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id1.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client_.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1cli.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid1cli.a /bin/ln -f .id1cli.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id1cli.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /bin/make -C test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /bin/make -C id2 -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh id2 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2.a /bin/ln -f .id2.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client_.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2cli.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /bin/make -C entrez2 -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh entrez2 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrez2.a /bin/ln -f .entrez2.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrez2.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2cli.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrez2cli.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /bin/make -C demo -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /bin/make -C pubmed -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pubmed all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpubmed.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpubmed.a /bin/ln -f .pubmed.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pubmed.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /bin/make -C medlars -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh medlars all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedlars.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmedlars.a /bin/ln -f .medlars.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.medlars.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /bin/make -C mla -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh mla all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmla.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmla.a /bin/ln -f .mla.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mla.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client_.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmlacli.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmlacli.a /bin/ln -f .mlacli.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mlacli.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /bin/make -C proj -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh proj all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj___.cpp -o proj___.o /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libproj.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libproj.a /bin/ln -f .proj.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.proj.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /bin/make -C scoremat -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh scoremat all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.scoremat.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /bin/make -C blast -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blast all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/names.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xnetblast.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient_.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblastcli.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xnetblastcli.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /bin/make -C blastdb -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastdb all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastdb.a /bin/ln -f .blastdb.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastdb.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /bin/make -C blastxml -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastxml all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastxml.a /bin/ln -f .blastxml.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastxml.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /bin/make -C blastxml2 -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml2.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastxml2.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /bin/make -C mmdb -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/Makefile.sources builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/bin/make -w -j2 --jobserver-auth=16,18"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /bin/make -w -j2 --jobserver-auth=16,18 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' /bin/make -w -j2 --jobserver-auth=16,18 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' /bin/make -w -j2 --jobserver-auth=16,18 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/home/pbumake[6]: warning: -j2 forced in submake: resetting jobserver mode. lk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' Updating dependency information for mmdb3___.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb2__.cpp. Updating dependency information for mmdb1__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 mmdb1__.cpp -o mmdb1__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 mmdb2__.cpp -o mmdb2__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 mmdb3__.cpp -o mmdb3__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 mmdb1___.cpp -o mmdb1___.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 mmdb2___.cpp -o mmdb2___.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mmdb.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /bin/make -C cn3d -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh cn3d all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.cn3d.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /bin/make -C cdd -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh cdd all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.cdd.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /bin/make -C ncbimime -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh ncbimime all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbimime.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /bin/make -C test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /bin/make -C pcsubstance -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcsubstance.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcsubstance.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /bin/make -C pcassay -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcassay all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcassay.a /bin/ln -f .pcassay.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcassay.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /bin/make -C pcassay2 -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcassay2 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay2 MODULE_PATH=objects/pcassay2 MODULE_ASN=pcassay2.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pcassay2.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay2 -or objects/pcassay2 -odi -od pcassay2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay2.dump \ datatool: 2.23.2 make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2__.cpp -o pcassay2__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2___.cpp -o pcassay2___.o /bin/rm -f libpcassay2.a .libpcassay2.a.stamp ar cr libpcassay2.a pcassay2__.o pcassay2___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay2.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay2.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcassay2.a /bin/ln -f .pcassay2.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcassay2.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /bin/make -C gbseq -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gbseq all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gbseq.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /bin/make -C insdseq -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh insdseq all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libinsdseq.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libinsdseq.a /bin/ln -f .insdseq.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.insdseq.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /bin/make -C tinyseq -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh tinyseq all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.tinyseq.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /bin/make -C biotree -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh biotree all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree__.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree___.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiotree.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libbiotree.a /bin/ln -f .biotree.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.biotree.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /bin/make -C entrezgene -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test/Makefile cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh entrezgene all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp:2: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/Entrezgene.cpp: In member function 'ncbi::CRef ncbi::objects::CEntrezgene::FindComment(const string&) const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/Entrezgene.cpp:216:22: warning: loop variable 'root_comment' creates a copy from type 'const ncbi::CRef' [-Wrange-loop-construct] 216 | for ( const auto root_comment : GetComments() ) { | ^~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/Entrezgene.cpp:216:22: note: use reference type to prevent copying 216 | for ( const auto root_comment : GetComments() ) { | ^~~~~~~~~~~~ | & make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrezgene.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /bin/make -C unit_test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /bin/make -C omssa -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh omssa all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libomssa.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libomssa.a /bin/ln -f .omssa.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.omssa.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /bin/make -C remap -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh remap all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap__.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap___.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap___.cpp -o remap___.o /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libremap.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libremap.a /bin/ln -f .remap.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.remap.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client_.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libremapcli.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libremapcli.a /bin/ln -f .remapcli.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.remapcli.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /bin/make -C seqtest -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqtest all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqtest.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /bin/make -C taxon1 -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh taxon1 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp: In member function 'void ncbi::objects::CDomainStorage::AddField(int, int, const string&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp:787:24: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 787 | if( m_types.size() <= field_no ) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~ make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/ctreecont.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/utils.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon1.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtaxon1.a /bin/ln -f .taxon1.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.taxon1.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/local_taxon.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/local_taxon.cpp -o local_taxon.o /bin/rm -f liblocal_taxon.a .liblocal_taxon.a.stamp ar cr liblocal_taxon.a local_taxon.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblocal_taxon.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f liblocal_taxon.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/liblocal_taxon.a /bin/ln -f .local_taxon.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.local_taxon.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /bin/make -C taxon3 -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh taxon3 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon3.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtaxon3.a /bin/ln -f .taxon3.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.taxon3.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /bin/make -C gbproj -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gbproj all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp:9: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp: In member function 'void ncbi::objects::CProjectFolder::RemoveAllChildItems()': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable] 310 | CProjectItem& item = **it; | ^~~~ make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbproj.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgbproj.a /bin/ln -f .gbproj.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gbproj.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /bin/make -C trackmgr -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh trackmgr all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgr.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgr.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrcli.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgrcli.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackset_client.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/blast_client.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/tms_exception.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp -o createremotetrack_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp -o switch_context_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackset_client.cpp -o trackset_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp -o createtrackset_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp -o supported_assemblies_client.o /bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o createremotetrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o trackset_client.o createtrackset_client.o supported_assemblies_client.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrgridcli.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a /bin/ln -f .trackmgrgridcli.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /bin/make -C valerr -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh valerr all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalerr.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvalerr.a /bin/ln -f .valerr.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.valerr.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /bin/make -C valid -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh valid all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalid.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvalid.a /bin/ln -f .valid.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.valid.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /bin/make -C access -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh access all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access__.cpp -o access__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libaccess.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libaccess.a /bin/ln -f .access.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.access.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /bin/make -C docsum -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh docsum all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.docsum.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /bin/make -C featdef -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh featdef all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libfeatdef.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libfeatdef.a /bin/ln -f .featdef.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.featdef.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /bin/make -C genomecoll -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh genome_collection all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all Waiting for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/make_asn.lock. Acquired /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/make_asn.lock for PID 1863258 (make_asn) make[5]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenome_collection.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.genome_collection.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp: In member function 'void ncbi::objects::CGenomicCollectionsService::x_ConfigureConnection()': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:97:18: warning: 'void ncbi::CRPCClient_Base::SetRetryLimit(unsigned int)' is deprecated [-Wdeprecated-declarations] 97 | SetRetryLimit(40); | ~~~~~~~~~~~~~^~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/rpcbase.hpp:44, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/genomecoll/genomic_collections_cli_.hpp:50, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:42, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:41: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/rpcbase_impl.hpp:92:10: note: declared here 92 | void SetRetryLimit(unsigned int n) { SetTryLimit(n); } | ^~~~~~~~~~~~~ make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o /bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgencoll_client.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgencoll_client.a /bin/ln -f .gencoll_client.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gencoll_client.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /bin/make -C gc_cli -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=gc_cli -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp -o gc_cli.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 gc_cli.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgencoll_client-static -lgenome_collection-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lsqlitewrapp-static -lxser-static -lxconnect-static -lxcompress-static -lxutil-static -lxncbi-static -lsqlite3 -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o gc_cli strip gc_cli /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gc_cli /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f gc_cli /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/gc_cli make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /bin/make -C homologene -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh homologene all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.homologene.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /bin/make -C mim -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh mim all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mim.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /bin/make -C objprt -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh objprt all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjprt.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libobjprt.a /bin/ln -f .objprt.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.objprt.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /bin/make -C variation -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh variation all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.23.2 make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.variation.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /bin/make -C macro -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh macro all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro___.cpp -o macro___.o /bin/rm -f libmacro.a .libmacro.a.stamp ar cr libmacro.a macro__.o macro___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmacro.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmacro.a /bin/ln -f .macro.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.macro.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /bin/make -C unit_test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /bin/make -C genesbyloc -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenesbyloc.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.genesbyloc.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /bin/make -C coords -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh objcoords all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m objcoords.asn -M "" -oA \ -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \ datatool: 2.23.2 make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjcoords.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libobjcoords.a /bin/ln -f .objcoords.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.objcoords.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /bin/make -C varrep -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh varrep all make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=11,12 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m varrep.asn -M "" -oA \ -oc varrep -or objects/varrep -odi -od varrep.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \ datatool: 2.23.2 make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o /bin/rm -f libvarrep.a .libvarrep.a.stamp ar cr libvarrep.a varrep__.o varrep___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvarrep.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvarrep.a /bin/ln -f .varrep.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.varrep.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /bin/make -C variation_libs -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -C dbsnp -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs' make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -C search_by_rsid -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' make[5]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh search_by_rsid all make[6]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=15,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr.asn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \ -oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \ datatool: 2.23.2 make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -w -j2 --jobserver-auth=15,16 export-headers make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -w -j2 --jobserver-auth=15,16 flag-stamps make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -w -j2 --jobserver-auth=15,16 all make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp -o search_by_rsid__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp -o search_by_rsid___.o /bin/rm -f libsearchbyrsid.a .libsearchbyrsid.a.stamp ar cr libsearchbyrsid.a search_by_rsid__.o search_by_rsid___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsearchbyrsid.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsearchbyrsid.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsearchbyrsid.a /bin/ln -f .searchbyrsid.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.searchbyrsid.dep make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /bin/make -C tooltip_service -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' make[5]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh dbsnp_tooltip_service all make[6]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -w -j2 --jobserver-auth=15,16 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \ -oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \ datatool: 2.23.2 make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -w -j2 --jobserver-auth=15,16 export-headers make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -w -j2 --jobserver-auth=15,16 flag-stamps make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -w -j2 --jobserver-auth=15,16 all make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp -o dbsnp_tooltip_service__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp -o dbsnp_tooltip_service___.o /bin/rm -f libdbsnp_tooltip_service.a .libdbsnp_tooltip_service.a.stamp ar cr libdbsnp_tooltip_service.a dbsnp_tooltip_service__.o dbsnp_tooltip_service___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_tooltip_service.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_tooltip_service.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbsnp_tooltip_service.a /bin/ln -f .dbsnp_tooltip_service.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbsnp_tooltip_service.dep make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs' /bin/make -C dbsnp -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -C primary_track -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp' make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test/Makefile cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --protobuf dbsnp all make[5]: warning: -j2 forced in submake: resetting jobserver mode. grep: /grpc_cpp_plugin: No such file or directory Warning: Skipping code generation for dbsnp.proto because protoc is unavailable here. File dbsnp.module not found. Using defaults... /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.protobuf MODULE=dbsnp MODULE_PATH=objects/dbsnp/primary_track MODULE_ASN=dbsnp.proto MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/no/need/for/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc -o dbsnp.pb.wrapper.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc -o dbsnp.grpc.pb.wrapper.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp -o snpptis.o /bin/rm -f libdbsnp_ptis.a .libdbsnp_ptis.a.stamp ar cr libdbsnp_ptis.a dbsnp.pb.wrapper.o dbsnp.grpc.pb.wrapper.o snpptis.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_ptis.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_ptis.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbsnp_ptis.a /bin/ln -f .dbsnp_ptis.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbsnp_ptis.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /bin/make -C test -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp' make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' /bin/make -C objmgr -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test/Makefile make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -w -j2 --jobserver-auth=9,10 export-headers make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' make[3]: Nothing to be done for 'export-headers'. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -w -j2 --jobserver-auth=9,10 flag-stamps make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -w -j2 --jobserver-auth=9,10 all make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_id_sort.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split_parser.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/gc_assembly_parser.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_finder.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_saver.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_engine.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/unsupp_editsaver.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_saver.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_edit_commands.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_edit_commands.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_commands_impl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction_impl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_assigner.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_handle.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_graph_handle.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_feat_handle.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/mapped_feat.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader_factory.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_collector.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_mapper.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_mapper.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_type_index.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_ci.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_chunk_info.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_split_info.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seqdesc_ci.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector_ci.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/object_manager.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range_map.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/objmgr_exception.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/align_ci.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_handle.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_handle.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_handle.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_handle.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_ci.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_ci.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_ci.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_ci.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_handle.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_info.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_impl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/heap_scope.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_actions.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_manager_impl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_manager.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_impl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/priority.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_info.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_info.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_base_info.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_info.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info_object.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_ci.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object_index.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/graph_ci.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/feat_ci.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_descr_ci.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_selector.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_cvt.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_types_ci.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/snp_annot_info.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_switch.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/table_field.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_info.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_info.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_setters.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/table_field.cpp -o table_field.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include 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-std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split_parser.cpp -o split_parser.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjmgr.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjmgr.dep make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /bin/make -C test -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test' /bin/make -C util -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/unit_test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/unit_test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_options.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature_edit.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_trimmer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_align_util.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/obj_sniff.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seqtitle.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp -o weight.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp: In function 'void ncbi::objects::GetProteinWeights(const ncbi::objects::CBioseq_Handle&, ncbi::objects::TWeights&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp:363:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] 363 | } catch (CObjmgrUtilException) { | ^~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CRef ncbi::objects::sequence::SourceToProduct(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TS2PFlags, ncbi::objects::CScope*, int*)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:814:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] 814 | } catch (CObjmgrUtilException) { | ^~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CRef ncbi::objects::sequence::ProductToSource(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TP2SFlags, ncbi::objects::CScope*)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:857:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] 857 | } catch (CObjmgrUtilException) { | ^~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:862:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] 862 | } catch (CObjmgrUtilException) { | ^~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp: In member function 'ncbi::CRef ncbi::objects::SRelLoc::Resolve(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*, ncbi::objects::SRelLoc::TFlags) const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:4763:22: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] 4763 | } catch (CObjmgrUtilException) { | ^~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp: In instantiation of 'void ncbi::objects::x_Translate(const Container&, std::string&, int, const ncbi::objects::CGenetic_code*, bool, bool, bool, bool, bool*) [with Container = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:4103:16: required from here /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:3647:43: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 3647 | const size_t usable_size = seq.size() > frame ? seq.size() - frame : 0; | ~~~~~~~~~~~^~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp: In instantiation of 'void ncbi::objects::x_Translate(const Container&, std::string&, int, const ncbi::objects::CGenetic_code*, bool, bool, bool, bool, bool*) [with Container = ncbi::objects::CSeqVector; std::string = std::__cxx11::basic_string]': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:4131:16: required from here /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp:3647:43: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp: In function 'int ncbi::objects::SkipMixedContent(const char*)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp:3691:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 3691 | for (int i = 0; i < sizeof (mixedTags); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CWordPairIndexer::PopulateWordPairIndex(std::string)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp:3768:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3768 | for (int i = 0; i < str.length(); i++) { | ~~^~~~~~~~~~~~~~ BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature.cpp -o feature.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp -o indexer.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProteinIdx(const ncbi::objects::CBioseq_Handle&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp:2230:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2230 | if (offset > 0 && offset < m_MainTitle.length()) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp:2440:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2440 | if (offset > 0 && offset < m_MainTitle.length()) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp: In function 'size_t s_TitleEndsInOrganism(std::string&, ncbi::CTempString)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp:3090:17: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 3090 | if (pos == idx + 2) { | ~~~~^~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'std::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp:4032:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 4032 | for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp: In function 'bool ncbi::objects::sequence::BadSeqLocSortOrder(const ncbi::objects::CBioseq_Handle&, const ncbi::objects::CSeq_loc&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp:612:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] 612 | } catch (CException) { | ^~~~~~~~~~ cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp -o objutil.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp: In instantiation of 'bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp:1824:61: required from here /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp:1752:57: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 1752 | for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp:1114:13: warning: 'bool ncbi::objects::s_IsValidAccession(const string&)' defined but not used [-Wunused-function] 1114 | static bool s_IsValidAccession(const string& acc) | ^~~~~~~~~~~~~~~~~~ /usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef.cpp -o autodef.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/bio/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp: In member function 'bool ncbi::objects::CAutoDefModifierCombo::AddQual(bool, int, bool)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:1033:10: warning: unused variable 'added' [-Wunused-variable] 1033 | bool added = false, rval = false; | ^~~~~ logy/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjutil.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjutil.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /bin/make -C unit_test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /bin/make -C split -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_exceptions.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/size.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/chunk_info.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/annot_piece.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/asn_sizer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/object_splitinfo.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/id_range.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_blob.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 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/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cddalignview/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT manip/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/test/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT validator/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/manip/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT asniotest/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/validator/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT align/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/asniotest/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT snputil/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT uudutil/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/snputil/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT variation/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/uudutil/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT writers/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/variation/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT import/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/writers/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT flatfile/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/import/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/flatfile/Makefile /bin/make -C logging -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/listener.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/message.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/message.cpp -o message.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/listener.cpp -o listener.o /bin/rm -f libxlogging.a .libxlogging.a.stamp ar cr libxlogging.a message.o listener.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxlogging.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxlogging.a /bin/ln -f .xlogging.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xlogging.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /bin/make -C unit_test_util -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/unit_test_util' /bin/make -C readers -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT app/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/line_error.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/message_listener.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_to_enum.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_error.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_converter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_exception.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/best_feat_finder.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_column_data.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_custom.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_standard.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/vcf_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gvf_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_data.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff_base_columns.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_location_merger.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_location_merger.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/wiggle_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/rm_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_base.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/phrap.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/microarray_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_data.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/track_data.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/getfeature.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_error_reporter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_errors.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/alnread.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formats.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/cigar.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/acc_pattern.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/seqid_validate.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/format_guess_ex.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/read_util.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message_handler.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_listener.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message.cpp -o reader_message.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_listener.cpp -o reader_listener.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message_handler.cpp -o reader_message_handler.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/read_util.cpp -o read_util.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/seqid_validate.cpp -o seqid_validate.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include//home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp:58:12: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] 58 | AgpRead(is, entries, component_id_rule, set_gap_data, component_types); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp:33: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here 61 | void AgpRead(CNcbiIstream& is, | ^~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp:74:12: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] 74 | AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp:33: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here 52 | void AgpRead(CNcbiIstream& is, | ^~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp: In member function 'int ncbi::CAgpErrEx::GetCount(ncbi::CAgpErr::EErrCode) const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp:1706:14: warning: comparison between 'enum ncbi::CAgpErr::EErrCode' and 'enum ncbi::CAgpErrEx::' [-Wenum-compare] 1706 | if (code < CODE_Last) { | ~~~~~^~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp: In member function 'virtual void ncbi::CAgpValidateReader::OnObjectChange()': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp:585:28: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] 585 | catch(CException e){ | ^ python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/cigar.cpp -o cigar.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp -o fasta.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbul/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsClustal(ncbi::objects::CAlnFormatGuesser::TSample&, ncbi::objects::CPeekAheadStream&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:137:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 137 | if (lineCount < sample.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsFastaGap(const TSample&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:176:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 176 | for ( ; i < sample.size(); ++i) { | ~~^~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:181:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 181 | if (i < sample.size()) { | ~~^~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsSequin(const TSample&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:234:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 234 | for (int index=0; index < tokens.size(); ++index) { | ~~~~~~^~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsMultAlign(const TSample&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:258:23: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 258 | if (sample.size() < lineIndex + 4) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp:295:22: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] 295 | return (dataSize == (endOffset - startOffset + 1)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ k/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formats.cpp -o aln_formats.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/alnread.cpp -o alnread.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_errors.cpp -o aln_errors.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_error_reporter.cpp -o aln_error_reporter.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp -o aln_formatguess.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp -o aln_util.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp: In function 'void ncbi::objects::AlnUtil::CheckId(const string&, const std::vector&, int, int, bool)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp:56:28: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 56 | if ((orderedIds.size() > idCount) && | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp: In member function 'void ncbi::CAlnReader::x_VerifyAlignmentInfo(const ncbi::objects::SAlignmentFile&, ncbi::CAlnReader::TReadFlags)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp:409:29: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 409 | for (int i=0; i< numDeflines; ++i) { | ~^~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp: In member function 'bool ncbi::CAlnReader::x_IsGap(ncbi::CAlnReader::TNumrow, ncbi::TSeqPos, const string&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp:461:13: warning: comparison of integer expressions of different signedness: 'ncbi::CAlnReader::TNumrow' {aka 'int'} and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 461 | if (row > m_MiddleSections.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp: In member function 'void ncbi::CAlnReader::x_AssignDensegIds(ncbi::CAlnReader::TFastaFlags, ncbi::objects::CDense_seg&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp:507:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 507 | if (i < m_DeflineInfo.size() && !m_DeflineInfo[i].mData.empty()) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp: In member function 'virtual void ncbi::objects::CAlnScanner::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp:92:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 92 | for (auto i=0; i < mSequences.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp: In member function 'bool ncbi::objects::CAlnScanner::xSeqIdIsEqualToInfoAt(const string&, int)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp:233:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 233 | if (index >= mSeqIds.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp: In member function 'void ncbi::objects::CAlnScannerClustal::sProcessClustalDataLine(const std::vector >&, int, int, int, bool, int&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp:296:27: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] 296 | if (currentLineLength != blockLineLength) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp -o aln_scanner.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp -o aln_scanner_fastagap.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp -o aln_scanner_clustal.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp -o aln_scanner_nexus.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/b/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp:129:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 129 | if (dataLineCount < mSequenceCount) { // in first block | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp:210:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 210 | if (mSequenceCount != mSeqIds.size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp: In member function 'virtual void ncbi::objects::CAlnScannerMultAlign::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp:125:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 125 | if (lineInBlock != expectedNumSequences) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp:135:48: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 135 | if (!inFirstBlock && lineInBlock == expectedNumSequences) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp: In member function 'virtual void ncbi::objects::CAlnScannerSequin::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:75:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 75 | if (lineInBlock != mSeqIds.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:156:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 156 | if (lineInBlock >= mSeqIds.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:186:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 186 | for (auto i = 0; i < seqData.size(); ++i) { | ~~^~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp: In static member function 'static bool ncbi::objects::CAlnScannerSequin::xExtractSequinSequenceData(const string&, std::string&, std::string&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:259:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 259 | for (auto curBlock = 3; curBlock < tokens.size() - 1; ++curBlock) { | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:264:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 264 | for (auto curBlock = 1; curBlock < tokens.size(); ++curBlock) { | ~~~~~~~~~^~~~~~~~~~~~~~~ iology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp -o aln_scanner_phylip.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp -o aln_scanner_sequin.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp -o aln_scanner_multalign.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/track_data.cpp -o track_data.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/phrap.cpp -o phrap.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/inclu/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp: In member function 'bool ncbi::objects::CFeatureTableReader_Imp::x_AddQualifierToCdregion(ncbi::CRef, ncbi::objects::CSeqFeatData&, ncbi::objects::CFeatureTableReader_Imp::EQual, const string&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp:1407:22: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] 1407 | } catch( CStringException ) { | ^~~~~~~~~~~~~~~~ de/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_location_merger.cpp -o gff3_location_merger.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_location_merger.cpp -o gtf_location_merger.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff_base_columns.cpp -o gff_base_columns.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gvf_reader.cpp -o gvf_r/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector >&, bool, std::vector&) const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp:832:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] 832 | for (auto i=0; i >&, ncbi::objects::ENa_strand, ncbi::objects::ENa_strand, ncbi::TSeqPos, ncbi::TSeqPos, const ncbi::objects::CGff2Record&, ncbi::objects::CSeq_align_Base::C_Segs::TDenseg&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp:921:21: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 921 | for (auto i=0; i)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp:1006:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] 1006 | for (auto i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 144 | if (mBlockCount != mBlockSizes.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp:150:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 150 | if (mBlockCount != mBlockStartsQ.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp:156:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 156 | if (mBlockCount != mBlockStartsT.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp: In member function 'virtual bool ncbi::objects::CBedReader::xDetermineLikelyColumnCount(ncbi::objects::CLinePreBuffer&, ncbi::objects::ILineErrorListener*)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp:484:35: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 484 | if (blockSizes.size() != blockCount) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp:505:36: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 505 | if (blockStarts.size() != blockCount) { | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ eader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_reader.cpp -o psl_reader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp -o psl_data.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql.cpp -o bed_autosql.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_standard.cpp -o bed_autosql_standard.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_custom.cpp -o bed_autosql_custom.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_column_data.cpp -o bed_column_data.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/w/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp: In function 'void ncbi::objects::s_GetPrimerInfo(const ncbi::objects::CSourceModParser::SMod*, const ncbi::objects::CSourceModParser::SMod*, std::vector, std::__cxx11::basic_string > >&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp:877:20: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] 877 | for (int i=0; i&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp:912:25: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 912 | for (auto i=0; i base_length) { /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'void ncbi::CSeqDBVol::GetRawSeqAndAmbig(int, const char**, int*, int*) const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2998:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] 2998 | TIndx map_end = 0; | ^~~~~~~ bi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /home/pbulk/build/biology/ncbi-blast+/work/.cwr/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:972:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] 972 | int found_short(-1); | ^~~~~~~~~~~ apper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/p/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp: In member function 'void ncbi::CSeqDBLMDB::GetOidsForTaxIds(const std::set&, std::vector&, std::vector&) const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:642:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 642 | for (int i=0; i < oids_set.size(); i++) { | ~~^~~~~~~~~~~~~~~~~ kg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqdb.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqdb.a /bin/ln -f .seqdb.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqdb.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /bin/make -C demo -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j2 --jobserver-auth=15,16 flag-stamps make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j2 --jobserver-auth=15,16 all make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 seqdb_demo.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o seqdb_demo strip seqdb_demo /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_demo /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seqdb_demo make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /bin/make -C test -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j2 --jobserver-auth=15,16 flag-stamps make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j2 --jobserver-auth=15,16 all make[6]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'void CSeqDBPerfApp::x_UpdateMemoryUsage(int)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:23: warning: 'bool ncbi::GetMemoryUsage(size_t*, size_t*, size_t*)' is deprecated [-Wdeprecated-declarations] 114 | if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:36: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:511:13: note: declared here 511 | extern bool GetMemoryUsage(size_t* total, size_t* resident, size_t* shared); | ^~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'int CSeqDBPerfApp::x_ScanDatabase()': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:154:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 154 | for (ssize_t i = 0; i < oids2iterate.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~ make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 seqdb_perf.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -lpthread -o seqdb_perf strip seqdb_perf /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_perf /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seqdb_perf make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /bin/make -C seqdb_writer -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu+/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp: In member function 'void ncbi::CWriteDB_LMDB::x_CommitTransaction()': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:295:55: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] 295 | unsigned int num_threads = GetCpuCount(); | ~~~~~~~~~~~^~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbifile.hpp:53, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:35: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here 479 | unsigned int GetCpuCount(void) | ^~~~~~~~~~~ +17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o /bin/rm -f libwritedb.a .libwritedb.a.stamp ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libwritedb.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libwritedb.a /bin/ln -f .writedb.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.writedb.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /bin/make -C unit_test -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' make[5]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /bin/make -C gene_info_reader -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgene_info.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgene_info.a /bin/ln -f .gene_info.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gene_info.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /bin/make -C demo -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j2 --jobserver-auth=15,16 flag-stamps make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j2 --jobserver-auth=15,16 all make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 gene_info_reader_app.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -lpthread -o gene_info_reader strip gene_info_reader /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f gene_info_reader /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/gene_info_reader make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /bin/make -C unit_test -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' make[5]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /bin/make -C gene_info_writer -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' /bin/make -C services -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services/blast_services.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast_services.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblast_services.a /bin/ln -f .blast_services.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blast_services.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /bin/make -C unit_test -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' make[5]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /bin/make -C blastdb_format -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); | ^ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); | ^ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); | ^ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); | ^ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] 49 | CSeqFormatterConfig config /* = CSeqFormatterConfig() */) | ^ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] 270 | void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) | ^ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb_format.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastdb_format.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /bin/make -C unit_test -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' make[5]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast' /bin/make -C lds2 -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2' /bin/make -C pubseq_gateway -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cassandra/Makefile test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT protobuf/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cache/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ipg/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg/Makefile /bin/make -C cassandra -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra' /bin/make -C client -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp -o psg_client.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp -o psg_client_transport.o /bin/rm -f libpsg_client.a .libpsg_client.a.stamp ar cr libpsg_client.a psg_client.o psg_client_transport.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpsg_client.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpsg_client.a /bin/ln -f .psg_client.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.psg_client.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /bin/make -C test -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /bin/make -C protobuf -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf' /bin/make -C cache -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache' /bin/make -C ipg -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' /bin/make -C data_loaders -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lds2/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT patcher/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT asn_cache/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cdd/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache/Makefile /bin/make -C genbank -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[5]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubseq/Makefile test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubseq2/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test/Makefile make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j2 --jobserver-auth=15,16 export-headers make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j2 --jobserver-auth=15,16 export-headers make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j2 --jobserver-auth=15,16 flag-stamps make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j2 --jobserver-auth=15,16 flag-stamps make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j2 --jobserver-auth=15,16 all make[6]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp: In function 'std::string ncbi::objects::{anonymous}::sx_ErrorSeqIds(ncbi::objects::CReaderRequestResult&, const std::vector&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:1144:37: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 1144 | if (++total > kMaxErrorSeqIds) continue; | ~~~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:1151:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 1151 | if (total > kMaxErrorSeqIds) { | ~~~~~~^~~~~~~~~~~~~~~~~ make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp -o wgsmaster.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/ho/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp: In constructor 'ncbi::objects::CBlob_id::CBlob_id(ncbi::CTempString)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp:51:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] 51 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ me/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp /bin/rm -f libncbi_xreader-dll.so .libncbi_xreader-dll.so.stamp /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -shared -o libncbi_xreader-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 -fPIC dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader.dep /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.so /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader-dll.so /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader-dll.so /bin/ln -f .ncbi_xreader-dll.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader-dll.dep make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j2 --jobserver-auth=15,16 all make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp -o gbnative.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp -o psg_loader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp /bin/rm -f libncbi_xloader_genbank-dll.so .libncbi_xloader_genbank-dll.so.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -shared -o libncbi_xloader_genbank-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 -fPIC gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgeneral -lncbi_xreader-dll -lz -lbz2 -llzo2 -lzstd -lm -lpthread /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.a /bin/ln -f .ncbi_xloader_genbank.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank.dep /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.so /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank-dll.so /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank-dll.so /bin/ln -f .ncbi_xloader_genbank-dll.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank-dll.dep make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /bin/make -C cache -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j2 --jobserver-auth=15,16 export-headers make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j2 --jobserver-auth=15,16 flag-stamps make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j2 --jobserver-auth=15,16 all make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp /bin/rm -f libncbi_xreader_cache-dll.so .libncbi_xreader_cache-dll.so.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -shared -o libncbi_xreader_cache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 -fPIC reader_cache.o writer_cache.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -lpthread /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a /bin/ln -f .ncbi_xreader_cache.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.so /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache-dll.so /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.so /bin/ln -f .ncbi_xreader_cache-dll.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /bin/make -C pubseq -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' /bin/make -C id2 -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j2 --jobserver-auth=15,16 export-headers make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j2 --jobserver-auth=15,16 flag-stamps make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j2 --jobserver-auth=15,16 all make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp /bin/rm -f libncbi_xreader_id2-dll.so .libncbi_xreader_id2-dll.so.stamp ar cr libncbi_xreader_id2.a reader_id2.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -shared -o libncbi_xreader_id2-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 -fPIC reader_id2.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lm -lpthread /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2.a /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.so /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2-dll.so /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2-dll.so /bin/ln -f .ncbi_xreader_id2.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2.dep /bin/ln -f .ncbi_xreader_id2-dll.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2-dll.dep make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /bin/make -C id1 -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j2 --jobserver-auth=15,16 export-headers make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j2 --jobserver-auth=15,16 flag-stamps make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j2 --jobserver-auth=15,16 all make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp /bin/rm -f libncbi_xreader_id1-dll.so .libncbi_xreader_id1-dll.so.stamp ar cr libncbi_xreader_id1.a reader_id1.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -shared -o libncbi_xreader_id1-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 -fPIC reader_id1.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lm -lpthread /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.a /bin/ln -f .ncbi_xreader_id1.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1.dep /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.so /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1-dll.so /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1-dll.so /bin/ln -f .ncbi_xreader_id1-dll.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1-dll.dep make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /bin/make -C pubseq2 -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' /bin/make -C gicache -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w -j2 --jobserver-auth=15,16 export-headers make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w -j2 --jobserver-auth=15,16 flag-stamps make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w -j2 --jobserver-auth=15,16 all make[6]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'x_DataToGiData': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:289:14: warning: unused variable 'logmsg' [-Wunused-variable] 289 | char logmsg[256]; | ^~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_LoadAdd': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:635:9: warning: unused variable 'acc_len' [-Wunused-variable] 635 | int acc_len; | ^~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_SetMeta': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:25: warning: unused variable 'stime' [-Wunused-variable] 833 | char meta[512], stime[128]; | ^~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:14: warning: unused variable 'meta' [-Wunused-variable] 833 | char meta[512], stime[128]; | ^~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_GetAccFreqTab': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:984:25: warning: unused variable 'gi_len' [-Wunused-variable] 984 | int64_t gi_len = 0; | ^~~~~~ make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o /bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp /bin/rm -f libncbi_xreader_gicache-dll.so .libncbi_xreader_gicache-dll.so.stamp ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -shared -o libncbi_xreader_gicache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 -fPIC reader_gicache.o gicache.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -llmdb -lpthread /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache.a /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache-dll.so /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f .ncbi_xreader_gicache.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache.dep /bin/ln -f libncbi_xreader_gicache-dll.so /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache-dll.so /bin/ln -f .ncbi_xreader_gicache-dll.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache-dll.dep make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /bin/make -C test -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /bin/make -C lds2 -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' /bin/make -C blastdb -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test/Makefile make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j2 --jobserver-auth=15,16 export-headers make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j2 --jobserver-auth=15,16 export-headers make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j2 --jobserver-auth=15,16 flag-stamps make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j2 --jobserver-auth=15,16 flag-stamps make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j2 --jobserver-auth=15,16 all make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j2 --jobserver-auth=15,16 all make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /bin/make -C unit_test -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /bin/make -C patcher -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' /bin/make -C asn_cache -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' /bin/make -C cdd -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders' /bin/make -C simple -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple TMPL=xobjsimple -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple TMPL=xobjsimple -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple TMPL=xobjsimple -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple/simple_om.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp ar cr libxobjsimple.a simple_om.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjsimple.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjsimple.a /bin/ln -f .xobjsimple.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjsimple.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/simple' /bin/make -C alnmgr -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in` /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test/Makefile make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_container.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alntext.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnseq.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmix.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alndiag.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp:1475:35: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CAlnMap::TNumrow' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1475 | for (TNumrow row = 0; row < selected_rows.size(); row++) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 76 | match1->m_ChainScore == match2->m_ChainScore && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 77 | match1->m_Score > match2->m_Score || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 192 | (aln_seq1->m_StrandScore > 0 && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 193 | strand1 == eNa_strand_minus || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 196 | aln_seq2->m_StrandScore > 0 && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 197 | strand2 == eNa_strand_minus || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 198 | aln_seq2->m_StrandScore < 0 && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 199 | strand2 != eNa_strand_minus)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 311 | if (plus && prev_start_plus_len < start || | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ _BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/u/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 136 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 300 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'std::string& ncbi::CSparseAln::GetAlnSeqString(ncbi::IAlnExplorer::TNumrow, std::string&, const TSignedRange&, bool) const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:702:46: warning: comparison of integer expressions of different signedness: 'ncbi::COpenRange::position_type' {aka 'int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 702 | if (translate && aln_range.GetLength() >= trim_from + trim_to) { | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: In member function 'ncbi::CAlignRangeCollExtender::position_type ncbi::CAlignRangeCollExtender::GetSecondFrom() const [with TColl = ncbi::CAlignRangeCollectionList >]', inlined from 'ncbi::CRange ncbi::CAlignRangeCollExtender::GetSecondRange() const [with TColl = ncbi::CAlignRangeCollectionList >]' at /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/align_range_coll.hpp:1897:16, inlined from 'void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)' at /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:230:49: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/align_range_coll.hpp:1876:16: warning: '*(long unsigned int*)((char*)&ext + offsetof(ncbi::CAlignRangeCollExtender > >,ncbi::CAlignRangeCollExtender > >::m_From))' may be used uninitialized [-Wmaybe-uninitialized] 1876 | return m_From; | ^~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:228:46: note: 'ext' declared here 228 | CAlignRangeCollExtender ext(*m_Aln->GetPairwiseAlns()[row]); | ^~~ sr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalnmgr.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalnmgr.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /bin/make -C demo -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' /bin/make -C unit_test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /bin/make -C cddalignview -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cddalignview' /bin/make -C test -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/test' /bin/make -C manip -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/manip' /bin/make -C eutils -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/linkout/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/linkout/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/linkout/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT linkout/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/linkout/Makefile /bin/make -C egquery -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' make[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd egquery all make[5]: warning: -j2 forced in submake: resetting jobserver mode. File egquery.module not found. Using defaults... /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=egquery MODULE_PATH=objtools/eutils/egquery MODULE_ASN=egquery.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m egquery.dtd -M "" -oA \ -oc egquery -or objtools/eutils/egquery -odi -od egquery.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd egquery.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery TMPL=egquery -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery TMPL=egquery -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery TMPL=egquery -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery__.cpp -o egquery__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/egquery/egquery___.cpp -o egquery___.o /bin/rm -f libegquery.a .libegquery.a.stamp ar cr libegquery.a egquery__.o egquery___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libegquery.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libegquery.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libegquery.a /bin/ln -f .egquery.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.egquery.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /bin/make -C elink -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' make[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd elink all make[5]: warning: -j2 forced in submake: resetting jobserver mode. File elink.module not found. Using defaults... /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=elink MODULE_PATH=objtools/eutils/elink MODULE_ASN=elink.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m elink.dtd -M "" -oA \ -oc elink -or objtools/eutils/elink -odi -od elink.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd elink.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink TMPL=elink -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink TMPL=elink -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink TMPL=elink -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink__.cpp -o elink__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/elink/elink___.cpp -o elink___.o /bin/rm -f libelink.a .libelink.a.stamp ar cr libelink.a elink__.o elink___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libelink.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libelink.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libelink.a /bin/ln -f .elink.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.elink.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/elink' /bin/make -C epost -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' make[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd epost all make[5]: warning: -j2 forced in submake: resetting jobserver mode. File epost.module not found. Using defaults... /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=epost MODULE_PATH=objtools/eutils/epost MODULE_ASN=epost.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m epost.dtd -M "" -oA \ -oc epost -or objtools/eutils/epost -odi -od epost.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd epost.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost TMPL=epost -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost TMPL=epost -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost TMPL=epost -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost__.cpp -o epost__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/epost/epost___.cpp -o epost___.o /bin/rm -f libepost.a .libepost.a.stamp ar cr libepost.a epost__.o epost___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libepost.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libepost.a /bin/ln -f .epost.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.epost.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/epost' /bin/make -C esearch -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' make[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd esearch all make[5]: warning: -j2 forced in submake: resetting jobserver mode. File esearch.module not found. Using defaults... /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=esearch MODULE_PATH=objtools/eutils/esearch MODULE_ASN=esearch.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m esearch.dtd -M "" -oA \ -oc esearch -or objtools/eutils/esearch -odi -od esearch.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd esearch.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch TMPL=esearch -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch TMPL=esearch -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch TMPL=esearch -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch__.cpp -o esearch__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esearch/esearch___.cpp -o esearch___.o /bin/rm -f libesearch.a .libesearch.a.stamp ar cr libesearch.a esearch__.o esearch___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libesearch.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libesearch.a /bin/ln -f .esearch.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.esearch.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /bin/make -C espell -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' make[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd espell all make[5]: warning: -j2 forced in submake: resetting jobserver mode. File espell.module not found. Using defaults... /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=espell MODULE_PATH=objtools/eutils/espell MODULE_ASN=espell.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m espell.dtd -M "" -oA \ -oc espell -or objtools/eutils/espell -odi -od espell.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd espell.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell TMPL=espell -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell TMPL=espell -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell TMPL=espell -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell__.cpp -o espell__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/espell/espell___.cpp -o espell___.o /bin/rm -f libespell.a .libespell.a.stamp ar cr libespell.a espell__.o espell___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libespell.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libespell.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libespell.a /bin/ln -f .espell.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.espell.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/espell' /bin/make -C esummary -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' make[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd esummary all make[5]: warning: -j2 forced in submake: resetting jobserver mode. File esummary.module not found. Using defaults... /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=esummary MODULE_PATH=objtools/eutils/esummary MODULE_ASN=esummary.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m esummary.dtd -M "" -oA \ -oc esummary -or objtools/eutils/esummary -odi -od esummary.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd esummary.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary TMPL=esummary -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary TMPL=esummary -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary TMPL=esummary -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary__.cpp -o esummary__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/esummary/esummary___.cpp -o esummary___.o /bin/rm -f libesummary.a .libesummary.a.stamp ar cr libesummary.a esummary__.o esummary___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesummary.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libesummary.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libesummary.a /bin/ln -f .esummary.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.esummary.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /bin/make -C linkout -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/linkout' /bin/make -C einfo -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' make[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd einfo all make[5]: warning: -j2 forced in submake: resetting jobserver mode. File einfo.module not found. Using defaults... /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=einfo MODULE_PATH=objtools/eutils/einfo MODULE_ASN=einfo.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m einfo.dtd -M "" -oA \ -oc einfo -or objtools/eutils/einfo -odi -od einfo.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd einfo.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo TMPL=einfo -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo TMPL=einfo -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo TMPL=einfo -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo__.cpp -o einfo__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o /bin/rm -f libeinfo.a .libeinfo.a.stamp ar cr libeinfo.a einfo__.o einfo___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libeinfo.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libeinfo.a /bin/ln -f .einfo.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.einfo.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /bin/make -C uilist -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' make[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd uilist all make[5]: warning: -j2 forced in submake: resetting jobserver mode. File uilist.module not found. Using defaults... /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=uilist MODULE_PATH=objtools/eutils/uilist MODULE_ASN=uilist.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m uilist.dtd -M "" -oA \ -oc uilist -or objtools/eutils/uilist -odi -od uilist.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd uilist.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist TMPL=uilist -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist TMPL=uilist -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist TMPL=uilist -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist__.cpp -o uilist__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/uilist/uilist___.cpp -o uilist___.o /bin/rm -f libuilist.a .libuilist.a.stamp ar cr libuilist.a uilist__.o uilist___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libuilist.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libuilist.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libuilist.a /bin/ln -f .uilist.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.uilist.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /bin/make -C ehistory -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' make[4]: warning: -j2 forced in submake: resetting jobserver mode. cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --dtd ehistory all make[5]: warning: -j2 forced in submake: resetting jobserver mode. File ehistory.module not found. Using defaults... /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ehistory MODULE_PATH=objtools/eutils/ehistory MODULE_ASN=ehistory.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m ehistory.dtd -M "" -oA \ -oc ehistory -or objtools/eutils/ehistory -odi -od ehistory.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ehistory.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp -o ehistory__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp -o ehistory___.o /bin/rm -f libehistory.a .libehistory.a.stamp ar cr libehistory.a ehistory__.o ehistory___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libehistory.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libehistory.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libehistory.a /bin/ln -f .ehistory.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ehistory.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /bin/make -C efetch -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test/Makefile cd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch && /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --xsd efetch all make[5]: warning: -j2 forced in submake: resetting jobserver mode. File efetch.module not found. Using defaults... /bin/make -w -j2 --jobserver-auth=13,14 -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=efetch MODULE_PATH=objtools/eutils/efetch MODULE_ASN=efetch.xsd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m efetch.xsd -M "" -oA \ -oc efetch -or objtools/eutils/efetch -odi -od efetch.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd efetch.dump \ datatool: 2.23.2 make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch TMPL=efetch -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch TMPL=efetch -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch TMPL=efetch -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp:282: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/PubmedArticle.cpp: In function 'std::string eutils::{anonymous}::utf8_to_string(const string&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/PubmedArticle.cpp:157:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] 157 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch___.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch__.cpp -o efetch__.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/efetch/efetch___.cpp -o efetch___.o /bin/rm -f libefetch.a .libefetch.a.stamp ar cr libefetch.a efetch__.o efetch___.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libefetch.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libefetch.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libefetch.a /bin/ln -f .efetch.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.efetch.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /bin/make -C test -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /bin/make -C api -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api TMPL=eutils -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api TMPL=eutils -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api TMPL=eutils -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp: In member function 'virtual ncbi::CRef ncbi::CEFetch_Request::FetchIdList(int)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp:133:12: warning: catching polymorphic type 'class ncbi::CSerialException' by value [-Wcatch-value=] 133 | catch (CSerialException) { | ^~~~~~~~~~~~~~~~ make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/ehistory.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/espell.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esummary.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/elink.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/epost.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/egquery.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esearch.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/einfo.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/eutils.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/eutils.cpp -o eutils.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/efetch.cpp -o efetch.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/einfo.cpp -o einfo.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esearch.cpp -o esearch.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/egquery.cpp -o egquery.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/epost.cpp -o epost.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/elink.cpp -o elink.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/esummary.cpp -o esummary.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/espell.cpp -o espell.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/eutils/api/ehistory.cpp -o ehistory.o /bin/rm -f libeutils.a .libeutils.a.stamp ar cr libeutils.a eutils.o efetch.o einfo.o esearch.o egquery.o epost.o elink.o esummary.o espell.o ehistory.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libeutils.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libeutils.a /bin/ln -f .eutils.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.eutils.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils/api' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/eutils' /bin/make -C edit -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/unit_test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/unit_test/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubmed_fetch/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubmed_citmatch/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test_remote_updater/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch/Makefile make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit TMPL=edit -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit TMPL=edit -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit TMPL=edit -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_loader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file_process.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pub_fix.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_edit.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feature_propagate.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/external_annots.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gap_trim.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/publication_edit.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/eutils_updater.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/rna_edit.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/source_edit.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feattable_edit.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/mail_report.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/loc_edit.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gb_block_field.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_desc_field.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/struc_comm_field.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/dblink_field.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int, bool, int, int, int)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1850:71: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1850 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { | ~~~~~~^~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1852:74: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1852 | } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { | ~~~~~~^~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1875:63: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1875 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { | ~~~~~~^~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1877:66: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1877 | } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { | ~~~~~~^~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSequenceAndAnnotation(ncbi::objects::CBioseq_Handle, const TCuts&, ncbi::objects::edit::EInternalTrimType)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2185:14: warning: variable 'cds_range' set but not used [-Wunused-but-set-variable] 2185 | auto cds_range = copy_feat->GetLocation().GetTotalRange(); | ^~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::UpdateSeqLength(ncbi::CAutoInitRef&, ncbi::objects::CBioseq_Handle&, ncbi::objects::CSeqMap_CI&, ncbi::objects::CSeq_inst_Base::TLength&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:12: warning: enumeration value 'eSeqSubMap' not handled in switch [-Wswitch] 2459 | switch (seqmap_ci.GetType()) { | ^ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:12: warning: enumeration value 'eSeqRef' not handled in switch [-Wswitch] /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:12: warning: enumeration value 'eSeqEnd' not handled in switch [-Wswitch] /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:12: warning: enumeration value 'eSeqChunk' not handled in switch [-Wswitch] /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:12: warning: enumeration value 'eSeqLiteral' not handled in switch [-Wswitch] /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'bool ncbi::objects::edit::s_FindSegment(const ncbi::objects::CDense_seg&, ncbi::objects::CDense_seg_Base::TDim, ncbi::TSeqPos, ncbi::objects::CDense_seg_Base::TNumseg&, ncbi::TSeqPos&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2882:21: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] 2882 | if (pos >= start && pos < start + len) { | ~~~~^~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2882:39: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] 2882 | if (pos >= start && pos < start + len) { | ~~~~^~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqAlign(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:3086:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] 3086 | else if (seg_start < cut_from) { | ~~~~~~~~~~^~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:3089:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] 3089 | else if (seg_start >= cut_from && | ~~~~~~~~~~^~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp: In member function 'void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, ncbi::objects::edit::CPromote::TRnaMap*) const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp:224:51: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] 224 | CCdregion_translate::TranslateCdregion(data, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 225 | feat, | ~~~~~ 226 | x_Scope(), | ~~~~~~~~~~ 227 | include_stop, | ~~~~~~~~~~~~~ 228 | remove_trailingX); | ~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp:52: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:966:17: note: declared here 966 | static void TranslateCdregion(string& prot, | ^~~~~~~~~~~~~~~~~ /c++/src/objtools/edit/seqid_guesser.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/string_constraint.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/apply_object.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/field_handler.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gene_utils.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/promote.cpp -o promote.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o /home/pbulk/build/biology/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp: In constructor 'ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:48: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] 92 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:35, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag_.hpp:43, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag.hpp:44, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:5461:11: note: declared here 5461 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, | ^~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp: In static member function 'static std::vector > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:44: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] 171 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/serialbase.hpp:35, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag_.hpp:43, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objects/general/Dbtag.hpp:44, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:5461:11: note: declared here 5461 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, | ^~~~ /ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/field_handler.cpp -o field_handler.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/apply_object.cpp -o apply_object.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-48/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp:457:57: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] 457 | any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp:463:39: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] 463 | AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/mail_report.cpp -o mail_report.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/source_edit.cpp -o source_edit.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/rna_edit.cpp:259:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 259 | for (int j = i + 1; j < spans.size(); j++) | ~~^~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp: In member function 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::CSeqdesc&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:356:23: warning: 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::edit::CRemoteUpdater::FLogger, ncbi::objects::CSeqdesc&)' is deprecated [-Wdeprecated-declarations] 356 | UpdateOrgFromTaxon(m_logger, desc); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:318:6: note: declared here 318 | void CRemoteUpdater::UpdateOrgFromTaxon(FLogger logger, CSeqdesc& desc) | ^~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp: In member function 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::CSeq_entry&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:586:23: warning: 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::edit::CRemoteUpdater::FLogger, ncbi::objects::CSeq_entry&)' is deprecated [-Wdeprecated-declarations] 586 | UpdateOrgFromTaxon(m_logger, entry); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:552:6: note: declared here 552 | void CRemoteUpdater::UpdateOrgFromTaxon(FLogger logger, CSeq_entry& entry) | ^~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp: In member function 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::edit::CRemoteUpdater::FLogger, ncbi::objects::CSeq_entry_EditHandle&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:593:31: warning: 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::edit::CRemoteUpdater::FLogger, ncbi::objects::CSeqdesc&)' is deprecated [-Wdeprecated-declarations] 593 | UpdateOrgFromTaxon(logger, (CSeqdesc&)*desc_it); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp:318:6: note: declared here 318 | void CRemoteUpdater::UpdateOrgFromTaxon(FLogger logger, CSeqdesc& desc) | ^~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const string&, const string&, ncbi::SIZE_TYPE, bool, bool)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp:47:25: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] 47 | pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/edit/parse_text_options.hpp:34, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp:33: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:5461:11: note: declared here 5461 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, | ^~~~ /include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/eutils_updater.cpp -o eutils_updater.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: 'std::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const string&)' defined but not used [-Wunused-function] 336 | static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) | ^~~~~~~~~~~~~~~~~~~~~~~~ -src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/external_annots.cpp -o external_annots.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/feature_propagate.cpp -o feature_propagate.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/seq_edit.cpp -o seq_edit.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/pub_fix.cpp -o pub_fix.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_reader.cpp -o huge_asn_reader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file.cpp -o huge_file.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_file_process.cpp -o huge_file_process.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_loader.cpp -o huge_asn_loader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp -o huge_asn_macro_reader.o /bin/rm -f libxobjedit.a .libxobjedit.a.stamp ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o eutils_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o pub_fix.o huge_asn_reader.o huge_file.o huge_file_process.o huge_asn_loader.o huge_asn_macro_reader.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjedit.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjedit.a /bin/ln -f .xobjedit.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjedit.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /bin/make -C unit_test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test' /bin/make -C pubmed_fetch -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch' /bin/make -C pubmed_citmatch -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch' /bin/make -C test_remote_updater -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/edit' /bin/make -C cleanup -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup/test/Makefile make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup TMPL=cleanup -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup TMPL=cleanup -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup TMPL=cleanup -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/influenza_set.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_message.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_pub.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_author.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp:2909:68: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 2909 | if (abs((long int)this_start - (long int)prev_end) < min_len) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::DecodeXMLMarkChanged(std::string&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp:4192:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 4192 | idx < sizeof(transformations)/sizeof(transformations[0]); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp: In static member function 'static bool ncbi::objects::CCleanup::s_AddNumToUserField(ncbi::objects::CUser_field&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:398:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 398 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetStrs().size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:404:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 404 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetInts().size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:410:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 410 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetReals().size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:416:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] 416 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetOss().size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_RemoveFlankingQuotes(std::string&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:5939:22: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 5939 | for( ; first_pos <= last_pos ; ++first_pos, --last_pos ) { | ~~~~~~~~~~^~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:5953:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 5953 | if( first_pos > last_pos ) { | ~~~~~~~~~~^~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::CapitalizeAfterApostrophe(std::string&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp:914:25: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 914 | if (rslt[0] != start) | ~~~~~~~~^~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixAffiliationShortWordsInElement(std::string&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp:953:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 953 | if (rslt[0] != start) | ~~~~~~~~^~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixOrdinalNumbers(std::string&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp:980:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 980 | if (rslt[0] != start) | ~~~~~~~~^~~~~~~~ -src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_pub.cpp -o cleanup_pub.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/fix_feature_id.cpp -o fix_feature_id.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp -o huge_file_cleanup.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cleanup/influenza_set.cpp -o influenza_set.o /bin/rm -f libxcleanup.a .libxcleanup.a.stamp ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o huge_file_cleanup.o influenza_set.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcleanup.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcleanup.a /bin/ln -f .xcleanup.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcleanup.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /bin/make -C test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup/test' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cleanup' /bin/make -C format -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format TMPL=xformat -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format TMPL=xformat -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format TMPL=xformat -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_qual_slots.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gene_finder.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/inst_info_map.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/html_anchor_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_iter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/cigar_formatter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sam_formatter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_project_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gap_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/alignment_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_config.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gbseq_formatter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_formatter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_gather.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/origin_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_ostream.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/format_item_ostream.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_formatter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_formatter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_gather.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_gather.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/context.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_seqloc.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/tsa_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/wgs_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/version_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sequence_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/segment_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/reference_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/locus_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ctrl_items.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/feature_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/defline_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/dbsource_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/date_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/contig_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/basecount_item.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/accession_item.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/pyth/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp: In function 'void ncbi::objects::s_GetAssemblyInfo(const ncbi::objects::CBioseqContext&, std::string&, const ncbi::objects::CUser_object&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp:469:16: warning: unused variable 'is_html' [-Wunused-variable] 469 | const bool is_html = ctx.Config().DoHTML(); | ^~~~~~~ on3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/comment_item.cpp -o comment_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/date_item.cpp -o date_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/p/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/feature_item.cpp: In function 'const string& ncbi::objects::s_AaName(int)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/feature_item.cpp:2155:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 2155 | if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp: In member function 'virtual void ncbi::objects::CKeywordsItem::x_GatherInfo(ncbi::objects::CBioseqContext&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp:345:18: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] 345 | } catch (CException) { | ^~~~~~~~~~ bulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_item.cpp -o genome_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/locus_item.cpp -o locus_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/i/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp:300:63: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] 300 | if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp:301:28: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] 301 | if (this_start < (15 + last_stop) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ nclude/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/primary_item.cpp -o primary_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/reference_item.cpp -o reference_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/segment_item.cpp -o segment_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp -o source_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_GatherInfoIdx(ncbi::objects::CBioseqContext&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp:183:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 183 | for (int i = 0; i < sizeof (legal_organelles) / sizeof (const char*); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/source_item.cpp:388:21: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CBioSource_Base::TGenome' {aka 'int'} and 'const unsigned int' [-Wsign-compare] 388 | if ( genome >= s_organelle_prefix_size ) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp: In member function 'virtual void ncbi::objects::CFlatSeqIdQVal::Format(ncbi::objects::TFlatQuals&, const ncbi::CTempString&, ncbi::objects::CBioseqContext&, ncbi::objects::IFlatQVal::TFlags) const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp:1105:10: warning: unused variable 'bHtml' [-Wunused-variable] 1105 | bool bHtml = ctx.Config().DoHTML(); | ^~~~~ /ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/version_item.cpp -o version_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/context.cpp -o context.o /home/pbulk/build/biology/ncbi-blast+/work/.c/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp:970:13: warning: 'bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)' defined but not used [-Wunused-function] 970 | static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) | ^~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_submit&, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:536:17: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 536 | Generate(entry, item_os); | ~~~~~~~~^~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here 197 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CBioseq&, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:548:13: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 548 | Generate(entry, item_os); | ~~~~~~~~^~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here 197 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:574:13: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 574 | Generate(entry, item_os); | ~~~~~~~~^~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here 197 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CFlatItemOStream&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:583:13: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 583 | Generate(entry, item_os); | ~~~~~~~~^~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here 197 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_id&, const TRange&, ncbi::objects::ENa_strand, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:604:17: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 604 | Generate(*loc, scope, item_os); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:552:6: note: declared here 552 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_submit&, ncbi::objects::CScope&, ncbi::CNcbiOstream&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:1003:13: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_submit&, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 1003 | Generate(submit, scope, *item_os); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:509:6: note: declared here 509 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CBioseq&, ncbi::objects::CScope&, ncbi::CNcbiOstream&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:1017:13: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 1017 | Generate(entry, *item_os); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here 197 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::CNcbiOstream&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:1028:13: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 1028 | Generate(entry, *item_os); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here 197 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CBioseq_Handle&, ncbi::CNcbiOstream&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:1040:13: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 1040 | Generate(entry, *item_os); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:197:6: note: declared here 197 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope&, ncbi::CNcbiOstream&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:1052:13: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 1052 | Generate(loc, scope, *item_os); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:552:6: note: declared here 552 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_id&, const TRange&, ncbi::objects::ENa_strand, ncbi::objects::CScope&, ncbi::CNcbiOstream&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:1066:13: warning: 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_id&, const TRange&, ncbi::objects::ENa_strand, ncbi::objects::CScope&, ncbi::objects::CFlatItemOStream&)' is deprecated [-Wdeprecated-declarations] 1066 | Generate(id, range, strand, scope, *item_os); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp:587:6: note: declared here 587 | void CFlatFileGenerator::Generate | ^~~~~~~~~~~~~~~~~~ wrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_items.cpp -o gather_items.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp: In member function 'virtual void ncbi::objects::CGenbankFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp:1990:18: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] 1990 | } catch (CSeqVectorException) { | ^~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp:2031:26: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] 2031 | } catch (CSeqVectorException) { | ^~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp: At global scope: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp:285:15: warning: 'std::string ncbi::objects::s_get_anchor_html(const string&, ncbi::TGi)' defined but not used [-Wunused-function] 285 | static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) | ^~~~~~~~~~~~~~~~~ I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/origin_item.cpp -o origin_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxformat.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxformat.a /bin/ln -f .xformat.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xformat.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/format' /bin/make -C validator -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/validator' /bin/make -C asniotest -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/asniotest' /bin/make -C align -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align' /bin/make -C seqmasks_io -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test/Makefile make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqmasks_io.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqmasks_io.a /bin/ln -f .seqmasks_io.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqmasks_io.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /bin/make -C unit_test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /bin/make -C align_format -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format TMPL=align_format -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format TMPL=align_format -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format TMPL=align_format -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/aln_printer.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/taxFormat.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/tabular.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showdefline.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/align_format_util.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/format_flags.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp: In member function 'void ncbi::align_format::CDisplaySeqalign::DisplaySeqalign(ncbi::CNcbiOstream&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp:2104:33: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] 2104 | } catch (CException e){ | ^ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp: In member function 'void ncbi::align_format::CVecscreen::x_MergeSeqalign(ncbi::objects::CSeq_align_set&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp:448:35: warning: unused variable 'da' [-Wunused-variable] 448 | const CSeq_align& da = *x_OrigAlignsById[*di]; | ^~ FORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.a .libalign_format.a.stamp ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libalign_format.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libalign_format.a /bin/ln -f .align_format.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.align_format.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /bin/make -C unit_test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' make[4]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'mark-as-disabled_r'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/align_format' /bin/make -C snputil -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/snputil' /bin/make -C uudutil -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/uudutil' /bin/make -C variation -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/variation' /bin/make -C writers -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/writers' /bin/make -C import -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/import' /bin/make -C flatfile -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/flatfile' make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' /bin/make -C ctools -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/ctools' /bin/make -C sra -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project sra due to unmet requirements: VDB make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -C readers -w -j2 --jobserver-auth=11,12 mark-as-disabled_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -C sra -w -j2 --jobserver-auth=13,14 mark-as-disabled_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sra/readers/sra TMPL=sraread -w -j2 --jobserver-auth=15,16 mark-as-disabled make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sra/readers/sra TMPL=srareadx -w -j2 --jobserver-auth=15,16 mark-as-disabled make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/sra' /bin/make -C bam -w -j2 --jobserver-auth=13,14 mark-as-disabled_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sra/readers/bam TMPL=bamread -w -j2 --jobserver-auth=15,16 mark-as-disabled make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers/bam' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/readers' /bin/make -C data_loaders -w -j2 --jobserver-auth=11,12 mark-as-disabled_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -C sra -w -j2 --jobserver-auth=13,14 mark-as-disabled_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' NOTE: skipping project "ncbi_xloader_sra" due to unmet requirements make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' /bin/make -C test -w -j2 --jobserver-auth=15,16 mark-as-disabled_r || exit 5 make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra/test' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/sra' /bin/make -C bam -w -j2 --jobserver-auth=13,14 mark-as-disabled_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' NOTE: skipping project "ncbi_xloader_bam" due to unmet requirements make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' /bin/make -C test -w -j2 --jobserver-auth=15,16 mark-as-disabled_r || exit 5 make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam/test' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/bam' /bin/make -C csra -w -j2 --jobserver-auth=13,14 mark-as-disabled_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' NOTE: skipping project "ncbi_xloader_csra" due to unmet requirements make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' /bin/make -C test -w -j2 --jobserver-auth=15,16 mark-as-disabled_r || exit 5 make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra/test' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/csra' /bin/make -C wgs -w -j2 --jobserver-auth=13,14 mark-as-disabled_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' NOTE: skipping project "ncbi_xloader_wgs" due to unmet requirements make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' /bin/make -C vdbgraph -w -j2 --jobserver-auth=13,14 mark-as-disabled_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' NOTE: skipping project "ncbi_xloader_vdbgraph" due to unmet requirements make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' /bin/make -C test -w -j2 --jobserver-auth=15,16 mark-as-disabled_r || exit 5 make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph/test' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' /bin/make -C snp -w -j2 --jobserver-auth=13,14 mark-as-disabled_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' NOTE: skipping project "ncbi_xloader_snp" due to unmet requirements make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' /bin/make -C test -w -j2 --jobserver-auth=15,16 mark-as-disabled_r || exit 5 make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp/test' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders/snp' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra/data_loaders' /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sra' /bin/make -C algo -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/sequence/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/align/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/sequence/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/sequence/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/align/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/align/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/structure/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/gnomon/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/structure/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/structure/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/tree/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/gnomon/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/gnomon/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/tree/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/tree/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/phy_tree/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/seqqa/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/phy_tree/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/phy_tree/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/seqqa/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/seqqa/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/cobalt/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/text/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/cobalt/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/cobalt/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/text/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/text/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/volume_merge/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/primer/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/primer/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/primer/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/volume_merge/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/volume_merge/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/id_mapper/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/id_mapper/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/id_mapper/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT sequence/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT align/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/align/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/sequence/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT structure/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gnomon/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/structure/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/gnomon/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT tree/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT phy_tree/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/phy_tree/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/tree/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT seqqa/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cobalt/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/seqqa/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/cobalt/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT text/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT volume_merge/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/volume_merge/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/text/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT primer/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT id_mapper/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/primer/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/id_mapper/Makefile /bin/make -C dustmask -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask/symdust.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp ar cr libxalgodustmask.a symdust.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgodustmask.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgodustmask.a /bin/ln -f .xalgodustmask.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgodustmask.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/dustmask' /bin/make -C winmask -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_config.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_util.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERN/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp:130:39: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] 130 | string id_str = sequence::GetTitle( bsh ); | ~~~~~~~~~~~~~~~~~~^~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:290:8: note: declared here 290 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); | ^~~~~~~~ AL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgowinmask.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgowinmask.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/winmask' /bin/make -C sequence -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/sequence' /bin/make -C blast -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT dbindex_search/Makefile test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT blast_sra_input/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gumbel_params/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params/Makefile /bin/make -C composition_adjustment -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] 137 | s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) | ^~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] 200 | s_DistinctAlignmentsLength(BlastCompo_Alignment * list) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] 185 | s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) | ^~~~~~~~~~~~~~~~~~~~~ c -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libcomposition_adjustment.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcomposition_adjustment.a /bin/ln -f .composition_adjustment.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.composition_adjustment.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /bin/make -C core -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core TMPL=blast -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core TMPL=blast -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core TMPL=blast -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/spliced_hits.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_mapper.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/jumper.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/boost_erf.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/index_ungapped.c. 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Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_itree.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hspstream.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hits.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_gapalign.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_filter.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_extend.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_engine.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_diagnostics.c. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/aa_ungapped.c. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /home/pbulk/build/bio/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c: In function 'Blast_RedoAlignmentCore_MT': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c:3431:11: warning: unused variable 'my_stderr' [-Wunused-variable] 3431 | FILE *my_stderr = stderr; | ^~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c:3004:27: warning: unused variable 'forbidden' [-Wunused-variable] 3004 | Blast_ForbiddenRanges forbidden = {0,}; | ^~~~~~~~~ logy/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_message.c -o blast_message.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_options.c -o blast_options.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/s/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_util.c: In function 'BlastProgram2Number': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_util.c:306:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 306 | else if (strcasecmp("mapper", program) == 0) | ^~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_util.c:309:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 309 | return 0; | ^~~~~~ rc/algo/blast/core/blast_seg.c -o blast_seg.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_util.c -o blast_util.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/ncbi_std.c -o ncbi_std.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/pattern.c -o pattern.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_program.c -o blast_program.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/split_query.c -o split_query.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/jumper.c -o jumper.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o /bin/rm -f libblast.a .libblast.a.stamp ar cr libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblast.a /bin/ln -f .blast.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blast.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/core' /bin/make -C dbindex -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 52 | objects::CFastaReader::fAllSeqIds; | ^~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 52 | objects::CFastaReader::fAllSeqIds; | ^~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] 306 | unsigned long tmp; | ^~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:47: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] 658 | string idstr = objects::sequence::GetTitle( bsh ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/util/sequence.hpp:290:8: note: declared here 290 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); | ^~~~~~~~ make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgoblastdbindex.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgoblastdbindex.a /bin/ln -f .xalgoblastdbindex.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgoblastdbindex.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /bin/make -C makeindex -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j2 --jobserver-auth=15,16 flag-stamps make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j2 --jobserver-auth=15,16 all make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 main.o mkindex_app.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o makembindex strip makembindex /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f makembindex /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/makembindex make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /bin/make -C dbindex_search -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' /bin/make -C api -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api TMPL=xblast -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api TMPL=xblast -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api TMPL=xblast -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_usage_report.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_node.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/magicblast_options.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/deltablast_options.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seedtop.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/winmask_filter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_blk.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_dbindex.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/objmgr_query_data.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/query_data.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_search.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_results.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_search.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/uniform_search.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/traceback_stage.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/prelim_stage.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/setup_factory.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/search_strategy.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rps_aux.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/dust_filter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/version.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_advprot_options.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux_priv.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psi_pssm_input.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_iteration.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_impl.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_db_adapter.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psibl2seq.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_mtlock.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bl2seq.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_blast.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/pssm_engine.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastn_options.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastx_options.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastx_options.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_options.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux.cpp. echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c Updating dependency information for .core_spliced_hits.c. Updating dependency information for .core_hspfilter_mapper.c. Updating dependency information for .core_jumper.c. Updating dependency information for .core_boost_erf.c. Updating dependency information for .core_blast_hspstream_mt_utils.c. Updating dependency information for .core_blast_traceback_mt_priv.c. Updating dependency information for .core_index_ungapped.c. Updating dependency information for .core_gencode_singleton.c. Updating dependency information for .core_split_query.c. Updating dependency information for .core_blast_dynarray.c. Updating dependency information for .core_blast_sw.c. Updating dependency information for .core_blast_tune.c. Updating dependency information for .core_blast_query_info.c. Updating dependency information for .core_blast_program.c. Updating dependency information for .core_blast_posit.c. Updating dependency information for .core_blast_parameters.c. Updating dependency information for .core_phi_lookup.c. Updating dependency information for .core_phi_gapalign.c. Updating dependency information for .core_phi_extend.c. Updating dependency information for .core_pattern.c. Updating dependency information for .core_blast_encoding.c. Updating dependency information for .core_ncbi_math.c. Updating dependency information for .core_ncbi_std.c. Updating dependency information for .core_matrix_freq_ratios.c. Updating dependency information for .core_lookup_wrap.c. Updating dependency information for .core_lookup_util.c. Updating dependency information for .core_link_hsps.c. Updating dependency information for .core_hspfilter_culling.c. Updating dependency information for .core_hspfilter_besthit.c. Updating dependency information for .core_hspfilter_collector.c. Updating dependency information for .core_greedy_align.c. Updating dependency information for .core_gapinfo.c. Updating dependency information for .core_blast_util.c. Updating dependency information for .core_blast_traceback.c. Updating dependency information for .core_blast_stat.c. Updating dependency information for .core_blast_setup.c. Updating dependency information for .core_blast_seqsrc.c. Updating dependency information for .core_blast_seg.c. Updating dependency information for .core_blast_psi_priv.c. Updating dependency information for .core_na_ungapped.c. Updating dependency information for .core_blast_psi.c. Updating dependency information for .core_blast_options.c. Updating dependency information for .core_blast_message.c. Updating dependency information for .core_blast_nascan.c. Updating dependency information for .core_blast_nalookup.c. Updating dependency information for .core_blast_aascan.c. Updating dependency information for .core_blast_aalookup.c. Updating dependency information for .core_blast_lookup.c. Updating dependency information for .core_blast_kappa.c. Updating dependency information for .core_blast_itree.c. Updating dependency information for .core_blast_hspstream.c. Updating dependency information for .core_blast_hits.c. Updating dependency information for .core_blast_gapalign.c. Updating dependency information for .core_blast_filter.c. Updating dependency information for .core_blast_extend.c. Updating dependency information for .core_blast_engine.c. Updating dependency information for .core_blast_diagnostics.c. Updating dependency information for .core_aa_ungapped.c. rm .core_blast_dynarray.c .core_blast_util.c .core_boost_erf.c .core_blast_posit.c .core_hspfilter_mapper.c .core_blast_itree.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_math.c .core_ncbi_std.c .core_blast_traceback.c .core_blast_stat.c .core_blast_seqsrc.c .core_blast_setup.c .core_index_ungapped.c .core_link_hsps.c .core_blast_engine.c .core_pattern.c .core_blast_filter.c .core_greedy_align.c .core_lookup_wrap.c .core_lookup_util.c .core_hspfilter_besthit.c .core_gencode_singleton.c .core_gapinfo.c .core_spliced_hits.c .core_blast_psi.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_blast_traceback_mt_priv.c .core_aa_ungapped.c .core_blast_hspstream_mt_utils.c .core_blast_aascan.c .core_blast_lookup.c .core_blast_diagnostics.c .core_phi_lookup.c .core_blast_nascan.c .core_blast_hspstream.c .core_blast_query_info.c .core_blast_gapalign.c .core_na_ungapped.c .core_blast_seg.c .core_phi_extend.c .core_blast_nalookup.c .core_split_query.c .core_blast_sw.c .core_blast_encoding.c .core_blast_tune.c .core_blast_psi_priv.c .core_jumper.c .core_blast_options.c .core_blast_aalookup.c .core_blast_extend.c .core_phi_gapalign.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c echo '#include "/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:100:35: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] 100 | return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:106:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] 106 | m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); | ^~~~~~~~~~~~~~~ D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blas/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp: In member function 'bool ncbi::blast::CRemoteBlast::LoadFromArchive()': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp:1660:19: warning: ignoring return value of 'bool std::vector<_Tp, _Alloc>::empty() const [with _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]', declared with attribute 'nodiscard' [-Wunused-result] 1660 | m_Errs.empty(); | ~~~~~~~~~~~~^~ In file included from /usr/include/c++/11/vector:67, from /usr/include/c++/11/functional:62, from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/include/c++/11/algorithm:74, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistl.hpp:180, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_limits.hpp:61, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbitime.hpp:65, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:36, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp:35: /usr/include/c++/11/bits/stl_vector.h:1007:7: note: declared here 1007 | empty() const _GLIBCXX_NOEXCEPT | ^~~~~ t+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/b/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ReadAsciiMsa(ncbi::CNcbiIstream&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:125:20: warning: 'void ncbi::CAlnReader::Read(bool, bool, ncbi::objects::ILineErrorListener*)' is deprecated [-Wdeprecated-declarations] 125 | reader.Read(false, true); | ~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:42: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/readers/aln_reader.hpp:215:10: note: declared here 215 | void Read( | ^~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison of integer expressions of different signedness: 'int' and 'Uint4' {aka 'unsigned int'} [-Wsign-compare] 376 | while (k < m_Msa->dimensions->query_length && | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ uild/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp -o blastp_kmer_options.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/version.cpp -o version.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc 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/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include 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-I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_engine.c -o .core_blast_engine.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_extend.c -o .core_blast_extend.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_filter.c -o .core_blast_filter.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_gapalign.c -o .core_blast_gapalign.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_hits.c -o .core_blast_hits.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_hspstream.c -o .core_blast_hspstream.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_itree.c -o .core_blast_itree.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_In file included from .core_blast_kappa.c:1: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c: In function 'Blast_RedoAlignmentCore_MT': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3431:11: warning: unused variable 'my_stderr' [-Wunused-variable] 3431 | FILE *my_stderr = stderr; | ^~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3004:27: warning: unused variable 'forbidden' [-Wunused-variable] 3004 | Blast_ForbiddenRanges forbidden = {0,}; | ^~~~~~~~~ MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_kappa.c -o .core_blast_kappa.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_lookup.c -o .core_blast_lookup.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_aalookup.c -o .core_blast_aalookup.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_aascan.c -o .core_blast_aascan.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_nalookup.c -o .core_blast_nalookup.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_nascan.c -o .core_blast_nascan.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_message.c -o .core_blast_message.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_options.c -o .core_blast_options.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_psi.c -o .core_blast_psi.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_na_ungapped.c -o .core_na_ungapped.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_psi_priv.c -o .core_blast_psi_priv.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biologyIn file included from .core_blast_util.c:1: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c: In function 'BlastProgram2Number': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c:306:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 306 | else if (strcasecmp("mapper", program) == 0) | ^~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/api/../core/blast_util.c:309:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 309 | return 0; | ^~~~~~ /ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_seg.c -o .core_blast_seg.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_seqsrc.c -o .core_blast_seqsrc.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_setup.c -o .core_blast_setup.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall 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.core_blast_posit.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_program.c -o .core_blast_program.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_query_info.c -o .core_blast_query_info.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_tune.c -o .core_blast_tune.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_sw.c -o .core_blast_sw.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_dynarray.c -o .core_blast_dynarray.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_split_query.c -o .core_split_query.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_gencode_singleton.c -o .core_gencode_singleton.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_index_ungapped.c -o .core_index_ungapped.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_traceback_mt_priv.c -o .core_blast_traceback_mt_priv.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_blast_hspstream_mt_utils.c -o .core_blast_hspstream_mt_utils.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_boost_erf.c -o .core_boost_erf.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_jumper.c -o .core_jumper.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_hspfilter_mapper.c -o .core_hspfilter_mapper.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 .core_spliced_hits.c -o .core_spliced_hits.o /bin/rm -f libxblast.a .libxblast.a.stamp ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o blast_node.o blast_usage_report.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblast.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxblast.a /bin/ln -f .xblast.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xblast.dep rm .core_blast_dynarray.c .core_boost_erf.c .core_blast_itree.c .core_ncbi_math.c .core_blast_seqsrc.c .core_index_ungapped.c .core_blast_engine.c .core_spliced_hits.c .core_gencode_singleton.c .core_lookup_wrap.c .core_hspfilter_besthit.c .core_gapinfo.c .core_blast_psi.c .core_blast_filter.c .core_blast_hspstream_mt_utils.c .core_blast_lookup.c .core_blast_diagnostics.c .core_blast_nascan.c .core_blast_hspstream.c .core_na_ungapped.c .core_phi_extend.c .core_jumper.c .core_blast_encoding.c .core_blast_psi_priv.c .core_blast_nalookup.c .core_blast_util.c .core_blast_aalookup.c .core_hspfilter_mapper.c .core_blast_posit.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_std.c .core_blast_traceback.c .core_blast_stat.c .core_blast_setup.c .core_link_hsps.c .core_pattern.c .core_greedy_align.c .core_lookup_util.c .core_blast_hits.c .core_blast_kappa.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_blast_message.c .core_hspfilter_collector.c .core_blast_traceback_mt_priv.c .core_aa_ungapped.c .core_blast_aascan.c .core_phi_lookup.c .core_blast_query_info.c .core_blast_seg.c .core_blast_gapalign.c .core_split_query.c .core_blast_sw.c .core_blast_tune.c .core_blast_options.c .core_blast_extend.c .core_phi_gapalign.c make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/api' /bin/make -C proteinkmer -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp: In function 'void ncbi::neighbor_query(const std::vector >&, const uint64_t*, std::vector >&, ncbi::blast::CMinHashFile&, int, int, double, ncbi::TBlastKmerPrelimScoreVector&, ncbi::BlastKmerStats&, int)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:806:38: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 806 | if (last_oid == *i) | ~~~~~~~~~^~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp: In member function 'void ncbi::blast::CMinHashFile::GetMinHits(int, int&, std::vector&) const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:25: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 77 | if (hits.size() < numHashes) | ~~~~~~~~~~~~^~~~~~~~~~~ +/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o /bin/rm -f libproteinkmer.a .libproteinkmer.a.stamp ar cr libproteinkmer.a blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libproteinkmer.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libproteinkmer.a /bin/ln -f .proteinkmer.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.proteinkmer.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /bin/make -C unit_test -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /bin/make -C format -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format TMPL=xblastformat -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format TMPL=xblastformat -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format TMPL=xblastformat -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:102: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] 501 | unique_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); | ^ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:42, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/tempstr.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:39, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/object_manager.hpp:45, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); | ^~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' 1209 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED | ^~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function 'bool ncbi::s_SerializeAndSplitBy(const ncbi::CSerialObject&, const char*, std::string&, std::string&, bool, bool)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:98: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] 785 | unique_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); | ^ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:42, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/tempstr.hpp:38, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistr.hpp:39, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbistd.hpp:37, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objmgr/object_manager.hpp:45, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); | ^~~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' 1209 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED | ^~~~ make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/sam.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/build_archive.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pIn file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:49: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:38: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:37: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:51: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] 140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp:37: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:38: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:42, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] 140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:42, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ thread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEF/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp: In member function 'virtual void* CBlastAsyncFormatThread::Main()': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp:122:49: warning: comparison of integer expressions of different signedness: 'std::map >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 122 | if (m_ResultsMap.size() != currNum) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/sam.cpp -o sam.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o /bin/rm -f libxblastformat.a .libxblastformat.a.stamp ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblastformat.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxblastformat.a /bin/ln -f .xblastformat.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xblastformat.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/format' /bin/make -C blastinput -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo/Makefile make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp: In constructor 'ncbi::blast::CIgBlastpAppArgs::CIgBlastpAppArgs()': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:67:16: warning: unused variable 'kFilterByDefault' [-Wunused-variable] 67 | const bool kFilterByDefault = false; | ^~~~~~~~~~~~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp: In member function 'virtual void ncbi::blast::CMapperMTArgs::ExtractAlgorithmOptions(const ncbi::CArgs&, ncbi::blast::CBlastOptions&)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:59: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] 205 | const int kMaxValue = static_cast(GetCpuCount()); | ~~~~~~~~~~~^~ In file included from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbifile.hpp:53, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_aux.hpp:39, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here 479 | unsigned int GetCpuCount(void) | ^~~~~~~~~~~ /ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.a .libblastinput.a.stamp ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastinput.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastinput.a /bin/ln -f .blastinput.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastinput.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /bin/make -C unit_test -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' make[5]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' /bin/make -C demo -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /bin/make -C blast_sra_input -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' /bin/make -C igblast -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast TMPL=igblast -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast TMPL=igblast -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast TMPL=igblast -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast/igblast.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.a .libigblast.a.stamp ar cr libigblast.a igblast.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libigblast.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libigblast.a /bin/ln -f .igblast.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.igblast.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /bin/make -C gumbel_params -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' /bin/make -C vdb -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project vdb due to unmet requirements: VDB make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/vdb TMPL=vdb2blast -w -j2 --jobserver-auth=15,16 mark-as-disabled make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/vdb' /bin/make -C unit_tests -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -C blast_format -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' make[5]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project blast_format due to unmet requirements: Boost.Test.Included make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' /bin/make -C blastdb -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' make[5]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project blastdb due to unmet requirements: Boost.Test.Included make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' /bin/make -C seqdb_reader -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' make[5]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project seqdb_reader due to unmet requirements: Boost.Test.Included make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' /bin/make -C api -w -j2 --jobserver-auth=13,14 all_r || exit 5 make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' make[5]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project api due to unmet requirements: Boost.Test.Included make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[7]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' make[7]: warning: -j2 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' make[7]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' make[7]: warning: -j2 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j2 --jobserver-auth=17,18 mark-as-disabled make[7]: warning: -j2 forced in submake: resetting jobserver mode. make[7]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' make[7]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' make[7]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' make[7]: warning: -j2 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' make[7]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' make[7]: warning: -j2 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j2 --jobserver-auth=17,18 mark-as-disabled make[7]: warning: -j2 forced in submake: resetting jobserver mode. make[7]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' make[7]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/blast' /bin/make -C segmask -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -w -j2 --jobserver-auth=11,12 export-headers make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask/segmask.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.a .libxalgosegmask.a.stamp ar cr libxalgosegmask.a segmask.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgosegmask.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxalgosegmask.a /bin/ln -f .xalgosegmask.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xalgosegmask.dep make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/segmask' /bin/make -C align -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/align' /bin/make -C structure -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/structure' /bin/make -C gnomon -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/gnomon' /bin/make -C tree -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/tree' /bin/make -C phy_tree -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/phy_tree' /bin/make -C seqqa -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/seqqa' /bin/make -C cobalt -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/cobalt' /bin/make -C text -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/text' /bin/make -C volume_merge -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/volume_merge' /bin/make -C primer -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/primer' /bin/make -C id_mapper -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo/id_mapper' make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/algo' /bin/make -C misc -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/clog/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/grid_cgi/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/grid_cgi/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/grid_cgi/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/clog/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/clog/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlwrapp/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/eutils_client/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlwrapp/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlwrapp/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/eutils_client/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/eutils_client/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hydra_client/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/discrepancy/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hydra_client/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hydra_client/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/discrepancy/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/discrepancy/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlreaders/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hgvs/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlreaders/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/xmlreaders/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hgvs/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/hgvs/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/netstorage/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/biosample_util/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/netstorage/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/netstorage/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/biosample_util/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/biosample_util/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/data_loaders_util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/lapackwrapp/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/data_loaders_util/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/data_loaders_util/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/lapackwrapp/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/lapackwrapp/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/pmcidconv_client/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/cgi_redirect/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/pmcidconv_client/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/pmcidconv_client/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT clog/Makefile test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/cgi_redirect/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/misc/cgi_redirect/Makefile.in /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT grid_cgi/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/clog/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/grid_cgi/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT xmlwrapp/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT eutils_client/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/eutils_client/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlwrapp/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT hydra_client/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT discrepancy/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/discrepancy/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hydra_client/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT xmlreaders/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT hgvs/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlreaders/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hgvs/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT netstorage/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT biosample_util/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/netstorage/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/biosample_util/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT data_loaders_util/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lapackwrapp/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/data_loaders_util/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/lapackwrapp/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pmcidconv_client/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cgi_redirect/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/cgi_redirect/Makefile /bin/make -C third_party -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party' /bin/make -C third_party_static -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' make[3]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project third_party_static due to unmet requirements: -DLL make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'mark-as-disabled_r'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/third_party_static' /bin/make -C clog -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/clog' /bin/make -C grid_cgi -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/grid_cgi' /bin/make -C xmlwrapp -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlwrapp' /bin/make -C eutils_client -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/eutils_client' /bin/make -C hydra_client -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hydra_client' /bin/make -C discrepancy -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/discrepancy' /bin/make -C xmlreaders -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/xmlreaders' /bin/make -C hgvs -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/hgvs' /bin/make -C netstorage -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/netstorage' /bin/make -C jsonwrapp -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' make[3]: warning: -j2 forced in submake: resetting jobserver mode. /bin/make -C test -w -j2 --jobserver-auth=11,12 all_r || exit 5 make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp" due to unmet requirements make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: *** No rule to make target '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp" due to unmet requirements make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/jsonwrapp' /bin/make -C biosample_util -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/biosample_util' /bin/make -C data_loaders_util -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/data_loaders_util' /bin/make -C lapackwrapp -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/lapackwrapp' /bin/make -C pmcidconv_client -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client' NCBI_BUT_EXPENDABLE=' (but expendable)' /bin/make -C cgi_redirect -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc/cgi_redirect' make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/misc' /bin/make -C gui -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/gui' /bin/make -C app -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2asn/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2fasta/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2fasta/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2fasta/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2asn/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2asn/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2flat/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/flat2asn/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2flat/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn2flat/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/flat2asn/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/flat2asn/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asnval/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn_cleanup/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asnval/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asnval/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/id1_fetch/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn_cleanup/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/asn_cleanup/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/convert_seq/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/id1_fetch/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/id1_fetch/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/convert_seq/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/convert_seq/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/nmer_repeats/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/objmgr/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/nmer_repeats/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/nmer_repeats/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/gi2taxid/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/objmgr/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/objmgr/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/gi2taxid/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/gi2taxid/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netschedule/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/grid/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netschedule/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netschedule/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netstorage/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/grid/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/grid/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/igblast/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netstorage/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/netstorage/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/igblast/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/igblast/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/vecscreen/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/vecscreen/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/vecscreen/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/agpconvert/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/id2_fetch/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/id2_fetch/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/id2_fetch/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/agpconvert/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/agpconvert/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/agp_validate/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/objextract/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/agp_validate/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/agp_validate/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/objextract/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/objextract/Makefile.in /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/bdb_env_keeper/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/nw_aligner/Makefile.in` test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/bdb_env_keeper/Makefile.in || /bin/cp -p /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/bdb_env_keeper/Makefile.in test -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/nw_aligner/Makefile.in || /bin/cp -p 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/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT dblb/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT tls/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dblb/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT idfetch/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tls/Makefile /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT pubseq_gateway/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idfetch/Makefile config.status: creating /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pubseq_gateway/Makefile /bin/make -C asn2asn -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2asn' /bin/make -C asn2fasta -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2fasta' /bin/make -C asn2flat -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn2flat' /bin/make -C flat2asn -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/flat2asn' /bin/make -C asnval -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asnval' /bin/make -C asn_cleanup -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn_cleanup' /bin/make -C id1_fetch -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/id1_fetch' /bin/make -C blast -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast -w -j2 --jobserver-auth=15,16 all make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/legacy_blast.pl /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/legacy_blast.pl /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/legacy_blast.pl make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast -w -j2 --jobserver-auth=15,16 all make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/update_blastdb.pl /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/update_blastdb.pl /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/update_blastdb.pl make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.get_species_taxids builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast -w -j2 --jobserver-auth=15,16 all make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/get_species_taxids.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/get_species_taxids.sh /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/get_species_taxids.sh make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/Makefile.cleanup-blastdb-volumes builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast -w -j2 --jobserver-auth=15,16 all make[6]: warning: -j2 forced in submake: resetting jobserver mode. make[6]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/cleanup-blastdb-volumes.py make[6]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_app_util -w -j2 --jobserver-auth=13,14 export-headers make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_app_util -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastp -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastn -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastx -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastn -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastx -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=psiblast -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpsblast -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpstblastn -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_formatter -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_report -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=deltablast -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=seedtop -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_app_util -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_app_util.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast_app_util.a /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blast_app_util.dep make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastp -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_app.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_node.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastp -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_node.cpp -o blastp_node.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastp -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 blastp_node.o blastp_app.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o blastp strip blastp /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastp /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastp make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastn -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_app.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_node.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastn -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_node.cpp -o blastn_node.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastn -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 blastn_node.o blastn_app.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lxformat-static -lxcleanup-static -lvalid-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lsubmit-static -lxregexp-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o blastn strip blastn /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastn make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blastx -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_app.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_node.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastx -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_node.cpp -o blastx_node.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastx -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 blastx_node.o blastx_app.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o blastx strip blastx /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastx /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastx make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastn -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_app.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_node.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_node.cpp -o tblastn_node.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 tblastn_node.o tblastn_app.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o tblastn strip tblastn /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f tblastn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/tblastn make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=tblastx -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastx_app.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=tblastx -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 tblastx_app.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o tblastx strip tblastx /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f tblastx /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/tblastx make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=psiblast -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/psiblast_app.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=psiblast -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 psiblast_app.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o psiblast strip psiblast /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f psiblast /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/psiblast make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpsblast -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_app.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_node.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 rpsblast_node.o rpsblast_app.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o rpsblast strip rpsblast /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f rpsblast /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/rpsblast make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=rpstblastn -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_app.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_node.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_node.cpp -o rpstblastn_node.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 rpstblastn_node.o rpstblastn_app.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o rpstblastn strip rpstblastn /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f rpstblastn /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/rpstblastn make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_formatter -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_formatter.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blast_formatter -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 blast_formatter.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o blast_formatter strip blast_formatter /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blast_formatter /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blast_formatter make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=blast_report -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_report.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blast_report -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/blast_report.cpp -o blast_report.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 blast_report.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o blast_report strip blast_report /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_report /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blast_report /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blast_report make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=deltablast -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/deltablast_app.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=deltablast -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 deltablast_app.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o deltablast strip deltablast /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f deltablast /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/deltablast make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast TMPL=seedtop -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/seedtop_app.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seedtop -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 seedtop_app.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o seedtop strip seedtop /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f seedtop /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seedtop make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blast' /bin/make -C convert_seq -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/convert_seq' /bin/make -C nmer_repeats -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/nmer_repeats' /bin/make -C objmgr -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/objmgr' /bin/make -C gi2taxid -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gi2taxid' /bin/make -C netschedule -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netschedule' /bin/make -C grid -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/grid' /bin/make -C netstorage -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netstorage' /bin/make -C igblast -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/igblast' /bin/make -C winmasker -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/windowmasker_2.2.22_adapter.py make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker TMPL=winmasker -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker TMPL=winmasker -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_app.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/main.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/main.cpp -o main.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o windowmasker strip windowmasker /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f windowmasker /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/windowmasker make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/winmasker' /bin/make -C dustmasker -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker TMPL=dustmasker -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker TMPL=dustmasker -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/dust_mask_app.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/main.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=dustmasker -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/main.cpp -o main.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=dustmasker -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 main.o dust_mask_app.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o dustmasker strip dustmasker /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f dustmasker /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/dustmasker make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dustmasker' /bin/make -C segmasker -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/segmasker TMPL=segmasker -w -j2 --jobserver-auth=11,12 flag-stamps make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/segmasker TMPL=segmasker -w -j2 --jobserver-auth=11,12 all make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/segmasker/segmasker.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=segmasker -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 segmasker.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxobjsimple-static -lxalgosegmask-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o segmasker strip segmasker /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f segmasker /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/segmasker make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/segmasker' /bin/make -C blastdb -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcmd -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeblastdb -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcheck -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=convert2blastmask -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcp -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeprofiledb -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_convert -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_path -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeclusterdb -w -j2 --jobserver-auth=13,14 flag-stamps make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcmd -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcmd.cpp: In member function 'virtual int CBlastDBCmdApp::Run()': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcmd.cpp:1181:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 1181 | if (!output_prefix.empty() && (output_prefix.back() != CFile::GetPathSeparator())) | ^~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcmd.cpp:1183:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 1183 | CRef m = m_BlastDb->GetDBMetaData(output_prefix); | ^~~~ make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcmd.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcmd -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 blastdbcmd.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o blastdbcmd strip blastdbcmd /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcmd /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdbcmd make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeblastdb -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/masked_range_set.cpp. Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeblastdb.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makeblastdb -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makeblastdb -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 makeblastdb.o masked_range_set.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o makeblastdb strip makeblastdb /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f makeblastdb /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/makeblastdb make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_aliastool -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 blastdb_aliastool.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o blastdb_aliastool strip blastdb_aliastool /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_aliastool /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdb_aliastool make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcheck -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcheck.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcheck -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 blastdbcheck.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o blastdbcheck strip blastdbcheck /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcheck /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdbcheck make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=convert2blastmask -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/convert2blastmask.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=convert2blastmask -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 convert2blastmask.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lproteinkmer -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -lpthread -o convert2blastmask strip convert2blastmask /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f convert2blastmask /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/convert2blastmask make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdbcp -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcp.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcp -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 blastdbcp.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxconnext -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o blastdbcp strip blastdbcp /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcp /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdbcp make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeprofiledb -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'void CMakeProfileDBApp::x_InitRPSDbInfo(CMakeProfileDBApp::CRPS_DbInfo&, Int4, Int4)': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeprofiledb.cpp:762:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 762 | if (!rpsDbInfo.aux_file.is_open()) | ^~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeprofiledb.cpp:765:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 765 | string freq_str = rpsDbInfo.db_name + ".freq"; | ^~~~~~ /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'int CMakeProfileDBApp::x_Run()': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeprofiledb.cpp:1386:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1386 | if (m_NumOfVols == m_VolNames.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeprofiledb.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makeprofiledb -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 makeprofiledb.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o makeprofiledb strip makeprofiledb /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f makeprofiledb /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/makeprofiledb make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_convert -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_convert.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_convert -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 blastdb_convert.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o blastdb_convert strip blastdb_convert /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_convert /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdb_convert make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=blastdb_path -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_path.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_path -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/blastdb_path.cpp -o blastdb_path.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 blastdb_path.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o blastdb_path strip blastdb_path /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_path /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_path /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/blastdb_path make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[5]: warning: -j2 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -f /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb TMPL=makeclusterdb -w -j2 --jobserver-auth=13,14 all make[5]: warning: -j2 forced in submake: resetting jobserver mode. /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeclusterdb.cpp: In member function 'void CMakeClusterDBApp::x_BuildDatabase()': /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeclusterdb.cpp:565:10: warning: unused variable 'success' [-Wunused-variable] 565 | bool success = m_DB->EndBuild(); | ^~~~~~~ make[5]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeclusterdb.cpp. /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.12 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=makeclusterdb -DNCBI_BUILD_SESSION_ID=fe7ed3cf-1953-483c-b2db-8f17848a21f5 /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/app/blastdb/makeclusterdb.cpp -o makeclusterdb.o /home/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c++ -std=gnu++17 -msse4.2 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64 -O2 makeclusterdb.o -Wl,-rpath-link,/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -L/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -lpthread -o makeclusterdb strip makeclusterdb /bin/bash /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeclusterdb /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f makeclusterdb /home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/makeclusterdb make[5]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastdb' /bin/make -C blastvdb -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. NOTE: Skipping project blastvdb due to unmet requirements: VDB make[4]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastvdb' make[4]: warning: -j2 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'mark-as-disabled_r'. make[4]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastvdb' make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/blastvdb' /bin/make -C vecscreen -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/vecscreen' /bin/make -C agpconvert -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/agpconvert' /bin/make -C id2_fetch -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/id2_fetch' /bin/make -C agp_validate -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/agp_validate' /bin/make -C objextract -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/objextract' /bin/make -C bdb_env_keeper -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/bdb_env_keeper' /bin/make -C nw_aligner -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/nw_aligner' /bin/make -C speedtest -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/speedtest' /bin/make -C idmapper -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idmapper' /bin/make -C formatguess -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/formatguess' /bin/make -C multireader -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/multireader' /bin/make -C read_blast_result -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/read_blast_result' /bin/make -C splign -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/splign' /bin/make -C hfilter -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/hfilter' /bin/make -C annotwriter -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/annotwriter' /bin/make -C compart -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/compart' /bin/make -C streamtest -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/streamtest' /bin/make -C lds2_indexer -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/lds2_indexer' /bin/make -C discrepancy_report -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/discrepancy_report' /bin/make -C biosample_chk -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/biosample_chk' /bin/make -C bsdiff -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/bsdiff' /bin/make -C gap_stats -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gap_stats' /bin/make -C table2asn -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/table2asn' /bin/make -C srcchk -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/srcchk' /bin/make -C tableval -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tableval' /bin/make -C ncbi_encrypt -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/ncbi_encrypt' /bin/make -C ssub_fork -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/ssub_fork' /bin/make -C asn_cache -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/asn_cache' /bin/make -C magicblast -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/magicblast' /bin/make -C multipattern -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/multipattern' /bin/make -C prt2fsm -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/prt2fsm' /bin/make -C pub_report -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pub_report' /bin/make -C gff_deconcat -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/gff_deconcat' /bin/make -C sub_fuse -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/sub_fuse' /bin/make -C feat_import -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/feat_import' NCBI_BUT_EXPENDABLE=' (but expendable)' /bin/make -C split_cache -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/split_cache' NCBI_BUT_EXPENDABLE=' (but expendable)' /bin/make -C wig2table -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/wig2table' NCBI_BUT_EXPENDABLE=' (but expendable)' /bin/make -C netcache -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/netcache' NCBI_BUT_EXPENDABLE=' (but expendable)' /bin/make -C rmblastn -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/rmblastn' NCBI_BUT_EXPENDABLE=' (but expendable)' /bin/make -C dblb -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/dblb' NCBI_BUT_EXPENDABLE=' (but expendable)' /bin/make -C tls -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/tls' NCBI_BUT_EXPENDABLE=' (but expendable)' /bin/make -C idfetch -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/idfetch' NCBI_BUT_EXPENDABLE=' (but expendable)' /bin/make -C pubseq_gateway -w -j2 --jobserver-auth=9,10 all_r || exit 5 make[3]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' make[3]: warning: -j2 forced in submake: resetting jobserver mode. make[3]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app/pubseq_gateway' make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/app' /bin/make -C sample -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sample' /bin/make -C internal -w -j2 --jobserver-auth=7,8 all_r || exit 5 make[2]: Entering directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' make[2]: warning: -j2 forced in submake: resetting jobserver mode. make[2]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/internal' make[1]: Leaving directory '/home/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build'