+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /usr/pkg/bin/bmake stage-install BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/libpll-0.3.2/work.log
+ su pbulk -c '"$@"' make /usr/pkg/bin/bmake stage-install BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/libpll-0.3.2/work.log
=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Installing for libpll-0.3.2
=> Generating pre-install file lists
Making install in src
cd .. && /usr/pkg/bin/bmake  am--refresh
/bin/bash ./config.status --recheck
 /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/lib'
 /bin/bash ../libtool   --mode=install /bin/install -c -o pbulk -g pbulk   libpll.la '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/lib'
libtool: install: /bin/install -c -o pbulk -g pbulk .libs/libpll.so.0.0.0 /home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/lib/libpll.so.0.0.0
libtool: install: (cd /home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/lib && { ln -s -f libpll.so.0.0.0 libpll.so.0 || { rm -f libpll.so.0 && ln -s libpll.so.0.0.0 libpll.so.0; }; })
libtool: install: (cd /home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/lib && { ln -s -f libpll.so.0.0.0 libpll.so || { rm -f libpll.so && ln -s libpll.so.0.0.0 libpll.so; }; })
libtool: install: /bin/install -c -o pbulk -g pbulk .libs/libpll.lai /home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/lib/libpll.la
libtool: install: /bin/install -c -o pbulk -g pbulk .libs/libpll.a /home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/lib/libpll.a
libtool: install: chmod 644 /home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/lib/libpll.a
libtool: install: ranlib /home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/lib/libpll.a
libtool: warning: remember to run 'libtool --finish /usr/pkg/lib'
 /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/include/libpll'
 /bin/install -c -o pbulk -g pbulk -m 644 pll.h '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/include/libpll'
Making install in man
cd .. && /usr/pkg/bin/bmake  am--refresh
/bin/bash ./config.status --recheck
 /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/man/man3'
 /bin/install -c -o pbulk -g pbulk -m 644 libpll.3 '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/man/man3'
Making install in examples
cd .. && /usr/pkg/bin/bmake  am--refresh
/bin/bash ./config.status --recheck
 /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/heterotachy'
 /bin/install -c -o pbulk -g pbulk -m 644 heterotachy/heterotachy.c heterotachy/Makefile heterotachy/README.md '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/heterotachy'
 /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/lg4'
 /bin/install -c -o pbulk -g pbulk -m 644 lg4/lg4.c lg4/Makefile '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/lg4'
 /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/lg4/data'
 /bin/install -c -o pbulk -g pbulk -m 644 lg4/data/example.fas lg4/data/example.tree '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/lg4/data'
 /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/load-utree'
 /bin/install -c -o pbulk -g pbulk -m 644 load-utree/load-utree.c load-utree/Makefile load-utree/README.md '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/load-utree'
 /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/newick-fasta-rooted'
 /bin/install -c -o pbulk -g pbulk -m 644 newick-fasta-rooted/newick-fasta-rooted.c newick-fasta-rooted/Makefile '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/newick-fasta-rooted'
 /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/newick-fasta-unrooted'
 /bin/install -c -o pbulk -g pbulk -m 644 newick-fasta-unrooted/newick-fasta-unrooted.c newick-fasta-unrooted/Makefile '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/newick-fasta-unrooted'
 /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/newick-phylip-unrooted'
 /bin/install -c -o pbulk -g pbulk -m 644 newick-phylip-unrooted/newick-phylip-unrooted.c newick-phylip-unrooted/Makefile '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/newick-phylip-unrooted'
 /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/newton'
 /bin/install -c -o pbulk -g pbulk -m 644 newton/newton.c newton/Makefile newton/README.md '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/newton'
 /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/parsimony'
 /bin/install -c -o pbulk -g pbulk -m 644 parsimony/npr-pars.c parsimony/Makefile '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/parsimony'
 /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/partial-traversal'
 /bin/install -c -o pbulk -g pbulk -m 644 partial-traversal/partial.c partial-traversal/Makefile '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/partial-traversal'
 /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/protein-list'
 /bin/install -c -o pbulk -g pbulk -m 644 protein-list/protein-list.c protein-list/Makefile '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/protein-list'
 /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/rooted'
 /bin/install -c -o pbulk -g pbulk -m 644 rooted/rooted.c rooted/Makefile rooted/README.md '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/rooted'
 /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/rooted-tacg'
 /bin/install -c -o pbulk -g pbulk -m 644 rooted-tacg/rooted-tacg.c rooted-tacg/Makefile '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/rooted-tacg'
 /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/stepwise'
 /bin/install -c -o pbulk -g pbulk -m 644 stepwise/stepwise.c stepwise/Makefile '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/stepwise'
 /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/unrooted'
 /bin/install -c -o pbulk -g pbulk -m 644 unrooted/unrooted.c unrooted/Makefile unrooted/README.md '/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/examples/unrooted'
/bin/bash ./config.status --recheck
=> Automatic manual page handling
=> Generating post-install file lists
pkg_create: can't stat `/home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/libpll_manual.pdf'
=> Checking file-check results for libpll-0.3.2
ERROR: ************************************************************
ERROR: The following files are in the PLIST but not in /home/pbulk/build/biology/libpll/work/.destdir/usr/pkg:
ERROR:         /home/pbulk/build/biology/libpll/work/.destdir/usr/pkg/share/doc/libpll/libpll_manual.pdf
*** Error code 1

Stop.
bmake[1]: stopped in /data/jenkins/workspace/pkgsrc-el9-trunk-x86_64/biology/libpll
*** Error code 1

Stop.
bmake: stopped in /data/jenkins/workspace/pkgsrc-el9-trunk-x86_64/biology/libpll