+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /usr/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/libpll-0.3.2/work.log
+ su pbulk -c '"$@"' make /usr/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/libpll-0.3.2/work.log
=> Bootstrap dependency digest>=20211023: found digest-20220214
=> Checksum BLAKE2s OK for libpll-src-0.3.2.tar.gz
=> Checksum SHA512 OK for libpll-src-0.3.2.tar.gz
===> Installing dependencies for libpll-0.3.2
=> Tool dependency libtool-base>=2.4.2nb9: found libtool-base-2.4.7nb1
=> Tool dependency mktools-[0-9]*: found mktools-20220614
=> Tool dependency bison>=1.0: found bison-3.8.2nb1
=> Tool dependency flex>=2.5.4a: found flex-2.6.4
=> Tool dependency nbpatch-[0-9]*: found nbpatch-20151107
=> Tool dependency cwrappers>=20150314: found cwrappers-20220403
=> Tool dependency checkperms>=1.1: found checkperms-1.12
=> Build dependency flex>=2.5.4a: found flex-2.6.4
===> Overriding tools for libpll-0.3.2
===> Extracting for libpll-0.3.2
===> Patching for libpll-0.3.2
=> Applying pkgsrc patches for libpll-0.3.2
=> Verifying /data/jenkins/workspace/pkgsrc-el9-trunk-x86_64/biology/libpll/patches/patch-configure
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el9-trunk-x86_64/biology/libpll/patches/patch-configure
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-configure,v 1.1 2023/12/18 01:39:13 thor Exp $
|
|Make stupid check for bison and flex a bit less stupid.
|
|--- configure.orig	2023-02-13 21:30:40.779472369 +0000
|+++ configure
--------------------------
Patching file configure using Plan A...
Hunk #1 succeeded at 11880.
done
=> Verifying /data/jenkins/workspace/pkgsrc-el9-trunk-x86_64/biology/libpll/patches/patch-configure.ac
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el9-trunk-x86_64/biology/libpll/patches/patch-configure.ac
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-configure.ac,v 1.1 2023/12/18 01:39:13 thor Exp $
|
|Make stupid checks for bison and flex a bit less stupid.
|
|--- configure.ac.orig	2023-02-13 21:28:47.785056736 +0000
|+++ configure.ac
--------------------------
Patching file configure.ac using Plan A...
Hunk #1 succeeded at 20.
done
===> Creating toolchain wrappers for libpll-0.3.2
===> Configuring for libpll-0.3.2
=> Modifying GNU configure scripts to avoid --recheck
=> Replacing config-guess with pkgsrc versions
=> Replacing config-sub with pkgsrc versions
=> Replacing install-sh with pkgsrc version
=> Checking for portability problems in extracted files
checking for a BSD-compatible install... /bin/install -c -o pbulk -g pbulk
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /home/pbulk/build/biology/libpll/work/.tools/bin/mkdir -p
checking for gawk... /bin/gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking for x86_64-redhat-linux-gcc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking whether cc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of cc... gcc3
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... (cached) /bin/grep
checking for egrep... (cached) /bin/egrep
checking for fgrep... /bin/grep -F
checking for ld used by cc... /home/pbulk/build/biology/libpll/work/.cwrapper/bin/ld
checking if the linker (/home/pbulk/build/biology/libpll/work/.cwrapper/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /bin/nm -B
checking the name lister (/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... (cached) 2097152
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /home/pbulk/build/biology/libpll/work/.cwrapper/bin/ld option to reload object files... -r
checking for x86_64-redhat-linux-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-redhat-linux-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-redhat-linux-ar... no
checking for ar... ar
checking for archiver @FILE support... @
checking for x86_64-redhat-linux-strip... no
checking for strip... strip
checking for x86_64-redhat-linux-ranlib... no
checking for ranlib... ranlib
checking command to parse /bin/nm -B output from cc object... ok
checking for sysroot... no
checking for x86_64-redhat-linux-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... cc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if cc supports -fno-rtti -fno-exceptions... no
checking for cc option to produce PIC... -fPIC -DPIC
checking if cc PIC flag -fPIC -DPIC works... yes
checking if cc static flag -static works... no
checking if cc supports -c -o file.o... /bin/rm: cannot remove 'conftest*': No such file or directory
yes
checking if cc supports -c -o file.o... (cached) yes
checking whether the cc linker (/home/pbulk/build/biology/libpll/work/.cwrapper/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... /bin/rm: cannot remove 'conftest*': No such file or directory
no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for flex... flex
checking lex output file root... lex.yy
checking lex library... -lfl
checking whether yytext is a pointer... yes
checking for bison... /usr/pkg/bin/bison -y
checking for exp in -lm... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking math.h usability... yes
checking math.h presence... yes
checking for math.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking x86intrin.h usability... yes
checking x86intrin.h presence... yes
checking for x86intrin.h... yes
checking for inline... inline
checking for size_t... yes
checking for uint32_t... yes
checking for int64_t... yes
checking for uint64_t... yes
checking for uint8_t... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking for asprintf... yes
checking for memcpy... yes
checking for memset... yes
checking for posix_memalign... yes
checking for ps2pdf... no
configure: WARNING: *** ps2pdf is required to build a PDF version of the manual
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating man/Makefile
config.status: creating examples/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
/bin/rm: cannot remove 'libtoolT': No such file or directory

  libpll 0.3.2

    Target:    linux-gnu x86_64
    Compiler:  cc
    CFLAGS:    -g -I/usr/pkg/include
    LIBS:      -lm  -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib

  Continue with 'make' command

=> Modifying libtool scripts to use pkgsrc libtool
=> Modifying libtool scripts to use pkgsrc depcomp