+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /usr/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/molsketch-0.8.1nb3/work.log
+ su pbulk -c '"$@"' make /usr/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/molsketch-0.8.1nb3/work.log
=> Bootstrap dependency digest>=20211023: found digest-20220214
=> Checksum BLAKE2s OK for Molsketch-0.8.1-src.tar.gz
=> Checksum SHA512 OK for Molsketch-0.8.1-src.tar.gz
===> Installing dependencies for molsketch-0.8.1nb3
==========================================================================
The following variables will affect the build process of this package,
molsketch-0.8.1nb3.  Their current value is shown below:

        * JPEG_DEFAULT = jpeg
        * SSLBASE (defined)
        * SSLCERTBUNDLE (not defined)
        * SSLCERTS = /usr/pkg/etc/openssl/certs
        * SSLDIR = /usr/pkg/etc/openssl
        * SSLKEYS = /usr/pkg/etc/openssl/private

Based on these variables, the following variables have been set:

        * JPEGBASE (defined, but empty)
        * JPEG_TYPE = jpeg

You may want to abort the process now with CTRL-C and change the value
of variables in the first group before continuing.  Be sure to run
`/usr/pkg/bin/bmake clean' after the changes.
==========================================================================
=> Tool dependency qt6-qttools-[0-9]*: found qt6-qttools-6.7.3
=> Tool dependency glib2-tools-[0-9]*: found glib2-tools-2.80.4
=> Tool dependency cmake>=0: found cmake-3.30.5
=> Tool dependency mktools-[0-9]*: found mktools-20220614
=> Tool dependency pkgconf-[0-9]*: found pkgconf-2.3.0
=> Tool dependency cwrappers>=20150314: found cwrappers-20220403
=> Tool dependency checkperms>=1.1: found checkperms-1.12
=> Build dependency gcc10>=10.3.0nb2: found gcc10-10.5.0nb2
=> Full dependency hicolor-icon-theme>=0.9nb1: found hicolor-icon-theme-0.17nb1
=> Full dependency openbabel>=3.1.1nb25: found openbabel-3.1.1nb27
=> Full dependency qt6-qtbase>=6.6.3nb1: found qt6-qtbase-6.7.3
=> Full dependency qt6-qtsvg>=6.6.3nb1: found qt6-qtsvg-6.7.3
=> Build dependency eigen3>=3.1.2: found eigen3-3.4.0nb1
=> Build dependency xcb-proto>=1.4: found xcb-proto-1.17.0nb1
=> Build dependency xorgproto>=2016.1: found xorgproto-2024.1
=> Full dependency MesaLib>=3.4.2: found MesaLib-21.3.9nb4
=> Full dependency brotli>=1.0.1: found brotli-1.1.0
=> Full dependency bzip2>=1.0.1: found bzip2-1.0.8
=> Full dependency cairo>=1.0.0nb2: found cairo-1.18.2
=> Full dependency dbus>=0.91: found dbus-1.14.10
=> Full dependency expat>=1.95.7: found expat-2.6.3
=> Full dependency fontconfig>=2.11.91: found fontconfig-2.15.0
=> Full dependency freetype2>=2.13.0: found freetype2-2.13.3
=> Full dependency glib2>=2.4.0: found glib2-2.80.4
=> Full dependency glu>=6.0: found glu-9.0.3
=> Full dependency graphite2>=1.2: found graphite2-1.3.14nb3
=> Full dependency harfbuzz>=2.1.1: found harfbuzz-9.0.0
=> Full dependency icu>=3.4: found icu-75.1
=> Full dependency jpeg>=8nb1: found jpeg-9f
=> Full dependency libICE>=0.99.1: found libICE-1.1.1
=> Full dependency libSM>=0.99.2: found libSM-1.2.4
=> Full dependency libX11>=1.5: found libX11-1.8.10
=> Full dependency libXau>=1.0: found libXau-1.0.11
=> Full dependency libXcursor>=1.1.1: found libXcursor-1.2.2
=> Full dependency libXdamage>=1.0.3: found libXdamage-1.1.6
=> Full dependency libXdmcp>=0.99: found libXdmcp-1.1.5
=> Full dependency libXext>=1.1: found libXext-1.3.6
=> Full dependency libXfixes>=4.0.1: found libXfixes-6.0.1
=> Full dependency libXft>=2.1.10: found libXft-2.3.8nb1
=> Full dependency libXi>=1.0.0: found libXi-1.8.2
=> Full dependency libXmu>=1.0.0: found libXmu-1.2.1
=> Full dependency libXrandr>=1.1.2: found libXrandr-1.5.4
=> Full dependency libXrender>=0.9.2: found libXrender-0.9.11
=> Full dependency libXt>=1.0.0: found libXt-1.3.0nb1
=> Full dependency libXxf86vm>=1.1.0: found libXxf86vm-1.1.5
=> Full dependency libdrm>=2.4.15: found libdrm-2.4.123
=> Full dependency libffi>=1.20: found libffi-3.4.6
=> Full dependency libproxy>=0.2.3: found libproxy-0.5.9
=> Full dependency libxcb>=1.6: found libxcb-1.17.0
=> Full dependency libxkbcommon>=0.4.0: found libxkbcommon-1.7.0nb2
=> Full dependency libxml2>=2.6.2: found libxml2-2.12.9
=> Full dependency libxshmfence>=1.2: found libxshmfence-1.3.2nb1
=> Full dependency lzo>=2.01: found lzo-2.10
=> Full dependency openssl>=1.1.1: found openssl-3.3.2
=> Full dependency pcre2>=10.21: found pcre2-10.44
=> Full dependency pixman>=0.40.0: found pixman-0.43.4
=> Full dependency png>=1.2.4: found png-1.6.44
=> Full dependency sqlite3>=3.0.8: found sqlite3-3.46.1
=> Full dependency xcb-util>=0.3.9: found xcb-util-0.4.1
=> Full dependency xcb-util-image>=0.3.9: found xcb-util-image-0.4.1
=> Full dependency xcb-util-keysyms>=0.3.9: found xcb-util-keysyms-0.4.1
=> Full dependency xcb-util-renderutil>=0.3.8nb1: found xcb-util-renderutil-0.3.10
=> Full dependency xcb-util-wm>=0.3.9: found xcb-util-wm-0.4.2nb1
=> Full dependency xz>=5.0.0: found xz-5.6.3
=> Full dependency zlib>=1.1.4: found zlib-1.3.1
===> Overriding tools for molsketch-0.8.1nb3
===> Extracting for molsketch-0.8.1nb3
===> Patching for molsketch-0.8.1nb3
===> Creating toolchain wrappers for molsketch-0.8.1nb3
===> Configuring for molsketch-0.8.1nb3
-- The C compiler identification is GNU 10.5.0
-- The CXX compiler identification is GNU 10.5.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /home/pbulk/build/biology/molsketch/work/.cwrapper/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /home/pbulk/build/biology/molsketch/work/.cwrapper/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE
-- Performing Test HAVE_STDATOMIC
-- Performing Test HAVE_STDATOMIC - Success
-- Found WrapAtomic: TRUE
-- Found OpenGL: /usr/pkg/lib/libGL.so
-- Found WrapOpenGL: TRUE
-- Found XKB: /usr/pkg/lib/libxkbcommon.so (found suitable version "1.7.0", minimum required is "0.5.0")
-- Found Cups: /usr/pkg/lib/libcups.so (found version "2.4.10")
-- ======= Welcome to Molsketch build =======
-- Sources in: /home/pbulk/build/biology/molsketch/work/Molsketch-0.8.1
-- Installation settings and corresponding cmake variables (use "-D <variableName>=<value>" to change):
--     "Global prefix": MSK_PREFIX = /usr/pkg
--     "Executable destination dir": MSK_INSTALL_BINS = /usr/pkg/bin
--     "Headers destination dir": MSK_INSTALL_INCLUDES = /usr/pkg/include
--     "Libraries (64bit) destination dir": MSK_INSTALL_LIBS64 = /usr/pkg/lib
--     "Libraries (32bit) destination dir": MSK_INSTALL_LIBS = /usr/pkg/lib
--     "Build OpenBabel interface": MSK_OBABELIFACE = true
--     "Build static application": MSK_STATIC_LIB = false
-- Found PkgConfig: /home/pbulk/build/biology/molsketch/work/.tools/bin/pkg-config (found version "2.3.0")
-- Checking for one of the modules 'openbabel-3'
-- Configuring done (4.3s)
-- Generating done (0.3s)
CMake Warning:
  Manually-specified variables were not used by the project:

    FETCHCONTENT_FULLY_DISCONNECTED
    MSK_INSTALL_DOCS
    MSK_INSTALL_PREFIX


-- Build files have been written to: /home/pbulk/build/biology/molsketch/work/Molsketch-0.8.1/cmake-pkgsrc-build