+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /usr/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/mpich-3.4.3/work.log
+ su pbulk -c '"$@"' make /usr/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/mpich-3.4.3/work.log
=> Bootstrap dependency digest>=20211023: found digest-20220214
=> Checksum BLAKE2s OK for mpich-3.4.3.tar.gz
=> Checksum SHA512 OK for mpich-3.4.3.tar.gz
===> Installing dependencies for mpich-3.4.3
==========================================================================
The supported build options for mpich are:
debug f90
The currently selected options are:
f90
You can select which build options to use by setting PKG_DEFAULT_OPTIONS
or the following variable. Its current value is shown:
PKG_OPTIONS.mpich (not defined)
==========================================================================
=> Tool dependency libtool-fortran>=2.4.2nb9: found libtool-fortran-2.4.7nb1
=> Tool dependency libtool-base>=2.4.2nb9: found libtool-base-2.4.7nb1
=> Tool dependency mktools-[0-9]*: found mktools-20220614
=> Tool dependency nbpatch-[0-9]*: found nbpatch-20151107
=> Tool dependency cwrappers>=20150314: found cwrappers-20220403
=> Tool dependency checkperms>=1.1: found checkperms-1.12
=> Full dependency bash-[0-9]*: found bash-5.2.37
=> Full dependency perl>=5.0: found perl-5.40.0nb1
=> Full dependency openpa>=1.0.1: found openpa-1.0.4
===> Overriding tools for mpich-3.4.3
===> Extracting for mpich-3.4.3
===> Patching for mpich-3.4.3
=> Applying pkgsrc patches for mpich-3.4.3
=> Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-configure
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-configure
Hmm... Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-configure,v 1.3 2022/08/25 21:46:53 thor Exp $
|
|Portability fix.
|Make it use weak symbols with Clang.
|
|--- configure.orig 2021-12-16 17:26:22.000000000 +0000
|+++ configure
--------------------------
Patching file configure using Plan A...
Hunk #1 succeeded at 30608.
Hunk #2 succeeded at 57642.
done
=> Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-Makefile.in
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-Makefile.in
Hmm... Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-Makefile.in,v 1.4 2018/11/04 11:49:40 bsiegert Exp $
|
|Do not create libopa symlink; it conflicts with parallel/openpa/PLIST.
|
|--- Makefile.in.orig 2015-11-12 04:08:10.000000000 +0000
|+++ Makefile.in
--------------------------
Patching file Makefile.in using Plan A...
Hunk #1 succeeded at 44736 (offset 4952 lines).
done
=> Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-modules_libfabric_configure
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-modules_libfabric_configure
Hmm... Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-modules_libfabric_configure,v 1.1 2022/08/25 21:46:53 thor Exp $
|
|portability fix
|
|--- modules/libfabric/configure.orig 2022-08-18 16:44:09.581778796 +0000
|+++ modules/libfabric/configure
--------------------------
Patching file modules/libfabric/configure using Plan A...
Hunk #1 succeeded at 14731.
Hunk #2 succeeded at 24596.
Hunk #3 succeeded at 28163.
Hunk #4 succeeded at 30927.
Hunk #5 succeeded at 30939.
Hunk #6 succeeded at 32360.
Hunk #7 succeeded at 32619.
done
=> Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-modules_ucx_configure
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-modules_ucx_configure
Hmm... Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-modules_ucx_configure,v 1.1 2022/08/25 21:46:53 thor Exp $
|
|portability fix
|
|--- modules/ucx/configure.orig 2022-08-18 16:47:01.411794685 +0000
|+++ modules/ucx/configure
--------------------------
Patching file modules/ucx/configure using Plan A...
Hunk #1 succeeded at 20741.
done
=> Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_include_mpidi_ch3_impl.h
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_include_mpidi_ch3_impl.h
Hmm... Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-src_mpid_ch3_channels_nemesis_include_mpidi_ch3_impl.h,v 1.2 2017/04/29 18:18:52 adam Exp $
|
|Use pthread_mutexattr_setpshared() only when available.
|
|--- src/mpid/ch3/channels/nemesis/include/mpidi_ch3_impl.h.orig 2015-11-10 02:39:01.000000000 +0000
|+++ src/mpid/ch3/channels/nemesis/include/mpidi_ch3_impl.h
--------------------------
Patching file src/mpid/ch3/channels/nemesis/include/mpidi_ch3_impl.h using Plan A...
Hunk #1 succeeded at 101 (offset -5 lines).
Hunk #2 succeeded at 120 (offset -5 lines).
done
=> Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_src_ch3__init.c
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_src_ch3__init.c
Hmm... Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-src_mpid_ch3_channels_nemesis_src_ch3__init.c,v 1.2 2022/08/25 21:46:53 thor Exp $
|
|Use pthread_mutexattr_setpshared() only when available.
|
|--- src/mpid/ch3/channels/nemesis/src/ch3_init.c.orig 2021-12-16 16:59:29.000000000 +0000
|+++ src/mpid/ch3/channels/nemesis/src/ch3_init.c
--------------------------
Patching file src/mpid/ch3/channels/nemesis/src/ch3_init.c using Plan A...
Hunk #1 succeeded at 62.
Hunk #2 succeeded at 74.
done
=> Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpi_romio_configure
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpi_romio_configure
Hmm... Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-src_mpi_romio_configure,v 1.2 2022/08/25 21:46:53 thor Exp $
|
|Portability fix.
|
|--- src/mpi/romio/configure.orig 2021-12-16 17:23:19.000000000 +0000
|+++ src/mpi/romio/configure
--------------------------
Patching file src/mpi/romio/configure using Plan A...
Hunk #1 succeeded at 22938.
Hunk #2 succeeded at 24020.
done
=> Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpi_romio_mpl_src_sock_mpl__sockaddr.c
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpi_romio_mpl_src_sock_mpl__sockaddr.c
Hmm... Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-src_mpi_romio_mpl_src_sock_mpl__sockaddr.c,v 1.1 2022/10/02 15:35:24 he Exp $
|
|Conditionalize use of AI_V4MAPPED (not present on NetBSD).
|
|--- src/mpi/romio/mpl/src/sock/mpl_sockaddr.c.orig 2021-12-16 16:59:29.000000000 +0000
|+++ src/mpi/romio/mpl/src/sock/mpl_sockaddr.c
--------------------------
Patching file src/mpi/romio/mpl/src/sock/mpl_sockaddr.c using Plan A...
Hunk #1 succeeded at 98.
done
=> Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpl_src_sock_mpl__sockaddr.c
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpl_src_sock_mpl__sockaddr.c
Hmm... Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-src_mpl_src_sock_mpl__sockaddr.c,v 1.1 2022/10/02 15:35:24 he Exp $
|
|Conditionalize use of AI_V4MAPPED (not present on NetBSD).
|
|--- src/mpl/src/sock/mpl_sockaddr.c.orig 2021-12-16 16:59:29.000000000 +0000
|+++ src/mpl/src/sock/mpl_sockaddr.c
--------------------------
Patching file src/mpl/src/sock/mpl_sockaddr.c using Plan A...
Hunk #1 succeeded at 98.
done
=> Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_pm_hydra2_mpl_src_sock_mpl__sockaddr.c
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_pm_hydra2_mpl_src_sock_mpl__sockaddr.c
Hmm... Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-src_pm_hydra2_mpl_src_sock_mpl__sockaddr.c,v 1.1 2022/10/02 15:35:24 he Exp $
|
|Conditionalize use of AI_V4MAPPED (not present on NetBSD).
|
|--- src/pm/hydra2/mpl/src/sock/mpl_sockaddr.c.orig 2021-12-16 16:59:29.000000000 +0000
|+++ src/pm/hydra2/mpl/src/sock/mpl_sockaddr.c
--------------------------
Patching file src/pm/hydra2/mpl/src/sock/mpl_sockaddr.c using Plan A...
Hunk #1 succeeded at 98.
done
=> Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_pm_hydra_configure
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_pm_hydra_configure
Hmm... Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-src_pm_hydra_configure,v 1.3 2017/04/29 18:18:52 adam Exp $
|
|Last newline is not needed.
|
|--- src/pm/hydra/configure.orig 2012-12-20 21:28:12.000000000 +0100
|+++ src/pm/hydra/configure 2013-01-24 15:36:08.260189221 +0100
--------------------------
Patching file src/pm/hydra/configure using Plan A...
Hunk #1 succeeded at 14911 (offset 538 lines).
done
=> Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_pm_hydra_mpl_src_sock_mpl__sockaddr.c
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_pm_hydra_mpl_src_sock_mpl__sockaddr.c
Hmm... Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-src_pm_hydra_mpl_src_sock_mpl__sockaddr.c,v 1.1 2022/10/02 15:35:24 he Exp $
|
|Conditionalize use of AI_V4MAPPED (not present on NetBSD).
|
|--- src/pm/hydra/mpl/src/sock/mpl_sockaddr.c.orig 2021-12-16 16:59:29.000000000 +0000
|+++ src/pm/hydra/mpl/src/sock/mpl_sockaddr.c
--------------------------
Patching file src/pm/hydra/mpl/src/sock/mpl_sockaddr.c using Plan A...
Hunk #1 succeeded at 98.
done
===> Creating toolchain wrappers for mpich-3.4.3
===> Configuring for mpich-3.4.3
=> Modifying GNU configure scripts to avoid --recheck
=> Replacing config-guess with pkgsrc versions
=> Replacing config-sub with pkgsrc versions
=> Replacing install-sh with pkgsrc version
configure: WARNING: unrecognized options: --with-openpa-prefix, --with-thread-package, --enable-wrapper-rpath
Configuring MPICH version 3.4.3 with '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-device=ch3' '--with-thread-package=posix' '--enable-wrapper-rpath' '--enable-fortran=yes' '--prefix=/usr/pkg' '--build=x86_64-redhat-linux' '--host=x86_64-redhat-linux' '--mandir=/usr/pkg/man' '--enable-option-checking=yes' 'build_alias=x86_64-redhat-linux' 'host_alias=x86_64-redhat-linux' 'CC=cc' 'CFLAGS=-pipe -O2 -I/usr/pkg/include -I/usr/include' 'LDFLAGS=-lm -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include -I/usr/include' 'CXX=c++' 'CXXFLAGS=-pipe -O2 -I/usr/pkg/include -I/usr/include' 'FC=gfortran' 'F77=gfortran' 'FFLAGS=-O -fallow-argument-mismatch' 'PKG_CONFIG=/home/pbulk/build/parallel/mpi-ch/work/.tools/bin/pkg-config'
Running on system: Linux pkgsrc-el8 4.18.0-553.8.1.el8_10.x86_64 #1 SMP Tue Jul 2 17:10:26 UTC 2024 x86_64 x86_64 x86_64 GNU/Linux
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking target system type... x86_64-redhat-linux-gnu
checking for x86_64-redhat-linux-gcc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking whether cc understands -c and -o together... yes
checking for cc option to accept ISO C99... none needed
checking how to run the C preprocessor... cc -E
checking for grep that handles long lines and -e... (cached) /bin/grep
checking for egrep... (cached) /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for a BSD-compatible install... /bin/install -c -o pbulk -g pbulk
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /home/pbulk/build/parallel/mpi-ch/work/.tools/bin/mkdir -p
checking for gawk... /bin/gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking whether make supports nested variables... yes
checking dependency style of cc... gcc3
checking whether to enable maintainer-specific portions of Makefiles... yes
checking for x86_64-redhat-linux-ar... no
checking for x86_64-redhat-linux-lib... no
checking for x86_64-redhat-linux-link... no
checking for ar... ar
checking the archiver (ar) interface... ar
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by cc... /home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld
checking if the linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /bin/nm -B
checking the name lister (/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... (cached) 2097152
checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld option to reload object files... -r
checking for x86_64-redhat-linux-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-redhat-linux-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-redhat-linux-ar... ar
checking for archiver @FILE support... @
checking for x86_64-redhat-linux-strip... no
checking for strip... strip
checking for x86_64-redhat-linux-ranlib... no
checking for ranlib... ranlib
checking command to parse /bin/nm -B output from cc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for x86_64-redhat-linux-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if cc supports -fno-rtti -fno-exceptions... no
checking for cc option to produce PIC... -fPIC -DPIC
checking if cc PIC flag -fPIC -DPIC works... yes
checking if cc static flag -static works... no
checking if cc supports -c -o file.o... /bin/rm: cannot remove 'conftest*': No such file or directory
yes
checking if cc supports -c -o file.o... (cached) yes
checking whether the cc linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... /bin/rm: cannot remove 'conftest*': No such file or directory
no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether make supports nested variables... (cached) yes
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking dependency style of c++... gcc3
checking how to run the C++ preprocessor... c++ -E
checking for ld used by c++... /home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld -m elf_x86_64
checking if the linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the c++ linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for c++ option to produce PIC... -fPIC -DPIC
checking if c++ PIC flag -fPIC -DPIC works... yes
checking if c++ static flag -static works... no
checking if c++ supports -c -o file.o... /bin/rm: cannot remove 'conftest*': No such file or directory
yes
checking if c++ supports -c -o file.o... (cached) yes
checking whether the c++ linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for x86_64-redhat-linux-gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... /bin/rm: cannot remove 'conftest*': No such file or directory
yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for x86_64-redhat-linux-g77... gfortran
checking whether we are using the GNU Fortran 77 compiler... no
checking whether gfortran accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gfortran option to produce PIC...
checking if gfortran static flag works... no
checking if gfortran supports -c -o file.o... /bin/rm: cannot remove 'conftest*': No such file or directory
no
checking if gfortran supports -c -o file.o... (cached) no
checking whether the gfortran linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking hcoll/api/hcoll_api.h usability... no
checking hcoll/api/hcoll_api.h presence... no
checking for hcoll/api/hcoll_api.h... no
checking for hcoll_init in -lhcoll... no
configure: RUNNING PREREQ FOR ch3:nemesis
configure: ===== configuring src/mpl =====
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/usr/pkg' --disable-versioning --enable-embedded '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-device=ch3' '--with-thread-package=posix' '--enable-wrapper-rpath' '--enable-fortran=yes' '--build=x86_64-redhat-linux' '--host=x86_64-redhat-linux' '--mandir=/usr/pkg/man' '--enable-option-checking=yes' 'build_alias=x86_64-redhat-linux' 'host_alias=x86_64-redhat-linux' 'CC=cc' 'CFLAGS=-pipe -O2 -I/usr/pkg/include -I/usr/include ' 'LDFLAGS=-lm -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include -I/usr/include ' 'CXX=c++' 'CXXFLAGS=-pipe -O2 -I/usr/pkg/include -I/usr/include ' 'FC=gfortran' 'F77=gfortran' 'FFLAGS=-O -fallow-argument-mismatch ' 'PKG_CONFIG=/home/pbulk/build/parallel/mpi-ch/work/.tools/bin/pkg-config' --cache-file=/dev/null --srcdir=.
configure: WARNING: unrecognized options: --with-openpa-prefix, --with-pm, --with-device, --enable-wrapper-rpath, --enable-fortran
checking for a BSD-compatible install... /bin/install -c -o pbulk -g pbulk
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /home/pbulk/build/parallel/mpi-ch/work/.tools/bin/mkdir -p
checking for gawk... /bin/gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for x86_64-redhat-linux-gcc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking whether cc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of cc... gcc3
checking for cc option to accept ISO C99... none needed
checking how to run the C preprocessor... cc -E
checking for grep that handles long lines and -e... (cached) /bin/grep
checking for egrep... (cached) /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for x86_64-redhat-linux-ar... no
checking for x86_64-redhat-linux-lib... no
checking for x86_64-redhat-linux-link... no
checking for ar... ar
checking the archiver (ar) interface... ar
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking how to print strings... printf
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checking for fgrep... /bin/grep -F
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configure: ===== done with src/mpl configure =====
configure: sourcing src/mpl/localdefs
configure: ===== configuring modules/yaksa =====
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/usr/pkg' --enable-embedded '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-device=ch3' '--with-thread-package=posix' '--enable-wrapper-rpath' '--enable-fortran=yes' '--build=x86_64-redhat-linux' '--host=x86_64-redhat-linux' '--mandir=/usr/pkg/man' '--enable-option-checking=yes' 'build_alias=x86_64-redhat-linux' 'host_alias=x86_64-redhat-linux' 'CC=cc' 'CFLAGS=-pipe -O2 -I/usr/pkg/include -I/usr/include ' 'LDFLAGS=-lm -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include -I/usr/include -I/home/pbulk/build/parallel/mpi-ch/work/mpich-3.4.3/src/mpl/include -I/home/pbulk/build/parallel/mpi-ch/work/mpich-3.4.3/src/mpl/include' 'CXX=c++' 'CXXFLAGS=-pipe -O2 -I/usr/pkg/include -I/usr/include ' 'FC=gfortran' 'F77=gfortran' 'FFLAGS=-O -fallow-argument-mismatch ' 'PKG_CONFIG=/home/pbulk/build/parallel/mpi-ch/work/.tools/bin/pkg-config' --cache-file=/dev/null --srcdir=.
configure: WARNING: unrecognized options: --with-openpa-prefix, --with-pm, --with-device, --with-thread-package, --enable-wrapper-rpath, --enable-fortran
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configure: creating ./config.status
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config.status: creating Doxyfile
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config.status: creating src/frontend/include/yaksa_config.h
config.status: executing depfiles commands
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configure: WARNING: unrecognized options: --with-openpa-prefix, --with-pm, --with-device, --with-thread-package, --enable-wrapper-rpath, --enable-fortran
##################################################################
# Final status of compiled yaksa modules
##################################################################
Backends supported: seq
##################################################################
# End of yaksa configure
##################################################################
configure: ===== done with modules/yaksa configure =====
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configure: ===== configuring modules/json-c =====
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/usr/pkg' --enable-embedded --disable-werror '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-device=ch3' '--with-thread-package=posix' '--enable-wrapper-rpath' '--enable-fortran=yes' '--build=x86_64-redhat-linux' '--host=x86_64-redhat-linux' '--mandir=/usr/pkg/man' '--enable-option-checking=yes' 'build_alias=x86_64-redhat-linux' 'host_alias=x86_64-redhat-linux' 'CC=cc' 'CFLAGS=-pipe -O2 -I/usr/pkg/include -I/usr/include' 'LDFLAGS=-lm -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include -I/usr/include' 'CXX=c++' 'CXXFLAGS=-pipe -O2 -I/usr/pkg/include -I/usr/include' 'FC=gfortran' 'F77=gfortran' 'FFLAGS=-O -fallow-argument-mismatch' 'PKG_CONFIG=/home/pbulk/build/parallel/mpi-ch/work/.tools/bin/pkg-config' --cache-file=/dev/null --srcdir=.
configure: WARNING: unrecognized options: --with-openpa-prefix, --with-pm, --with-device, --with-thread-package, --enable-wrapper-rpath, --enable-fortran
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checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking for style of include used by make... GNU
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checking whether routines compiled with -fvisibility=hidden can be linked with ones compiled without -fvisibility=hidden... yes
Multi-threaded support disabled. Use --enable-threading to enable.
RDRAND Hardware RNG Hash Seed disabled. Use --enable-rdrand to enable
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checking whether ln -s works... yes
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checking how to hardcode library paths into programs... immediate
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checking whether to build shared libraries... yes
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checking whether C compiler accepts option -diag-disable=all... no
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking for compatibility with _REENTRANT and toolchain headers... yes
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of size_t... 8
checking size of int64_t... 8
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating json-c.pc
config.status: creating tests/Makefile
config.status: creating json-c-uninstalled.pc
config.status: creating config.h
config.status: creating json_config.h
config.status: executing depfiles commands
config.status: executing libtool commands
/bin/rm: cannot remove 'libtoolT': No such file or directory
configure: WARNING: unrecognized options: --with-openpa-prefix, --with-pm, --with-device, --with-thread-package, --enable-wrapper-rpath, --enable-fortran
configure: ===== done with modules/json-c configure =====
checking pkg-config is at least version 0.9.0... no
checking for X... no
###
### Configuring hwloc core
###
checking hwloc building mode... embedded
configure: hwloc builddir: /home/pbulk/build/parallel/mpi-ch/work/mpich-3.4.3/modules/hwloc
configure: hwloc srcdir: /home/pbulk/build/parallel/mpi-ch/work/mpich-3.4.3/modules/hwloc
checking for hwloc version... 2.4.1rc3-git
checking if want hwloc maintainer support... disabled (embedded mode)
checking for hwloc directory prefix... modules/hwloc/
checking for hwloc symbol prefix... hwloc_
checking for cc option to accept ISO C99... (cached) none needed
checking for the C compiler vendor... gnu
checking size of void *... 8
checking which OS support to include... Linux
checking which CPU support to include... x86_64
checking size of unsigned long... 8
checking size of unsigned int... 4
checking for __attribute__... yes
checking for __attribute__(aligned)... yes
checking for __attribute__(always_inline)... yes
checking for __attribute__(cold)... yes
checking for __attribute__(const)... yes
checking for __attribute__(deprecated)... yes
checking for __attribute__(format)... yes
checking for __attribute__(hot)... yes
checking for __attribute__(malloc)... yes
checking for __attribute__(may_alias)... yes
checking for __attribute__(no_instrument_function)... yes
checking for __attribute__(nonnull)... yes
checking for __attribute__(noreturn)... yes
checking for __attribute__(packed)... yes
checking for __attribute__(pure)... yes
checking for __attribute__(sentinel)... yes
checking for __attribute__(unused)... yes
checking for __attribute__(warn_unused_result)... yes
checking for __attribute__(weak_alias)... yes
checking whether to enable symbol visibility... no (disabled)
checking whether the C compiler rejects function calls with too many arguments... yes
checking whether the C compiler rejects function calls with too few arguments... yes
checking for unistd.h... (cached) yes
checking dirent.h usability... yes
checking dirent.h presence... yes
checking for dirent.h... yes
checking for strings.h... (cached) yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking for strcasecmp... yes
checking whether strcasecmp is declared... yes
checking whether function strcasecmp has a complete prototype... yes
checking for strncasecmp... yes
checking whether strncasecmp is declared... yes
checking whether function strncasecmp has a complete prototype... yes
checking for strftime... yes
checking for setlocale... yes
checking for stdint.h... (cached) yes
checking sys/mman.h usability... yes
checking sys/mman.h presence... yes
checking for sys/mman.h... yes
**** Linux-specific checks
checking whether sched_getcpu is declared... yes
checking whether sched_setaffinity is declared... yes
checking whether function sched_setaffinity has a complete prototype... yes
checking for old prototype of sched_setaffinity... no
checking for working CPU_SET... yes
checking for working CPU_SET_S... yes
checking for working syscall with 6 parameters... yes
checking libudev.h usability... no
checking libudev.h presence... no
checking for libudev.h... no
**** end of Linux-specific checks
checking whether pthread_setaffinity_np is declared... yes
checking whether pthread_getaffinity_np is declared... yes
checking whether fabsf is declared... yes
checking for fabsf in -lm... yes
checking whether modff is declared... yes
checking for modff in -lm... yes
checking whether _SC_NPROCESSORS_ONLN is declared... yes
checking whether _SC_NPROCESSORS_CONF is declared... yes
checking whether _SC_NPROC_ONLN is declared... no
checking whether _SC_NPROC_CONF is declared... no
checking whether _SC_PAGESIZE is declared... yes
checking whether _SC_PAGE_SIZE is declared... yes
checking whether _SC_LARGE_PAGESIZE is declared... no
checking mach/mach_init.h usability... no
checking mach/mach_init.h presence... no
checking for mach/mach_init.h... no
checking mach_init.h usability... no
checking mach_init.h presence... no
checking for mach_init.h... no
checking mach/mach_host.h usability... no
checking mach/mach_host.h presence... no
checking for mach/mach_host.h... no
checking whether strtoull is declared... yes
checking for ssize_t... yes
checking whether snprintf is declared... yes
checking whether _strdup is declared... no
checking whether _putenv is declared... no
checking whether snprintf is correct... yes
checking whether getprogname is declared... no
checking whether getexecname is declared... no
checking for program_invocation_name... yes
checking for __progname... yes
checking for pthread_t... yes
checking for bash... /bin/bash
checking for ffs... yes
checking whether ffs is declared... yes
checking whether function ffs has a complete prototype... yes
checking for ffsl... yes
checking whether ffsl is declared... yes
checking whether function ffsl has a complete prototype... yes
checking for fls... no
checking for flsl... no
checking for clz... no
checking for clzl... no
checking for openat... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking for getpagesize... yes
checking for memalign... yes
checking for posix_memalign... yes
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking for uname... yes
checking for PCIACCESS... cannot check without pkg-config
checking pciaccess.h usability... no
checking pciaccess.h presence... no
checking for pciaccess.h... no
checking CL/cl_ext.h usability... no
checking CL/cl_ext.h presence... no
checking for CL/cl_ext.h... no
checking cuda.h usability... no
checking cuda.h presence... no
checking for cuda.h... no
checking cuda_runtime_api.h usability... no
checking cuda_runtime_api.h presence... no
checking for cuda_runtime_api.h... no
checking nvml.h usability... no
checking nvml.h presence... no
checking for nvml.h... no
checking rocm_smi/rocm_smi.h usability... no
checking rocm_smi/rocm_smi.h presence... no
checking for rocm_smi/rocm_smi.h... no
checking X11/Xlib.h usability... no
checking X11/Xlib.h presence... no
checking for X11/Xlib.h... no
configure: WARNING: X11 not found; GL disabled
checking NVCtrl/NVCtrl.h usability... no
checking NVCtrl/NVCtrl.h presence... no
checking for NVCtrl/NVCtrl.h... no
checking for LIBXML2... cannot check without pkg-config
checking for x86 cpuid... yes
checking for pthread_mutex_lock... yes
checking if plugin support is enabled... no
checking components to build statically... noos xml synthetic xml_nolibxml linux x86
checking components to build as plugins...
sourcing /home/pbulk/build/parallel/mpi-ch/work/mpich-3.4.3/src/pm/hydra/mpichprereq
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... no
checking whether the compiler sets __FUNCTION__... yes
checking whether C compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf)
checking whether Fortran 77 compiler accepts option -O2... no
checking how to get verbose linking output from gfortran... configure: WARNING: compilation failed
checking for Fortran 77 libraries of gfortran...
checking whether gfortran accepts the FLIBS found by autoconf... no
checking for valid entries in FLIBS...
checking whether cc links with FLIBS found by autoconf... yes
checking whether Fortran 77 and C objects are compatible... no
checking for file... file
configure: error: **** Incompatible Fortran and C Object File Types! ****
F77 Object File Type produced by "gfortran -O -fallow-argument-mismatch " is : : cannot open `' (No such file or directory).
C Object File Type produced by "cc -pipe -O2 -I/usr/pkg/include -I/usr/include -O2" is : : ELF 64-bit LSB relocatable, x86-64, version 1 (SYSV), not stripped.
*** Error code 1
Stop.
bmake[1]: stopped making "configure" in /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch
*** Error code 1
Stop.
bmake: stopped making "configure" in /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch