+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /usr/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=310 WRKLOG=/tmp/bulklog/py310-cutadapt-4.7/work.log + su pbulk -c '"$@"' make /usr/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=310 WRKLOG=/tmp/bulklog/py310-cutadapt-4.7/work.log => Bootstrap dependency digest>=20211023: found digest-20220214 ===> Building for py310-cutadapt-4.7 * Building wheel... running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-310 creating build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/modifiers.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/_version.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/align.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/cli.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/steps.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/json.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/pipeline.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/report.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/runners.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/_match_tables.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/log.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/adapters.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/parser.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/kmer_heuristic.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/predicates.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/__main__.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/statistics.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/tokenizer.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/__init__.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/files.py -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/utils.py -> build/lib.linux-x86_64-cpython-310/cutadapt running egg_info writing src/cutadapt.egg-info/PKG-INFO writing dependency_links to src/cutadapt.egg-info/dependency_links.txt writing entry points to src/cutadapt.egg-info/entry_points.txt writing requirements to src/cutadapt.egg-info/requires.txt writing top-level names to src/cutadapt.egg-info/top_level.txt ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any reading manifest file 'src/cutadapt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'CITATION' warning: no files found matching 'src/cutadapt/*.c' adding license file 'LICENSE' writing manifest file 'src/cutadapt.egg-info/SOURCES.txt' copying src/cutadapt/_align.pyi -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/_kmer_finder.pyi -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/info.pyi -> build/lib.linux-x86_64-cpython-310/cutadapt copying src/cutadapt/qualtrim.pyi -> build/lib.linux-x86_64-cpython-310/cutadapt running build_ext Compiling src/cutadapt/_align.pyx because it changed. [1/1] Cythonizing src/cutadapt/_align.pyx building 'cutadapt._align' extension creating build/temp.linux-x86_64-cpython-310 creating build/temp.linux-x86_64-cpython-310/src creating build/temp.linux-x86_64-cpython-310/src/cutadapt cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -O2 -I/usr/include -I/usr/pkg/include -D_XOPEN_SOURCE_EXTENDED=1 -I/usr/pkg/include/ncurses -I/usr/pkg/include/db4 -pipe -O2 -I/usr/include -I/usr/pkg/include -D_XOPEN_SOURCE_EXTENDED=1 -I/usr/pkg/include/ncurses -I/usr/pkg/include/db4 -pipe -O2 -I/usr/include -I/usr/pkg/include -D_XOPEN_SOURCE_EXTENDED=1 -I/usr/pkg/include/ncurses -I/usr/pkg/include/db4 -pipe -O2 -I/usr/include -I/usr/pkg/include/python3.10 -I/usr/include -I/usr/pkg/include/python3.10 -fPIC -I/usr/pkg/include/python3.10 -c src/cutadapt/_align.c -o build/temp.linux-x86_64-cpython-310/src/cutadapt/_align.o cc -shared -L. -Wl,-zrelro -L/usr/lib64 -Wl,-R/usr/lib64 -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -Wl,-zrelro -L/usr/lib64 -Wl,-R/usr/lib64 -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -Wl,-zrelro -L/usr/lib64 -Wl,-R/usr/lib64 -Wl,-R/usr/pkg/lib -pipe -O2 -I/usr/include -I/usr/pkg/include/python3.10 -I/usr/include -I/usr/pkg/include/python3.10 build/temp.linux-x86_64-cpython-310/src/cutadapt/_align.o -L/usr/pkg/lib -o build/lib.linux-x86_64-cpython-310/cutadapt/_align.so Compiling src/cutadapt/qualtrim.pyx because it changed. [1/1] Cythonizing src/cutadapt/qualtrim.pyx building 'cutadapt.qualtrim' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -O2 -I/usr/include -I/usr/pkg/include -D_XOPEN_SOURCE_EXTENDED=1 -I/usr/pkg/include/ncurses -I/usr/pkg/include/db4 -pipe -O2 -I/usr/include -I/usr/pkg/include -D_XOPEN_SOURCE_EXTENDED=1 -I/usr/pkg/include/ncurses -I/usr/pkg/include/db4 -pipe -O2 -I/usr/include -I/usr/pkg/include -D_XOPEN_SOURCE_EXTENDED=1 -I/usr/pkg/include/ncurses -I/usr/pkg/include/db4 -pipe -O2 -I/usr/include -I/usr/pkg/include/python3.10 -I/usr/include -I/usr/pkg/include/python3.10 -fPIC -I/usr/pkg/include/python3.10 -c src/cutadapt/qualtrim.c -o build/temp.linux-x86_64-cpython-310/src/cutadapt/qualtrim.o cc -shared -L. -Wl,-zrelro -L/usr/lib64 -Wl,-R/usr/lib64 -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -Wl,-zrelro -L/usr/lib64 -Wl,-R/usr/lib64 -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -Wl,-zrelro -L/usr/lib64 -Wl,-R/usr/lib64 -Wl,-R/usr/pkg/lib -pipe -O2 -I/usr/include -I/usr/pkg/include/python3.10 -I/usr/include -I/usr/pkg/include/python3.10 build/temp.linux-x86_64-cpython-310/src/cutadapt/qualtrim.o -L/usr/pkg/lib -o build/lib.linux-x86_64-cpython-310/cutadapt/qualtrim.so /usr/pkg/lib/python3.10/site-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /home/pbulk/build/biology/py-cutadapt/work/cutadapt-4.7/src/cutadapt/info.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling src/cutadapt/info.pyx because it changed. [1/1] Cythonizing src/cutadapt/info.pyx building 'cutadapt.info' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -O2 -I/usr/include -I/usr/pkg/include -D_XOPEN_SOURCE_EXTENDED=1 -I/usr/pkg/include/ncurses -I/usr/pkg/include/db4 -pipe -O2 -I/usr/include -I/usr/pkg/include -D_XOPEN_SOURCE_EXTENDED=1 -I/usr/pkg/include/ncurses -I/usr/pkg/include/db4 -pipe -O2 -I/usr/include -I/usr/pkg/include -D_XOPEN_SOURCE_EXTENDED=1 -I/usr/pkg/include/ncurses -I/usr/pkg/include/db4 -pipe -O2 -I/usr/include -I/usr/pkg/include/python3.10 -I/usr/include -I/usr/pkg/include/python3.10 -fPIC -I/usr/pkg/include/python3.10 -c src/cutadapt/info.c -o build/temp.linux-x86_64-cpython-310/src/cutadapt/info.o {standard input}: Assembler messages: {standard input}: Fatal error: can't write 22 bytes to section .text of build/temp.linux-x86_64-cpython-310/src/cutadapt/info.o: 'No space left on device' as: BFD version 2.35.2-42.el9_3.1 assertion fail ../../bfd/elf.c:3170 as: BFD version 2.35.2-42.el9_3.1 assertion fail ../../bfd/elf.c:3170 as: BFD version 2.35.2-42.el9_3.1 assertion fail ../../bfd/elf.c:3170 as: BFD version 2.35.2-42.el9_3.1 assertion fail ../../bfd/elf.c:3170 {standard input}: Fatal error: can't close build/temp.linux-x86_64-cpython-310/src/cutadapt/info.o: No space left on device error: command '/home/pbulk/build/biology/py-cutadapt/work/.cwrapper/bin/cc' failed with exit code 1 ERROR Backend subprocess exited when trying to invoke build_wheel *** Error code 1 Stop. bmake[1]: stopped in /data/jenkins/workspace/pkgsrc-el9-trunk-x86_64/biology/py-cutadapt *** Error code 1 Stop. bmake: stopped in /data/jenkins/workspace/pkgsrc-el9-trunk-x86_64/biology/py-cutadapt