+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /usr/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/mpich-3.4.3/work.log + su pbulk -c '"$@"' make /usr/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/mpich-3.4.3/work.log => Bootstrap dependency digest>=20211023: found digest-20220214 => Checksum BLAKE2s OK for mpich-3.4.3.tar.gz => Checksum SHA512 OK for mpich-3.4.3.tar.gz ===> Installing dependencies for mpich-3.4.3 ========================================================================== The supported build options for mpich are: debug f90 The currently selected options are: f90 You can select which build options to use by setting PKG_DEFAULT_OPTIONS or the following variable. Its current value is shown: PKG_OPTIONS.mpich (not defined) ========================================================================== => Tool dependency libtool-fortran>=2.4.2nb9: found libtool-fortran-2.4.7nb1 => Tool dependency libtool-base>=2.4.2nb9: found libtool-base-2.4.7nb1 => Tool dependency mktools-[0-9]*: found mktools-20220614 => Tool dependency nbpatch-[0-9]*: found nbpatch-20151107 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Full dependency bash-[0-9]*: found bash-5.2.37 => Full dependency perl>=5.0: found perl-5.40.0nb1 => Full dependency openpa>=1.0.1: found openpa-1.0.4 ===> Overriding tools for mpich-3.4.3 ===> Extracting for mpich-3.4.3 ===> Patching for mpich-3.4.3 => Applying pkgsrc patches for mpich-3.4.3 => Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-configure => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-configure Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-configure,v 1.3 2022/08/25 21:46:53 thor Exp $ | |Portability fix. |Make it use weak symbols with Clang. | |--- configure.orig 2021-12-16 17:26:22.000000000 +0000 |+++ configure -------------------------- Patching file configure using Plan A... Hunk #1 succeeded at 30608. Hunk #2 succeeded at 57642. done => Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-Makefile.in => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-Makefile.in Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-Makefile.in,v 1.4 2018/11/04 11:49:40 bsiegert Exp $ | |Do not create libopa symlink; it conflicts with parallel/openpa/PLIST. | |--- Makefile.in.orig 2015-11-12 04:08:10.000000000 +0000 |+++ Makefile.in -------------------------- Patching file Makefile.in using Plan A... Hunk #1 succeeded at 44736 (offset 4952 lines). done => Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-modules_libfabric_configure => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-modules_libfabric_configure Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-modules_libfabric_configure,v 1.1 2022/08/25 21:46:53 thor Exp $ | |portability fix | |--- modules/libfabric/configure.orig 2022-08-18 16:44:09.581778796 +0000 |+++ modules/libfabric/configure -------------------------- Patching file modules/libfabric/configure using Plan A... Hunk #1 succeeded at 14731. Hunk #2 succeeded at 24596. Hunk #3 succeeded at 28163. Hunk #4 succeeded at 30927. Hunk #5 succeeded at 30939. Hunk #6 succeeded at 32360. Hunk #7 succeeded at 32619. done => Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-modules_ucx_configure => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-modules_ucx_configure Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-modules_ucx_configure,v 1.1 2022/08/25 21:46:53 thor Exp $ | |portability fix | |--- modules/ucx/configure.orig 2022-08-18 16:47:01.411794685 +0000 |+++ modules/ucx/configure -------------------------- Patching file modules/ucx/configure using Plan A... Hunk #1 succeeded at 20741. done => Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_include_mpidi_ch3_impl.h => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_include_mpidi_ch3_impl.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_mpid_ch3_channels_nemesis_include_mpidi_ch3_impl.h,v 1.2 2017/04/29 18:18:52 adam Exp $ | |Use pthread_mutexattr_setpshared() only when available. | |--- src/mpid/ch3/channels/nemesis/include/mpidi_ch3_impl.h.orig 2015-11-10 02:39:01.000000000 +0000 |+++ src/mpid/ch3/channels/nemesis/include/mpidi_ch3_impl.h -------------------------- Patching file src/mpid/ch3/channels/nemesis/include/mpidi_ch3_impl.h using Plan A... Hunk #1 succeeded at 101 (offset -5 lines). Hunk #2 succeeded at 120 (offset -5 lines). done => Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_src_ch3__init.c => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_src_ch3__init.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_mpid_ch3_channels_nemesis_src_ch3__init.c,v 1.2 2022/08/25 21:46:53 thor Exp $ | |Use pthread_mutexattr_setpshared() only when available. | |--- src/mpid/ch3/channels/nemesis/src/ch3_init.c.orig 2021-12-16 16:59:29.000000000 +0000 |+++ src/mpid/ch3/channels/nemesis/src/ch3_init.c -------------------------- Patching file src/mpid/ch3/channels/nemesis/src/ch3_init.c using Plan A... Hunk #1 succeeded at 62. Hunk #2 succeeded at 74. done => Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpi_romio_configure => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpi_romio_configure Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_mpi_romio_configure,v 1.2 2022/08/25 21:46:53 thor Exp $ | |Portability fix. | |--- src/mpi/romio/configure.orig 2021-12-16 17:23:19.000000000 +0000 |+++ src/mpi/romio/configure -------------------------- Patching file src/mpi/romio/configure using Plan A... Hunk #1 succeeded at 22938. Hunk #2 succeeded at 24020. done => Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpi_romio_mpl_src_sock_mpl__sockaddr.c => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpi_romio_mpl_src_sock_mpl__sockaddr.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_mpi_romio_mpl_src_sock_mpl__sockaddr.c,v 1.1 2022/10/02 15:35:24 he Exp $ | |Conditionalize use of AI_V4MAPPED (not present on NetBSD). | |--- src/mpi/romio/mpl/src/sock/mpl_sockaddr.c.orig 2021-12-16 16:59:29.000000000 +0000 |+++ src/mpi/romio/mpl/src/sock/mpl_sockaddr.c -------------------------- Patching file src/mpi/romio/mpl/src/sock/mpl_sockaddr.c using Plan A... Hunk #1 succeeded at 98. done => Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpl_src_sock_mpl__sockaddr.c => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_mpl_src_sock_mpl__sockaddr.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_mpl_src_sock_mpl__sockaddr.c,v 1.1 2022/10/02 15:35:24 he Exp $ | |Conditionalize use of AI_V4MAPPED (not present on NetBSD). | |--- src/mpl/src/sock/mpl_sockaddr.c.orig 2021-12-16 16:59:29.000000000 +0000 |+++ src/mpl/src/sock/mpl_sockaddr.c -------------------------- Patching file src/mpl/src/sock/mpl_sockaddr.c using Plan A... Hunk #1 succeeded at 98. done => Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_pm_hydra2_mpl_src_sock_mpl__sockaddr.c => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_pm_hydra2_mpl_src_sock_mpl__sockaddr.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_pm_hydra2_mpl_src_sock_mpl__sockaddr.c,v 1.1 2022/10/02 15:35:24 he Exp $ | |Conditionalize use of AI_V4MAPPED (not present on NetBSD). | |--- src/pm/hydra2/mpl/src/sock/mpl_sockaddr.c.orig 2021-12-16 16:59:29.000000000 +0000 |+++ src/pm/hydra2/mpl/src/sock/mpl_sockaddr.c -------------------------- Patching file src/pm/hydra2/mpl/src/sock/mpl_sockaddr.c using Plan A... Hunk #1 succeeded at 98. done => Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_pm_hydra_configure => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_pm_hydra_configure Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_pm_hydra_configure,v 1.3 2017/04/29 18:18:52 adam Exp $ | |Last newline is not needed. | |--- src/pm/hydra/configure.orig 2012-12-20 21:28:12.000000000 +0100 |+++ src/pm/hydra/configure 2013-01-24 15:36:08.260189221 +0100 -------------------------- Patching file src/pm/hydra/configure using Plan A... Hunk #1 succeeded at 14911 (offset 538 lines). done => Verifying /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_pm_hydra_mpl_src_sock_mpl__sockaddr.c => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch/patches/patch-src_pm_hydra_mpl_src_sock_mpl__sockaddr.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_pm_hydra_mpl_src_sock_mpl__sockaddr.c,v 1.1 2022/10/02 15:35:24 he Exp $ | |Conditionalize use of AI_V4MAPPED (not present on NetBSD). | |--- src/pm/hydra/mpl/src/sock/mpl_sockaddr.c.orig 2021-12-16 16:59:29.000000000 +0000 |+++ src/pm/hydra/mpl/src/sock/mpl_sockaddr.c -------------------------- Patching file src/pm/hydra/mpl/src/sock/mpl_sockaddr.c using Plan A... Hunk #1 succeeded at 98. done ===> Creating toolchain wrappers for mpich-3.4.3 ===> Configuring for mpich-3.4.3 => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version configure: WARNING: unrecognized options: --with-openpa-prefix, --with-thread-package, --enable-wrapper-rpath Configuring MPICH version 3.4.3 with '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-device=ch3' '--with-thread-package=posix' '--enable-wrapper-rpath' '--enable-fortran=yes' '--prefix=/usr/pkg' '--build=x86_64-redhat-linux' '--host=x86_64-redhat-linux' '--mandir=/usr/pkg/man' '--enable-option-checking=yes' 'build_alias=x86_64-redhat-linux' 'host_alias=x86_64-redhat-linux' 'CC=cc' 'CFLAGS=-pipe -O2 -I/usr/pkg/include -I/usr/include' 'LDFLAGS=-lm -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include -I/usr/include' 'CXX=c++' 'CXXFLAGS=-pipe -O2 -I/usr/pkg/include -I/usr/include' 'FC=gfortran' 'F77=gfortran' 'FFLAGS=-O -fallow-argument-mismatch' 'PKG_CONFIG=/home/pbulk/build/parallel/mpi-ch/work/.tools/bin/pkg-config' Running on system: Linux pkgsrc-el8 4.18.0-553.8.1.el8_10.x86_64 #1 SMP Tue Jul 2 17:10:26 UTC 2024 x86_64 x86_64 x86_64 GNU/Linux checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking target system type... x86_64-redhat-linux-gnu checking for x86_64-redhat-linux-gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking for cc option to accept ISO C99... none needed checking how to run the C preprocessor... cc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for a BSD-compatible install... /bin/install -c -o pbulk -g pbulk checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /home/pbulk/build/parallel/mpi-ch/work/.tools/bin/mkdir -p checking for gawk... /bin/gawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking whether make supports nested variables... yes checking dependency style of cc... gcc3 checking whether to enable maintainer-specific portions of Makefiles... yes checking for x86_64-redhat-linux-ar... no checking for x86_64-redhat-linux-lib... no checking for x86_64-redhat-linux-link... no checking for ar... ar checking the archiver (ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by cc... /home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld checking if the linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /bin/nm -B checking the name lister (/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 2097152 checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld option to reload object files... -r checking for x86_64-redhat-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-redhat-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-redhat-linux-ar... ar checking for archiver @FILE support... @ checking for x86_64-redhat-linux-strip... no checking for strip... strip checking for x86_64-redhat-linux-ranlib... no checking for ranlib... ranlib checking command to parse /bin/nm -B output from cc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for x86_64-redhat-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... no checking if cc supports -c -o file.o... /bin/rm: cannot remove 'conftest*': No such file or directory yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... /bin/rm: cannot remove 'conftest*': No such file or directory no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make supports nested variables... (cached) yes checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 checking how to run the C++ preprocessor... c++ -E checking for ld used by c++... /home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld -m elf_x86_64 checking if the linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the c++ linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld -m elf_x86_64) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... no checking if c++ supports -c -o file.o... /bin/rm: cannot remove 'conftest*': No such file or directory yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for x86_64-redhat-linux-gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... /bin/rm: cannot remove 'conftest*': No such file or directory yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for x86_64-redhat-linux-g77... gfortran checking whether we are using the GNU Fortran 77 compiler... no checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... checking if gfortran static flag works... no checking if gfortran supports -c -o file.o... /bin/rm: cannot remove 'conftest*': No such file or directory no checking if gfortran supports -c -o file.o... (cached) no checking whether the gfortran linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking hcoll/api/hcoll_api.h usability... no checking hcoll/api/hcoll_api.h presence... no checking for hcoll/api/hcoll_api.h... no checking for hcoll_init in -lhcoll... no configure: RUNNING PREREQ FOR ch3:nemesis configure: ===== configuring src/mpl ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/usr/pkg' --disable-versioning --enable-embedded '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-device=ch3' '--with-thread-package=posix' '--enable-wrapper-rpath' '--enable-fortran=yes' '--build=x86_64-redhat-linux' '--host=x86_64-redhat-linux' '--mandir=/usr/pkg/man' '--enable-option-checking=yes' 'build_alias=x86_64-redhat-linux' 'host_alias=x86_64-redhat-linux' 'CC=cc' 'CFLAGS=-pipe -O2 -I/usr/pkg/include -I/usr/include ' 'LDFLAGS=-lm -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include -I/usr/include ' 'CXX=c++' 'CXXFLAGS=-pipe -O2 -I/usr/pkg/include -I/usr/include ' 'FC=gfortran' 'F77=gfortran' 'FFLAGS=-O -fallow-argument-mismatch ' 'PKG_CONFIG=/home/pbulk/build/parallel/mpi-ch/work/.tools/bin/pkg-config' --cache-file=/dev/null --srcdir=. configure: WARNING: unrecognized options: --with-openpa-prefix, --with-pm, --with-device, --enable-wrapper-rpath, --enable-fortran checking for a BSD-compatible install... /bin/install -c -o pbulk -g pbulk checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /home/pbulk/build/parallel/mpi-ch/work/.tools/bin/mkdir -p checking for gawk... /bin/gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for x86_64-redhat-linux-gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking for cc option to accept ISO C99... none needed checking how to run the C preprocessor... cc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for x86_64-redhat-linux-ar... no checking for x86_64-redhat-linux-lib... no checking for x86_64-redhat-linux-link... no checking for ar... ar checking the archiver (ar) interface... ar checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by cc... /home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld checking if the linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /bin/nm -B checking the name lister (/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 2097152 checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld option to reload object files... -r checking for x86_64-redhat-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-redhat-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-redhat-linux-ar... ar checking for archiver @FILE support... @ checking for x86_64-redhat-linux-strip... no checking for strip... strip checking for x86_64-redhat-linux-ranlib... no checking for ranlib... ranlib checking command to parse /bin/nm -B output from cc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for x86_64-redhat-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... no checking if cc supports -c -o file.o... /bin/rm: cannot remove 'conftest*': No such file or directory yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... /bin/rm: cannot remove 'conftest*': No such file or directory no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking if C compiler supports __builtin_expect... yes checking for C11 _Static_assert functionality... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for sys/types.h... 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(cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... no checking valgrind/helgrind.h presence... no checking for valgrind/helgrind.h... no checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... no checking valgrind/drd.h presence... no checking for valgrind/drd.h... no checking whether the valgrind headers are broken or too old... yes checking for clock_gettime... yes checking for clock_getres... yes checking for gethrtime... no checking for mach_absolute_time... no checking for gettimeofday... yes checking for library containing clock_gettime... none required checking for library containing clock_getres... none required checking whether struct timespec is defined in time.h... yes checking for CLOCK_REALTIME defined in time.h... yes configure: Timer type selected is CLOCK_GETTIME checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... (cached) yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking whether usleep needs a declaration... no checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... yes checking for pthread_key_create... yes checking for thread local storage... _Thread_local checking for pthread_mutex_init... yes checking for pthread_mutexattr_setpshared... yes configure: POSIX will be used for interprocess mutex package. checking size of void *... 8 checking whether C compiler accepts option -Werror... yes checking whether routines compiled with -Werror can be linked with ones compiled without -Werror... yes checking for support for gcc __sync intrinsics... yes checking for support for gcc __atomic intrinsics... yes checking for support for C11 atomic intrinsics... yes checking for support for Windows NT atomic intrinsics... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... no checking for getpid... yes checking for mmap... yes checking for munmap... yes configure: Using a memory-mapped file for shared memory checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no checking for cudaStreamSynchronize in -lcudart... no checking level_zero/ze_api.h usability... no checking level_zero/ze_api.h presence... no checking for level_zero/ze_api.h... no checking for zeInit in -lze_loader... no checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking for strerror... yes checking whether strerror needs a declaration... no checking for usleep... (cached) yes checking whether usleep needs a declaration... (cached) no checking for posix_memalign... yes checking for aligned_alloc... yes checking whether aligned_alloc needs a declaration... no checking for execinfo.h... (cached) yes checking size parameter type for backtrace()... int checking for library containing backtrace... none required checking for library containing gethostbyname... none required checking for library containing socket... none required checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for inet_ntop... yes checking for getifaddrs... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for __attribute__((aligned))... yes checking for __attribute__((used))... yes checking for __attribute__((fallthrough))... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/mpl_timer.h config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands /bin/rm: cannot remove 'libtoolT': No such file or directory config.status: executing prefix-config commands configure: WARNING: unrecognized options: --with-openpa-prefix, --with-pm, --with-device, --enable-wrapper-rpath, --enable-fortran configure: ===== done with src/mpl configure ===== configure: sourcing src/mpl/localdefs configure: ===== configuring modules/yaksa ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/usr/pkg' --enable-embedded '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-device=ch3' '--with-thread-package=posix' '--enable-wrapper-rpath' '--enable-fortran=yes' '--build=x86_64-redhat-linux' '--host=x86_64-redhat-linux' '--mandir=/usr/pkg/man' '--enable-option-checking=yes' 'build_alias=x86_64-redhat-linux' 'host_alias=x86_64-redhat-linux' 'CC=cc' 'CFLAGS=-pipe -O2 -I/usr/pkg/include -I/usr/include ' 'LDFLAGS=-lm -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include -I/usr/include -I/home/pbulk/build/parallel/mpi-ch/work/mpich-3.4.3/src/mpl/include -I/home/pbulk/build/parallel/mpi-ch/work/mpich-3.4.3/src/mpl/include' 'CXX=c++' 'CXXFLAGS=-pipe -O2 -I/usr/pkg/include -I/usr/include ' 'FC=gfortran' 'F77=gfortran' 'FFLAGS=-O -fallow-argument-mismatch ' 'PKG_CONFIG=/home/pbulk/build/parallel/mpi-ch/work/.tools/bin/pkg-config' --cache-file=/dev/null --srcdir=. configure: WARNING: unrecognized options: --with-openpa-prefix, --with-pm, --with-device, --with-thread-package, --enable-wrapper-rpath, --enable-fortran checking for a BSD-compatible install... /bin/install -c -o pbulk -g pbulk checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /home/pbulk/build/parallel/mpi-ch/work/.tools/bin/mkdir -p checking for gawk... /bin/gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking for style of include used by make... GNU checking for x86_64-redhat-linux-gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking dependency style of cc... gcc3 checking dependency style of cc... gcc3 checking for x86_64-redhat-linux-ar... no checking for x86_64-redhat-linux-lib... no checking for x86_64-redhat-linux-link... no checking for ar... ar checking the archiver (ar) interface... ar checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by cc... /home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld checking if the linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /bin/nm -B checking the name lister (/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 2097152 checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld option to reload object files... -r checking for x86_64-redhat-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-redhat-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-redhat-linux-ar... ar checking for archiver @FILE support... @ checking for x86_64-redhat-linux-strip... no checking for strip... strip checking for x86_64-redhat-linux-ranlib... no checking for ranlib... ranlib checking command to parse /bin/nm -B output from cc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for x86_64-redhat-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... cc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... no checking if cc supports -c -o file.o... /bin/rm: cannot remove 'conftest*': No such file or directory yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... /bin/rm: cannot remove 'conftest*': No such file or directory no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for x86_64-redhat-linux-gcc... (cached) cc checking whether we are using the GNU C compiler... (cached) yes checking whether cc accepts -g... (cached) yes checking for cc option to accept ISO C89... (cached) none needed checking whether cc understands -c and -o together... (cached) yes checking dependency style of cc... (cached) gcc3 checking for cc option to accept ISO C99... none needed checking whether C compiler accepts option -std=c11... yes checking whether C compiler option -std=c11 works with an invalid prototype program... yes checking whether routines compiled with -std=c11 can be linked with ones compiled without -std=c11... yes checking for ANSI C header files... (cached) yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking stdatomic.h usability... yes checking stdatomic.h presence... yes checking for stdatomic.h... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no checking for cudaStreamSynchronize in -lcudart... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating Doxyfile config.status: creating maint/yaksa.pc config.status: creating src/frontend/include/yaksa.h config.status: creating src/frontend/include/yaksa_config.h config.status: executing depfiles commands config.status: executing libtool commands /bin/rm: cannot remove 'libtoolT': No such file or directory configure: WARNING: unrecognized options: --with-openpa-prefix, --with-pm, --with-device, --with-thread-package, --enable-wrapper-rpath, --enable-fortran ################################################################## # Final status of compiled yaksa modules ################################################################## Backends supported: seq ################################################################## # End of yaksa configure ################################################################## configure: ===== done with modules/yaksa configure ===== checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for multiple weak symbol support... yes checking if cc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) configure: ===== configuring modules/json-c ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/usr/pkg' --enable-embedded --disable-werror '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-device=ch3' '--with-thread-package=posix' '--enable-wrapper-rpath' '--enable-fortran=yes' '--build=x86_64-redhat-linux' '--host=x86_64-redhat-linux' '--mandir=/usr/pkg/man' '--enable-option-checking=yes' 'build_alias=x86_64-redhat-linux' 'host_alias=x86_64-redhat-linux' 'CC=cc' 'CFLAGS=-pipe -O2 -I/usr/pkg/include -I/usr/include' 'LDFLAGS=-lm -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib64 -Wl,-R/usr/lib64' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include -I/usr/include' 'CXX=c++' 'CXXFLAGS=-pipe -O2 -I/usr/pkg/include -I/usr/include' 'FC=gfortran' 'F77=gfortran' 'FFLAGS=-O -fallow-argument-mismatch' 'PKG_CONFIG=/home/pbulk/build/parallel/mpi-ch/work/.tools/bin/pkg-config' --cache-file=/dev/null --srcdir=. configure: WARNING: unrecognized options: --with-openpa-prefix, --with-pm, --with-device, --with-thread-package, --enable-wrapper-rpath, --enable-fortran checking for a BSD-compatible install... /bin/install -c -o pbulk -g pbulk checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /home/pbulk/build/parallel/mpi-ch/work/.tools/bin/mkdir -p checking for gawk... /bin/gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make sets $(MAKE)... (cached) yes checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking for style of include used by make... GNU checking for x86_64-redhat-linux-gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking dependency style of cc... gcc3 checking whether C compiler accepts option -fvisibility=hidden... yes checking whether routines compiled with -fvisibility=hidden can be linked with ones compiled without -fvisibility=hidden... yes Multi-threaded support disabled. Use --enable-threading to enable. RDRAND Hardware RNG Hash Seed disabled. Use --enable-rdrand to enable checking whether make supports nested variables... (cached) yes checking for cc option to accept ISO C99... none needed checking how to run the C preprocessor... cc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for strings.h... (cached) yes checking syslog.h usability... yes checking syslog.h presence... yes checking for syslog.h... yes checking for unistd.h... (cached) yes checking sys/cdefs.h usability... yes checking sys/cdefs.h presence... yes checking for sys/cdefs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking xlocale.h usability... no checking xlocale.h presence... no checking for xlocale.h... no checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking for inttypes.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking for __thread support... yes checking for vprintf... yes checking for _doprnt... no checking for working memcmp... yes checking for realloc... yes checking for strcasecmp... yes checking for strdup... yes checking for strerror... yes checking for snprintf... yes checking for vsnprintf... yes checking for open... yes checking for strncasecmp... yes checking for setlocale... yes checking whether INFINITY is declared... yes checking whether nan is declared... yes checking whether isnan is declared... yes checking whether isinf is declared... yes checking whether _isnan is declared... no checking whether _finite is declared... no checking for GCC atomic builtins... yes checking for uselocale... yes checking if .gnu.warning accepts long strings... no checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by cc... /home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld checking if the linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /bin/nm -B checking the name lister (/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 2097152 checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld option to reload object files... -r checking for x86_64-redhat-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-redhat-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-redhat-linux-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for x86_64-redhat-linux-strip... no checking for strip... strip checking for x86_64-redhat-linux-ranlib... no checking for ranlib... ranlib checking command to parse /bin/nm -B output from cc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for x86_64-redhat-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... no checking if cc supports -c -o file.o... /bin/rm: cannot remove 'conftest*': No such file or directory yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/home/pbulk/build/parallel/mpi-ch/work/.cwrapper/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... /bin/rm: cannot remove 'conftest*': No such file or directory no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for -Bsymbolic-functions linker flag... yes checking whether C compiler accepts option -Wall... yes checking whether routines compiled with -Wall can be linked with ones compiled without -Wall... yes checking whether C compiler accepts option -Wcast-qual... yes checking whether routines compiled with -Wcast-qual can be linked with ones compiled without -Wcast-qual... yes checking whether C compiler accepts option -Wno-error=deprecated-declarations... yes checking whether routines compiled with -Wno-error=deprecated-declarations can be linked with ones compiled without -Wno-error=deprecated-declarations... yes checking whether C compiler accepts option -Wextra... yes checking whether routines compiled with -Wextra can be linked with ones compiled without -Wextra... yes checking whether C compiler accepts option -Wwrite-strings... yes checking whether routines compiled with -Wwrite-strings can be linked with ones compiled without -Wwrite-strings... yes checking whether C compiler accepts option -Wno-unused-parameter... yes checking whether routines compiled with -Wno-unused-parameter can be linked with ones compiled without -Wno-unused-parameter... yes checking whether C compiler accepts option -D_GNU_SOURCE... yes checking whether routines compiled with -D_GNU_SOURCE can be linked with ones compiled without -D_GNU_SOURCE... yes checking whether C compiler accepts option -diag-disable=all... no checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for compatibility with _REENTRANT and toolchain headers... yes checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of size_t... 8 checking size of int64_t... 8 checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating json-c.pc config.status: creating tests/Makefile config.status: creating json-c-uninstalled.pc config.status: creating config.h config.status: creating json_config.h config.status: executing depfiles commands config.status: executing libtool commands /bin/rm: cannot remove 'libtoolT': No such file or directory configure: WARNING: unrecognized options: --with-openpa-prefix, --with-pm, --with-device, --with-thread-package, --enable-wrapper-rpath, --enable-fortran configure: ===== done with modules/json-c configure ===== checking pkg-config is at least version 0.9.0... no checking for X... no ### ### Configuring hwloc core ### checking hwloc building mode... embedded configure: hwloc builddir: /home/pbulk/build/parallel/mpi-ch/work/mpich-3.4.3/modules/hwloc configure: hwloc srcdir: /home/pbulk/build/parallel/mpi-ch/work/mpich-3.4.3/modules/hwloc checking for hwloc version... 2.4.1rc3-git checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... modules/hwloc/ checking for hwloc symbol prefix... hwloc_ checking for cc option to accept ISO C99... (cached) none needed checking for the C compiler vendor... gnu checking size of void *... 8 checking which OS support to include... Linux checking which CPU support to include... x86_64 checking size of unsigned long... 8 checking size of unsigned int... 4 checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking whether to enable symbol visibility... no (disabled) checking whether the C compiler rejects function calls with too many arguments... yes checking whether the C compiler rejects function calls with too few arguments... yes checking for unistd.h... (cached) yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for strings.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for strcasecmp... yes checking whether strcasecmp is declared... yes checking whether function strcasecmp has a complete prototype... yes checking for strncasecmp... yes checking whether strncasecmp is declared... yes checking whether function strncasecmp has a complete prototype... yes checking for strftime... yes checking for setlocale... yes checking for stdint.h... (cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes **** Linux-specific checks checking whether sched_getcpu is declared... yes checking whether sched_setaffinity is declared... yes checking whether function sched_setaffinity has a complete prototype... yes checking for old prototype of sched_setaffinity... no checking for working CPU_SET... yes checking for working CPU_SET_S... yes checking for working syscall with 6 parameters... yes checking libudev.h usability... no checking libudev.h presence... no checking for libudev.h... no **** end of Linux-specific checks checking whether pthread_setaffinity_np is declared... yes checking whether pthread_getaffinity_np is declared... yes checking whether fabsf is declared... yes checking for fabsf in -lm... yes checking whether modff is declared... yes checking for modff in -lm... yes checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_PAGESIZE is declared... yes checking whether _SC_PAGE_SIZE is declared... yes checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_init.h usability... no checking mach/mach_init.h presence... no checking for mach/mach_init.h... no checking mach_init.h usability... no checking mach_init.h presence... no checking for mach_init.h... no checking mach/mach_host.h usability... no checking mach/mach_host.h presence... no checking for mach/mach_host.h... no checking whether strtoull is declared... yes checking for ssize_t... yes checking whether snprintf is declared... yes checking whether _strdup is declared... no checking whether _putenv is declared... no checking whether snprintf is correct... yes checking whether getprogname is declared... no checking whether getexecname is declared... no checking for program_invocation_name... yes checking for __progname... yes checking for pthread_t... yes checking for bash... /bin/bash checking for ffs... yes checking whether ffs is declared... yes checking whether function ffs has a complete prototype... yes checking for ffsl... yes checking whether ffsl is declared... yes checking whether function ffsl has a complete prototype... yes checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for getpagesize... yes checking for memalign... yes checking for posix_memalign... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for uname... yes checking for PCIACCESS... cannot check without pkg-config checking pciaccess.h usability... no checking pciaccess.h presence... no checking for pciaccess.h... no checking CL/cl_ext.h usability... no checking CL/cl_ext.h presence... no checking for CL/cl_ext.h... no checking cuda.h usability... no checking cuda.h presence... no checking for cuda.h... no checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no checking nvml.h usability... no checking nvml.h presence... no checking for nvml.h... no checking rocm_smi/rocm_smi.h usability... no checking rocm_smi/rocm_smi.h presence... no checking for rocm_smi/rocm_smi.h... no checking X11/Xlib.h usability... no checking X11/Xlib.h presence... no checking for X11/Xlib.h... no configure: WARNING: X11 not found; GL disabled checking NVCtrl/NVCtrl.h usability... no checking NVCtrl/NVCtrl.h presence... no checking for NVCtrl/NVCtrl.h... no checking for LIBXML2... cannot check without pkg-config checking for x86 cpuid... yes checking for pthread_mutex_lock... yes checking if plugin support is enabled... no checking components to build statically... noos xml synthetic xml_nolibxml linux x86 checking components to build as plugins... sourcing /home/pbulk/build/parallel/mpi-ch/work/mpich-3.4.3/src/pm/hydra/mpichprereq checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking whether C compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf) checking whether Fortran 77 compiler accepts option -O2... no checking how to get verbose linking output from gfortran... configure: WARNING: compilation failed checking for Fortran 77 libraries of gfortran... checking whether gfortran accepts the FLIBS found by autoconf... no checking for valid entries in FLIBS... checking whether cc links with FLIBS found by autoconf... yes checking whether Fortran 77 and C objects are compatible... no checking for file... file configure: error: **** Incompatible Fortran and C Object File Types! **** F77 Object File Type produced by "gfortran -O -fallow-argument-mismatch " is : : cannot open `' (No such file or directory). C Object File Type produced by "cc -pipe -O2 -I/usr/pkg/include -I/usr/include -O2" is : : ELF 64-bit LSB relocatable, x86-64, version 1 (SYSV), not stripped. *** Error code 1 Stop. bmake[1]: stopped making "configure" in /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch *** Error code 1 Stop. bmake: stopped making "configure" in /data/jenkins/workspace/pkgsrc-el8-trunk-x86_64/parallel/mpi-ch