+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /usr/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/molsketch-0.8.1nb3/work.log
+ su pbulk -c '"$@"' make /usr/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/molsketch-0.8.1nb3/work.log
=> Bootstrap dependency digest>=20211023: found digest-20220214
=> Checksum BLAKE2s OK for Molsketch-0.8.1-src.tar.gz
=> Checksum SHA512 OK for Molsketch-0.8.1-src.tar.gz
===> Installing dependencies for molsketch-0.8.1nb3
==========================================================================
The following variables will affect the build process of this package,
molsketch-0.8.1nb3.  Their current value is shown below:

        * JPEG_DEFAULT = jpeg
        * SSLBASE (defined)
        * SSLCERTBUNDLE (not defined)
        * SSLCERTS = /usr/pkg/etc/openssl/certs
        * SSLDIR = /usr/pkg/etc/openssl
        * SSLKEYS = /usr/pkg/etc/openssl/private

Based on these variables, the following variables have been set:

        * JPEGBASE (defined, but empty)
        * JPEG_TYPE = jpeg

You may want to abort the process now with CTRL-C and change the value
of variables in the first group before continuing.  Be sure to run
`/usr/pkg/bin/bmake clean' after the changes.
==========================================================================
=> Tool dependency qt6-qttools-[0-9]*: found qt6-qttools-6.7.3
=> Tool dependency glib2-tools-[0-9]*: found glib2-tools-2.80.4
=> Tool dependency cmake>=0: found cmake-3.30.4
=> Tool dependency mktools-[0-9]*: found mktools-20220614
=> Tool dependency pkgconf-[0-9]*: found pkgconf-2.3.0
=> Tool dependency cwrappers>=20150314: found cwrappers-20220403
=> Tool dependency checkperms>=1.1: found checkperms-1.12
=> Build dependency xcb-proto>=1.15.2nb3: found xcb-proto-1.17.0nb1
=> Build dependency xorgproto>=2016.1: found xorgproto-2024.1
=> Build dependency eigen3>=3.1.2: found eigen3-3.4.0nb1
=> Build dependency gcc10>=10.3.0nb2: found gcc10-10.5.0nb2
=> Full dependency openbabel>=3.1.1nb25: found openbabel-3.1.1nb27
=> Full dependency hicolor-icon-theme>=0.9nb1: found hicolor-icon-theme-0.17nb1
=> Full dependency qt6-qtbase>=6.6.3nb1: found qt6-qtbase-6.7.3
=> Full dependency qt6-qtsvg>=6.6.3nb1: found qt6-qtsvg-6.7.3
===> Overriding tools for molsketch-0.8.1nb3
===> Extracting for molsketch-0.8.1nb3
===> Patching for molsketch-0.8.1nb3
===> Creating toolchain wrappers for molsketch-0.8.1nb3
===> Configuring for molsketch-0.8.1nb3
-- The C compiler identification is GNU 10.5.0
-- The CXX compiler identification is GNU 10.5.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /home/pbulk/build/biology/molsketch/work/.cwrapper/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /home/pbulk/build/biology/molsketch/work/.cwrapper/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE
-- Performing Test HAVE_STDATOMIC
-- Performing Test HAVE_STDATOMIC - Success
-- Found WrapAtomic: TRUE
-- Found OpenGL: /usr/pkg/lib/libGL.so
-- Found WrapOpenGL: TRUE
-- Found XKB: /usr/pkg/lib/libxkbcommon.so (found suitable version "1.7.0", minimum required is "0.5.0")
-- Found Cups: /usr/pkg/lib/libcups.so (found version "2.4.10")
-- ======= Welcome to Molsketch build =======
-- Sources in: /home/pbulk/build/biology/molsketch/work/Molsketch-0.8.1
-- Installation settings and corresponding cmake variables (use "-D <variableName>=<value>" to change):
--     "Global prefix": MSK_PREFIX = /usr/pkg
--     "Executable destination dir": MSK_INSTALL_BINS = /usr/pkg/bin
--     "Headers destination dir": MSK_INSTALL_INCLUDES = /usr/pkg/include
--     "Libraries (64bit) destination dir": MSK_INSTALL_LIBS64 = /usr/pkg/lib
--     "Libraries (32bit) destination dir": MSK_INSTALL_LIBS = /usr/pkg/lib
--     "Build OpenBabel interface": MSK_OBABELIFACE = true
--     "Build static application": MSK_STATIC_LIB = false
-- Found PkgConfig: /home/pbulk/build/biology/molsketch/work/.tools/bin/pkg-config (found version "2.3.0")
-- Checking for one of the modules 'openbabel-3'
-- Configuring done (2.8s)
-- Generating done (0.1s)
CMake Warning:
  Manually-specified variables were not used by the project:

    FETCHCONTENT_FULLY_DISCONNECTED
    MSK_INSTALL_DOCS
    MSK_INSTALL_PREFIX


-- Build files have been written to: /home/pbulk/build/biology/molsketch/work/Molsketch-0.8.1/cmake-pkgsrc-build