+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /usr/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=39 WRKLOG=/tmp/bulklog/py39-dnaio-1.2.0/work.log + su pbulk -c '"$@"' make /usr/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=39 WRKLOG=/tmp/bulklog/py39-dnaio-1.2.0/work.log => Bootstrap dependency digest>=20211023: found digest-20220214 ===> Building for py39-dnaio-1.2.0 * Building wheel... running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-39 creating build/lib.linux-x86_64-cpython-39/dnaio copying src/dnaio/_version.py -> build/lib.linux-x86_64-cpython-39/dnaio copying src/dnaio/readers.py -> build/lib.linux-x86_64-cpython-39/dnaio copying src/dnaio/multipleend.py -> build/lib.linux-x86_64-cpython-39/dnaio copying src/dnaio/writers.py -> build/lib.linux-x86_64-cpython-39/dnaio copying src/dnaio/singleend.py -> build/lib.linux-x86_64-cpython-39/dnaio copying src/dnaio/pairedend.py -> build/lib.linux-x86_64-cpython-39/dnaio copying src/dnaio/interfaces.py -> build/lib.linux-x86_64-cpython-39/dnaio copying src/dnaio/exceptions.py -> build/lib.linux-x86_64-cpython-39/dnaio copying src/dnaio/chunks.py -> build/lib.linux-x86_64-cpython-39/dnaio copying src/dnaio/__init__.py -> build/lib.linux-x86_64-cpython-39/dnaio copying src/dnaio/_util.py -> build/lib.linux-x86_64-cpython-39/dnaio running egg_info writing src/dnaio.egg-info/PKG-INFO writing dependency_links to src/dnaio.egg-info/dependency_links.txt writing requirements to src/dnaio.egg-info/requires.txt writing top-level names to src/dnaio.egg-info/top_level.txt ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any reading manifest file 'src/dnaio.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'src/dnaio.egg-info/SOURCES.txt' copying src/dnaio/_conversions.h -> build/lib.linux-x86_64-cpython-39/dnaio copying src/dnaio/_core.pyi -> build/lib.linux-x86_64-cpython-39/dnaio copying src/dnaio/_version.pyi -> build/lib.linux-x86_64-cpython-39/dnaio copying src/dnaio/ascii_check.h -> build/lib.linux-x86_64-cpython-39/dnaio copying src/dnaio/bam.h -> build/lib.linux-x86_64-cpython-39/dnaio copying src/dnaio/py.typed -> build/lib.linux-x86_64-cpython-39/dnaio running build_ext Compiling src/dnaio/_core.pyx because it changed. [1/1] Cythonizing src/dnaio/_core.pyx building 'dnaio._core' extension creating build/temp.linux-x86_64-cpython-39 creating build/temp.linux-x86_64-cpython-39/src creating build/temp.linux-x86_64-cpython-39/src/dnaio cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -O2 -I/usr/include -I/usr/pkg/include -D_XOPEN_SOURCE_EXTENDED=1 -I/usr/pkg/include/ncurses -I/usr/pkg/include/db4 -pipe -O2 -I/usr/include -I/usr/pkg/include -D_XOPEN_SOURCE_EXTENDED=1 -I/usr/pkg/include/ncurses -I/usr/pkg/include/db4 -pipe -O2 -I/usr/include -I/usr/pkg/include -D_XOPEN_SOURCE_EXTENDED=1 -I/usr/pkg/include/ncurses -I/usr/pkg/include/db4 -pipe -O2 -I/usr/include -I/usr/pkg/include/python3.9 -I/usr/include -I/usr/pkg/include/python3.9 -fPIC -I/usr/pkg/include/python3.9 -c src/dnaio/_core.c -o build/temp.linux-x86_64-cpython-39/src/dnaio/_core.o cc -shared -L. -Wl,-zrelro -L/usr/lib64 -Wl,-R/usr/lib64 -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -Wl,-zrelro -L/usr/lib64 -Wl,-R/usr/lib64 -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -Wl,-zrelro -L/usr/lib64 -Wl,-R/usr/lib64 -Wl,-R/usr/pkg/lib -pipe -O2 -I/usr/include -I/usr/pkg/include/python3.9 -I/usr/include -I/usr/pkg/include/python3.9 build/temp.linux-x86_64-cpython-39/src/dnaio/_core.o -L/usr/pkg/lib -o build/lib.linux-x86_64-cpython-39/dnaio/_core.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/dnaio copying build/lib.linux-x86_64-cpython-39/dnaio/_version.py -> build/bdist.linux-x86_64/wheel/dnaio copying build/lib.linux-x86_64-cpython-39/dnaio/ascii_check.h -> build/bdist.linux-x86_64/wheel/dnaio copying build/lib.linux-x86_64-cpython-39/dnaio/readers.py -> build/bdist.linux-x86_64/wheel/dnaio copying build/lib.linux-x86_64-cpython-39/dnaio/_conversions.h -> build/bdist.linux-x86_64/wheel/dnaio copying build/lib.linux-x86_64-cpython-39/dnaio/multipleend.py -> build/bdist.linux-x86_64/wheel/dnaio copying build/lib.linux-x86_64-cpython-39/dnaio/writers.py -> build/bdist.linux-x86_64/wheel/dnaio copying build/lib.linux-x86_64-cpython-39/dnaio/py.typed -> build/bdist.linux-x86_64/wheel/dnaio copying build/lib.linux-x86_64-cpython-39/dnaio/_core.pyi -> build/bdist.linux-x86_64/wheel/dnaio copying build/lib.linux-x86_64-cpython-39/dnaio/_core.so -> build/bdist.linux-x86_64/wheel/dnaio copying build/lib.linux-x86_64-cpython-39/dnaio/bam.h -> build/bdist.linux-x86_64/wheel/dnaio copying build/lib.linux-x86_64-cpython-39/dnaio/singleend.py -> build/bdist.linux-x86_64/wheel/dnaio copying build/lib.linux-x86_64-cpython-39/dnaio/pairedend.py -> build/bdist.linux-x86_64/wheel/dnaio copying build/lib.linux-x86_64-cpython-39/dnaio/interfaces.py -> build/bdist.linux-x86_64/wheel/dnaio copying build/lib.linux-x86_64-cpython-39/dnaio/exceptions.py -> build/bdist.linux-x86_64/wheel/dnaio copying build/lib.linux-x86_64-cpython-39/dnaio/chunks.py -> build/bdist.linux-x86_64/wheel/dnaio copying build/lib.linux-x86_64-cpython-39/dnaio/__init__.py -> build/bdist.linux-x86_64/wheel/dnaio copying build/lib.linux-x86_64-cpython-39/dnaio/_version.pyi -> build/bdist.linux-x86_64/wheel/dnaio copying build/lib.linux-x86_64-cpython-39/dnaio/_util.py -> build/bdist.linux-x86_64/wheel/dnaio running install_egg_info Copying src/dnaio.egg-info to build/bdist.linux-x86_64/wheel/dnaio-1.2.0-py3.9.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/dnaio-1.2.0.dist-info/WHEEL creating '/home/pbulk/build/biology/py-dnaio/work/dnaio-1.2.0/dist/.tmp-i5d1tha4/dnaio-1.2.0-cp39-cp39-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'dnaio/__init__.py' adding 'dnaio/_conversions.h' adding 'dnaio/_core.pyi' adding 'dnaio/_core.so' adding 'dnaio/_util.py' adding 'dnaio/_version.py' adding 'dnaio/_version.pyi' adding 'dnaio/ascii_check.h' adding 'dnaio/bam.h' adding 'dnaio/chunks.py' adding 'dnaio/exceptions.py' adding 'dnaio/interfaces.py' adding 'dnaio/multipleend.py' adding 'dnaio/pairedend.py' adding 'dnaio/py.typed' adding 'dnaio/readers.py' adding 'dnaio/singleend.py' adding 'dnaio/writers.py' adding 'dnaio-1.2.0.dist-info/LICENSE' adding 'dnaio-1.2.0.dist-info/METADATA' adding 'dnaio-1.2.0.dist-info/WHEEL' adding 'dnaio-1.2.0.dist-info/top_level.txt' adding 'dnaio-1.2.0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built dnaio-1.2.0-cp39-cp39-linux_x86_64.whl