+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /usr/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=311 WRKLOG=/tmp/bulklog/sra-tools-3.0.6nb3/work.log
+ su pbulk -c '"$@"' make /usr/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=311 WRKLOG=/tmp/bulklog/sra-tools-3.0.6nb3/work.log
=> Bootstrap dependency digest>=20211023: found digest-20220214
=> Checksum BLAKE2s OK for outpaddling-ncbi-vdb-38972fc.tar.gz
=> Checksum SHA512 OK for outpaddling-ncbi-vdb-38972fc.tar.gz
=> Checksum BLAKE2s OK for sra-tools-3.0.6-984f1493e8612cd59a269569bf8c06e25e4e604c.tar.gz
=> Checksum SHA512 OK for sra-tools-3.0.6-984f1493e8612cd59a269569bf8c06e25e4e604c.tar.gz
===> Installing dependencies for sra-tools-3.0.6nb3
==========================================================================
The following variables will affect the build process of this package,
sra-tools-3.0.6nb3. Their current value is shown below:
* PYTHON_VERSION_DEFAULT = 311
Based on these variables, the following variables have been set:
* PYPACKAGE = python311
You may want to abort the process now with CTRL-C and change the value
of variables in the first group before continuing. Be sure to run
`/usr/pkg/bin/bmake clean' after the changes.
==========================================================================
=> Tool dependency cmake>=3.18: found cmake-3.29.6
=> Tool dependency mktools-[0-9]*: found mktools-20220614
=> Tool dependency bison>=1.0: found bison-3.8.2nb1
=> Tool dependency nbpatch-[0-9]*: found nbpatch-20151107
=> Tool dependency cwrappers>=20150314: found cwrappers-20220403
=> Tool dependency checkperms>=1.1: found checkperms-1.12
=> Full dependency python311>=3.11.0: found python311-3.11.9nb1
=> Full dependency libxml2>=2.10.4nb3: found libxml2-2.12.8
=> Full dependency hdf5>=1.8.11: found hdf5-1.12.2
=> Full dependency zstd>=1.3.6: found zstd-1.5.6
===> Overriding tools for sra-tools-3.0.6nb3
===> Extracting for sra-tools-3.0.6nb3
===> Patching for sra-tools-3.0.6nb3
=> Applying pkgsrc patches for sra-tools-3.0.6nb3
=> Verifying /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/biology/sra-tools/patches/patch-build_env.cmake
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/biology/sra-tools/patches/patch-build_env.cmake
Hmm... Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-build_env.cmake,v 1.1 2023/08/29 00:00:25 bacon Exp $
|
|# static standard libs are not standard nor easy to install on Alma Linux
|
|--- build/env.cmake.orig 2023-08-13 18:06:02.445968665 +0000
|+++ build/env.cmake
--------------------------
Patching file build/env.cmake using Plan A...
Hunk #1 succeeded at 555.
done
=> Verifying /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/biology/sra-tools/patches/patch-ncbi-vdb_libs_kproc_bsd_sysmgr.c
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/biology/sra-tools/patches/patch-ncbi-vdb_libs_kproc_bsd_sysmgr.c
Hmm... Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-ncbi-vdb_libs_kproc_bsd_sysmgr.c,v 1.1 2023/08/29 00:00:25 bacon Exp $
|
|# Add NetBSD pthread_main_np() stand-in
|
|--- ncbi-vdb/libs/kproc/bsd/sysmgr.c.orig 2023-08-15 12:41:59.000000000 +0000
|+++ ncbi-vdb/libs/kproc/bsd/sysmgr.c
--------------------------
Patching file ncbi-vdb/libs/kproc/bsd/sysmgr.c using Plan A...
Hunk #1 succeeded at 30.
done
=> Verifying /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/biology/sra-tools/patches/patch-ngs_ngs-java_CMakeLists.txt
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/biology/sra-tools/patches/patch-ngs_ngs-java_CMakeLists.txt
Hmm... Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-ngs_ngs-java_CMakeLists.txt,v 1.1 2023/08/29 00:00:25 bacon Exp $
|
|# Disable java
|
|--- ngs/ngs-java/CMakeLists.txt.orig 2023-08-13 21:46:05.343038455 +0000
|+++ ngs/ngs-java/CMakeLists.txt
--------------------------
Patching file ngs/ngs-java/CMakeLists.txt using Plan A...
Hunk #1 succeeded at 99.
done
=> Verifying /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/biology/sra-tools/patches/patch-tools_external_driver-tool_sratools.cpp
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/biology/sra-tools/patches/patch-tools_external_driver-tool_sratools.cpp
Hmm... Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-tools_external_driver-tool_sratools.cpp,v 1.1 2023/08/29 00:00:25 bacon Exp $
|
|# Add NetBSD pthread_main_np() stand-in
|
|--- tools/external/driver-tool/sratools.cpp.orig 2023-08-15 12:51:29.845642918 +0000
|+++ tools/external/driver-tool/sratools.cpp
--------------------------
Patching file tools/external/driver-tool/sratools.cpp using Plan A...
Hunk #1 succeeded at 578.
done
===> Creating toolchain wrappers for sra-tools-3.0.6nb3
===> Configuring for sra-tools-3.0.6nb3
=> Substituting "binpath" in tools/external/driver-tool/file-path.posix.cpp
=> Substituting "etcdir" in ncbi-vdb/libs/kfg/config.c
=> Substituting "submoddir" in CMakeLists.txt
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && cmake -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON ..
-- The C compiler identification is GNU 4.8.5
-- The CXX compiler identification is GNU 4.8.5
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Deprecation Warning at build/env.cmake:32 (cmake_policy):
The OLD behavior for policy CMP0115 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
Call Stack (most recent call first):
CMakeLists.txt:78 (include)
VERSION=3.0.6
-- Could NOT find FLEX (missing: FLEX_EXECUTABLE) (Required is at least version "2.6")
-- Found BISON: /home/pbulk/build/biology/sra-tools/work/.tools/bin/bison (found suitable version "3.8.2", minimum required is "3")
-- Found Python3: /usr/pkg/bin/python3.11 (found version "3.11.9") found components: Interpreter
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
RUN_SANITIZER_TESTS: OFF
Using local mbedtls headers from interfaces/ext/mbedtls
Building local copy ext/mbedtls...
-- Looking for gnu/libc-version.h
-- Looking for gnu/libc-version.h - not found
No mbedtls libs found installed in the system, using local copy...
-- Configuring done (2.2s)
-- Generating done (0.6s)
-- Build files have been written to: /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/bmake
/usr/pkg/bin/cmake -S/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb -B/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/pkg/bin/cmake -E cmake_progress_start /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/CMakeFiles /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build//CMakeFiles/progress.marks
/usr/pkg/bin/bmake -f CMakeFiles/Makefile2 all
/usr/pkg/bin/bmake -f libs/ktst/CMakeFiles/ktst.dir/build.make libs/ktst/CMakeFiles/ktst.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ktst /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ktst /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ktst/CMakeFiles/ktst.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/ktst/CMakeFiles/ktst.dir/build.make libs/ktst/CMakeFiles/ktst.dir/build
[ 0%] Building CXX object libs/ktst/CMakeFiles/ktst.dir/testenv.cpp.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ktst && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/c++ -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ktst\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-noexcept-type -g -std=c++11 -fPIC -rdynamic -MD -MT libs/ktst/CMakeFiles/ktst.dir/testenv.cpp.o -MF CMakeFiles/ktst.dir/testenv.cpp.o.d -o CMakeFiles/ktst.dir/testenv.cpp.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ktst/testenv.cpp
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ktst/unit_test_suite.hpp:32,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ktst/unit_test.hpp:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ktst/testenv.cpp:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
cc1plus: warning: unrecognized command line option "-Wno-noexcept-type" [enabled by default]
[ 0%] Building CXX object libs/ktst/CMakeFiles/ktst.dir/testcase.cpp.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ktst && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/c++ -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ktst\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-noexcept-type -g -std=c++11 -fPIC -rdynamic -MD -MT libs/ktst/CMakeFiles/ktst.dir/testcase.cpp.o -MF CMakeFiles/ktst.dir/testcase.cpp.o.d -o CMakeFiles/ktst.dir/testcase.cpp.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ktst/testcase.cpp
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ktst/unit_test_suite.hpp:32,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ktst/unit_test.hpp:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ktst/testcase.cpp:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
cc1plus: warning: unrecognized command line option "-Wno-noexcept-type" [enabled by default]
[ 0%] Building CXX object libs/ktst/CMakeFiles/ktst.dir/testrunner.cpp.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ktst && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/c++ -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ktst\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-noexcept-type -g -std=c++11 -fPIC -rdynamic -MD -MT libs/ktst/CMakeFiles/ktst.dir/testrunner.cpp.o -MF CMakeFiles/ktst.dir/testrunner.cpp.o.d -o CMakeFiles/ktst.dir/testrunner.cpp.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ktst/testrunner.cpp
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ktst/unit_test_suite.hpp:32,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ktst/unit_test.hpp:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ktst/testrunner.cpp:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
cc1plus: warning: unrecognized command line option "-Wno-noexcept-type" [enabled by default]
[ 0%] Building CXX object libs/ktst/CMakeFiles/ktst.dir/unix/systestenv.cpp.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ktst && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/c++ -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ktst\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-noexcept-type -g -std=c++11 -fPIC -rdynamic -MD -MT libs/ktst/CMakeFiles/ktst.dir/unix/systestenv.cpp.o -MF CMakeFiles/ktst.dir/unix/systestenv.cpp.o.d -o CMakeFiles/ktst.dir/unix/systestenv.cpp.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ktst/unix/systestenv.cpp
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ktst/unit_test_suite.hpp:32,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ktst/unix/systestenv.cpp:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
cc1plus: warning: unrecognized command line option "-Wno-noexcept-type" [enabled by default]
[ 0%] Linking CXX static library ../../lib/libktst.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ktst && /usr/pkg/bin/cmake -P CMakeFiles/ktst.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ktst && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/ktst.dir/link.txt --verbose=1
/bin/ar qc ../../lib/libktst.a CMakeFiles/ktst.dir/testenv.cpp.o CMakeFiles/ktst.dir/testcase.cpp.o CMakeFiles/ktst.dir/testrunner.cpp.o CMakeFiles/ktst.dir/unix/systestenv.cpp.o
/bin/ranlib ../../lib/libktst.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && rm -f libktst.a.3.0.6
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && mv libktst.a libktst.a.3.0.6
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libktst.a.3.0.6 libktst.a.3
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libktst.a.3 libktst.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libktst.a libktst-static.a
[ 0%] Built target ktst
/usr/pkg/bin/bmake -f libs/align/CMakeFiles/ncbi-bam.dir/build.make libs/align/CMakeFiles/ncbi-bam.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align/CMakeFiles/ncbi-bam.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/align/CMakeFiles/ncbi-bam.dir/build.make libs/align/CMakeFiles/ncbi-bam.dir/build
[ 0%] Building C object libs/align/CMakeFiles/ncbi-bam.dir/bam.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/ncbi-bam.dir/bam.c.o -MF CMakeFiles/ncbi-bam.dir/bam.c.o.d -o CMakeFiles/ncbi-bam.dir/bam.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/bam.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/bam.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 0%] Linking C static library ../../ilib/libncbi-bam.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -P CMakeFiles/ncbi-bam.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/ncbi-bam.dir/link.txt --verbose=1
/bin/ar qc ../../ilib/libncbi-bam.a "CMakeFiles/ncbi-bam.dir/bam.c.o"
/bin/ranlib ../../ilib/libncbi-bam.a
[ 0%] Built target ncbi-bam
/usr/pkg/bin/bmake -f libs/align/CMakeFiles/align-writer.dir/build.make libs/align/CMakeFiles/align-writer.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align/CMakeFiles/align-writer.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/align/CMakeFiles/align-writer.dir/build.make libs/align/CMakeFiles/align-writer.dir/build
[ 0%] Building C object libs/align/CMakeFiles/align-writer.dir/dna-reverse-cmpl.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-writer.dir/dna-reverse-cmpl.c.o -MF CMakeFiles/align-writer.dir/dna-reverse-cmpl.c.o.d -o CMakeFiles/align-writer.dir/dna-reverse-cmpl.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/dna-reverse-cmpl.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/dna-reverse-cmpl.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/reader-cmn.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-writer.dir/reader-cmn.c.o -MF CMakeFiles/align-writer.dir/reader-cmn.c.o.d -o CMakeFiles/align-writer.dir/reader-cmn.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reader-cmn.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reader-cmn.c:26:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/reference-cmn.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-writer.dir/reference-cmn.c.o -MF CMakeFiles/align-writer.dir/reference-cmn.c.o.d -o CMakeFiles/align-writer.dir/reference-cmn.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reference-cmn.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reference-cmn.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/reader-refseq.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-writer.dir/reader-refseq.c.o -MF CMakeFiles/align-writer.dir/reader-refseq.c.o.d -o CMakeFiles/align-writer.dir/reader-refseq.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reader-refseq.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reader-refseq.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/reader-wgs.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-writer.dir/reader-wgs.c.o -MF CMakeFiles/align-writer.dir/reader-wgs.c.o.d -o CMakeFiles/align-writer.dir/reader-wgs.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reader-wgs.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reader-wgs.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/refseq-mgr.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-writer.dir/refseq-mgr.c.o -MF CMakeFiles/align-writer.dir/refseq-mgr.c.o.d -o CMakeFiles/align-writer.dir/refseq-mgr.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/refseq-mgr.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/refseq-mgr.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-cmn.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-writer.dir/writer-cmn.c.o -MF CMakeFiles/align-writer.dir/writer-cmn.c.o.d -o CMakeFiles/align-writer.dir/writer-cmn.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/writer-cmn.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/writer-cmn.c:26:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-refseq.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-writer.dir/writer-refseq.c.o -MF CMakeFiles/align-writer.dir/writer-refseq.c.o.d -o CMakeFiles/align-writer.dir/writer-refseq.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/writer-refseq.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/writer-refseq.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-alignment.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-writer.dir/writer-alignment.c.o -MF CMakeFiles/align-writer.dir/writer-alignment.c.o.d -o CMakeFiles/align-writer.dir/writer-alignment.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/writer-alignment.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/writer-alignment.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-sequence.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-writer.dir/writer-sequence.c.o -MF CMakeFiles/align-writer.dir/writer-sequence.c.o.d -o CMakeFiles/align-writer.dir/writer-sequence.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/writer-sequence.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/writer-sequence.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 2%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-ref.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-writer.dir/writer-ref.c.o -MF CMakeFiles/align-writer.dir/writer-ref.c.o.d -o CMakeFiles/align-writer.dir/writer-ref.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/writer-ref.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/writer-ref.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 2%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-reference.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-writer.dir/writer-reference.c.o -MF CMakeFiles/align-writer.dir/writer-reference.c.o.d -o CMakeFiles/align-writer.dir/writer-reference.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/writer-reference.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/log.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/writer-reference.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 2%] Linking C static library ../../ilib/libalign-writer.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -P CMakeFiles/align-writer.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/align-writer.dir/link.txt --verbose=1
/bin/ar qc ../../ilib/libalign-writer.a "CMakeFiles/align-writer.dir/dna-reverse-cmpl.c.o" "CMakeFiles/align-writer.dir/reader-cmn.c.o" "CMakeFiles/align-writer.dir/reference-cmn.c.o" "CMakeFiles/align-writer.dir/reader-refseq.c.o" "CMakeFiles/align-writer.dir/reader-wgs.c.o" "CMakeFiles/align-writer.dir/refseq-mgr.c.o" "CMakeFiles/align-writer.dir/writer-cmn.c.o" "CMakeFiles/align-writer.dir/writer-refseq.c.o" "CMakeFiles/align-writer.dir/writer-alignment.c.o" "CMakeFiles/align-writer.dir/writer-sequence.c.o" "CMakeFiles/align-writer.dir/writer-ref.c.o" "CMakeFiles/align-writer.dir/writer-reference.c.o"
/bin/ranlib ../../ilib/libalign-writer.a
[ 2%] Built target align-writer
/usr/pkg/bin/bmake -f libs/align/CMakeFiles/align-access.dir/build.make libs/align/CMakeFiles/align-access.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align/CMakeFiles/align-access.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/align/CMakeFiles/align-access.dir/build.make libs/align/CMakeFiles/align-access.dir/build
[ 2%] Building C object libs/align/CMakeFiles/align-access.dir/align-access.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-access.dir/align-access.c.o -MF CMakeFiles/align-access.dir/align-access.c.o.d -o CMakeFiles/align-access.dir/align-access.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/align-access.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/align-access.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 2%] Linking C static library ../../ilib/libalign-access.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -P CMakeFiles/align-access.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/align-access.dir/link.txt --verbose=1
/bin/ar qc ../../ilib/libalign-access.a "CMakeFiles/align-access.dir/align-access.c.o"
/bin/ranlib ../../ilib/libalign-access.a
[ 2%] Built target align-access
/usr/pkg/bin/bmake -f libs/align/CMakeFiles/sam-extract.dir/build.make libs/align/CMakeFiles/sam-extract.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align/CMakeFiles/sam-extract.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/align/CMakeFiles/sam-extract.dir/build.make libs/align/CMakeFiles/sam-extract.dir/build
[ 2%] Building C object libs/align/CMakeFiles/sam-extract.dir/zz_samextract-grammar.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/sam-extract.dir/zz_samextract-grammar.c.o -MF CMakeFiles/sam-extract.dir/zz_samextract-grammar.c.o.d -o CMakeFiles/sam-extract.dir/zz_samextract-grammar.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/zz_samextract-grammar.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/align/samextract-lib.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/samextract.h:29,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/zz_samextract-grammar.c:77:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 2%] Building C object libs/align/CMakeFiles/sam-extract.dir/zz_samextract-lex.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/sam-extract.dir/zz_samextract-lex.c.o -MF CMakeFiles/sam-extract.dir/zz_samextract-lex.c.o.d -o CMakeFiles/sam-extract.dir/zz_samextract-lex.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/zz_samextract-lex.c
In file included from /usr/include/string.h:25:0,
from samextract-lex.l:38:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 2%] Building CXX object libs/align/CMakeFiles/sam-extract.dir/samextract-lib.cpp.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/c++ -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-noexcept-type -g -std=c++11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/sam-extract.dir/samextract-lib.cpp.o -MF CMakeFiles/sam-extract.dir/samextract-lib.cpp.o.d -o CMakeFiles/sam-extract.dir/samextract-lib.cpp.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/samextract-lib.cpp
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/align/samextract-lib.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/samextract.h:29,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/samextract-lib.cpp:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
cc1plus: warning: unrecognized command line option "-Wno-noexcept-type" [enabled by default]
[ 2%] Building CXX object libs/align/CMakeFiles/sam-extract.dir/samextract-bam.cpp.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/c++ -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-noexcept-type -g -std=c++11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/sam-extract.dir/samextract-bam.cpp.o -MF CMakeFiles/sam-extract.dir/samextract-bam.cpp.o.d -o CMakeFiles/sam-extract.dir/samextract-bam.cpp.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/samextract-bam.cpp
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/align/samextract-lib.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/samextract.h:29,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/samextract-bam.cpp:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
cc1plus: warning: unrecognized command line option "-Wno-noexcept-type" [enabled by default]
[ 2%] Building C object libs/align/CMakeFiles/sam-extract.dir/samextract-pool.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/sam-extract.dir/samextract-pool.c.o -MF CMakeFiles/sam-extract.dir/samextract-pool.c.o.d -o CMakeFiles/sam-extract.dir/samextract-pool.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/samextract-pool.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/align/samextract-lib.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/samextract.h:29,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/samextract-pool.h:29,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/samextract-pool.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 2%] Linking CXX static library ../../lib/libsam-extract.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -P CMakeFiles/sam-extract.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/sam-extract.dir/link.txt --verbose=1
/bin/ar qc ../../lib/libsam-extract.a "CMakeFiles/sam-extract.dir/zz_samextract-grammar.c.o" "CMakeFiles/sam-extract.dir/zz_samextract-lex.c.o" "CMakeFiles/sam-extract.dir/samextract-lib.cpp.o" "CMakeFiles/sam-extract.dir/samextract-bam.cpp.o" "CMakeFiles/sam-extract.dir/samextract-pool.c.o"
/bin/ranlib ../../lib/libsam-extract.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && rm -f libsam-extract.a.3.0.6
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && mv libsam-extract.a libsam-extract.a.3.0.6
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libsam-extract.a.3.0.6 libsam-extract.a.3
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libsam-extract.a.3 libsam-extract.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libsam-extract.a libsam-extract-static.a
[ 2%] Built target sam-extract
/usr/pkg/bin/bmake -f libs/align/CMakeFiles/align-reader.dir/build.make libs/align/CMakeFiles/align-reader.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align/CMakeFiles/align-reader.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/align/CMakeFiles/align-reader.dir/build.make libs/align/CMakeFiles/align-reader.dir/build
[ 2%] Building C object libs/align/CMakeFiles/align-reader.dir/align_mgr.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-reader.dir/align_mgr.c.o -MF CMakeFiles/align-reader.dir/align_mgr.c.o.d -o CMakeFiles/align-reader.dir/align_mgr.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/align_mgr.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/align_mgr.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 2%] Building C object libs/align/CMakeFiles/align-reader.dir/al_iterator.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-reader.dir/al_iterator.c.o -MF CMakeFiles/align-reader.dir/al_iterator.c.o.d -o CMakeFiles/align-reader.dir/al_iterator.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/al_iterator.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/al_iterator.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 2%] Building C object libs/align/CMakeFiles/align-reader.dir/unsupported_pileup_estimator.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-reader.dir/unsupported_pileup_estimator.c.o -MF CMakeFiles/align-reader.dir/unsupported_pileup_estimator.c.o.d -o CMakeFiles/align-reader.dir/unsupported_pileup_estimator.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/unsupported_pileup_estimator.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/unsupported_pileup_estimator.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 2%] Building C object libs/align/CMakeFiles/align-reader.dir/ref_iterator.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-reader.dir/ref_iterator.c.o -MF CMakeFiles/align-reader.dir/ref_iterator.c.o.d -o CMakeFiles/align-reader.dir/ref_iterator.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/ref_iterator.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/ref_iterator.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 2%] Building C object libs/align/CMakeFiles/align-reader.dir/pl_iterator.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-reader.dir/pl_iterator.c.o -MF CMakeFiles/align-reader.dir/pl_iterator.c.o.d -o CMakeFiles/align-reader.dir/pl_iterator.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/pl_iterator.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/pl_iterator.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 2%] Building C object libs/align/CMakeFiles/align-reader.dir/dna-reverse-cmpl.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-reader.dir/dna-reverse-cmpl.c.o -MF CMakeFiles/align-reader.dir/dna-reverse-cmpl.c.o.d -o CMakeFiles/align-reader.dir/dna-reverse-cmpl.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/dna-reverse-cmpl.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/dna-reverse-cmpl.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/reference-cmn.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-reader.dir/reference-cmn.c.o -MF CMakeFiles/align-reader.dir/reference-cmn.c.o.d -o CMakeFiles/align-reader.dir/reference-cmn.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reference-cmn.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reference-cmn.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/reader-cmn.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-reader.dir/reader-cmn.c.o -MF CMakeFiles/align-reader.dir/reader-cmn.c.o.d -o CMakeFiles/align-reader.dir/reader-cmn.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reader-cmn.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reader-cmn.c:26:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/reader-refseq.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-reader.dir/reader-refseq.c.o -MF CMakeFiles/align-reader.dir/reader-refseq.c.o.d -o CMakeFiles/align-reader.dir/reader-refseq.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reader-refseq.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reader-refseq.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/reader-wgs.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-reader.dir/reader-wgs.c.o -MF CMakeFiles/align-reader.dir/reader-wgs.c.o.d -o CMakeFiles/align-reader.dir/reader-wgs.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reader-wgs.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reader-wgs.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/reference.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-reader.dir/reference.c.o -MF CMakeFiles/align-reader.dir/reference.c.o.d -o CMakeFiles/align-reader.dir/reference.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reference.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reference.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/refseq-mgr.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-reader.dir/refseq-mgr.c.o -MF CMakeFiles/align-reader.dir/refseq-mgr.c.o.d -o CMakeFiles/align-reader.dir/refseq-mgr.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/refseq-mgr.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/refseq-mgr.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/quality-quantizer.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/align/CMakeFiles/align-reader.dir/quality-quantizer.c.o -MF CMakeFiles/align-reader.dir/quality-quantizer.c.o.d -o CMakeFiles/align-reader.dir/quality-quantizer.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/quality-quantizer.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/quality-quantizer.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 3%] Linking C static library ../../ilib/libalign-reader.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -P CMakeFiles/align-reader.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/align-reader.dir/link.txt --verbose=1
/bin/ar qc ../../ilib/libalign-reader.a "CMakeFiles/align-reader.dir/align_mgr.c.o" "CMakeFiles/align-reader.dir/al_iterator.c.o" "CMakeFiles/align-reader.dir/unsupported_pileup_estimator.c.o" "CMakeFiles/align-reader.dir/ref_iterator.c.o" "CMakeFiles/align-reader.dir/pl_iterator.c.o" "CMakeFiles/align-reader.dir/dna-reverse-cmpl.c.o" "CMakeFiles/align-reader.dir/reference-cmn.c.o" "CMakeFiles/align-reader.dir/reader-cmn.c.o" "CMakeFiles/align-reader.dir/reader-refseq.c.o" "CMakeFiles/align-reader.dir/reader-wgs.c.o" "CMakeFiles/align-reader.dir/reference.c.o" "CMakeFiles/align-reader.dir/refseq-mgr.c.o" "CMakeFiles/align-reader.dir/quality-quantizer.c.o"
/bin/ranlib ../../ilib/libalign-reader.a
[ 3%] Built target align-reader
/usr/pkg/bin/bmake -f libs/axf/CMakeFiles/axf.dir/build.make libs/axf/CMakeFiles/axf.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf/CMakeFiles/axf.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/axf/CMakeFiles/axf.dir/build.make libs/axf/CMakeFiles/axf.dir/build
[ 3%] Building C object libs/axf/CMakeFiles/axf.dir/ref-tbl-sub-select.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/ref-tbl-sub-select.c.o -MF CMakeFiles/axf.dir/ref-tbl-sub-select.c.o.d -o CMakeFiles/axf.dir/ref-tbl-sub-select.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-tbl-sub-select.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-tbl-sub-select.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 3%] Building C object libs/axf/CMakeFiles/axf.dir/ref-restore-read.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/ref-restore-read.c.o -MF CMakeFiles/axf.dir/ref-restore-read.c.o.d -o CMakeFiles/axf.dir/ref-restore-read.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-restore-read.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-restore-read.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 3%] Building C object libs/axf/CMakeFiles/axf.dir/align-restore-read.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/align-restore-read.c.o -MF CMakeFiles/axf.dir/align-restore-read.c.o.d -o CMakeFiles/axf.dir/align-restore-read.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-restore-read.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/insdc/insdc.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-restore-read.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 3%] Building C object libs/axf/CMakeFiles/axf.dir/raw-restore-read.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/raw-restore-read.c.o -MF CMakeFiles/axf.dir/raw-restore-read.c.o.d -o CMakeFiles/axf.dir/raw-restore-read.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/raw-restore-read.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/insdc/insdc.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/raw-restore-read.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 3%] Building C object libs/axf/CMakeFiles/axf.dir/raw-restore-qual.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/raw-restore-qual.c.o -MF CMakeFiles/axf.dir/raw-restore-qual.c.o.d -o CMakeFiles/axf.dir/raw-restore-qual.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/raw-restore-qual.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/insdc/insdc.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/raw-restore-qual.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 4%] Building C object libs/axf/CMakeFiles/axf.dir/seq-restore-read.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/seq-restore-read.c.o -MF CMakeFiles/axf.dir/seq-restore-read.c.o.d -o CMakeFiles/axf.dir/seq-restore-read.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/seq-restore-read.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/seq-restore-read.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 4%] Building C object libs/axf/CMakeFiles/axf.dir/seq-restore-linkage-group.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/seq-restore-linkage-group.c.o -MF CMakeFiles/axf.dir/seq-restore-linkage-group.c.o.d -o CMakeFiles/axf.dir/seq-restore-linkage-group.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/seq-restore-linkage-group.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/seq-restore-linkage-group.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 4%] Building C object libs/axf/CMakeFiles/axf.dir/seq-construct-read.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/seq-construct-read.c.o -MF CMakeFiles/axf.dir/seq-construct-read.c.o.d -o CMakeFiles/axf.dir/seq-construct-read.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/seq-construct-read.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/seq-construct-read.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 4%] Building C object libs/axf/CMakeFiles/axf.dir/cigar.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/cigar.c.o -MF CMakeFiles/axf.dir/cigar.c.o.d -o CMakeFiles/axf.dir/cigar.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/cigar.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/cigar.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 4%] Building C object libs/axf/CMakeFiles/axf.dir/project_read_from_sequence.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/project_read_from_sequence.c.o -MF CMakeFiles/axf.dir/project_read_from_sequence.c.o.d -o CMakeFiles/axf.dir/project_read_from_sequence.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/project_read_from_sequence.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/project_read_from_sequence.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 4%] Building C object libs/axf/CMakeFiles/axf.dir/not-my-row.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/not-my-row.c.o -MF CMakeFiles/axf.dir/not-my-row.c.o.d -o CMakeFiles/axf.dir/not-my-row.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/not-my-row.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/sra/sradb.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/not-my-row.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 4%] Building C object libs/axf/CMakeFiles/axf.dir/template-len.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/template-len.c.o -MF CMakeFiles/axf.dir/template-len.c.o.d -o CMakeFiles/axf.dir/template-len.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/template-len.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/sra/sradb.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/template-len.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 4%] Building C object libs/axf/CMakeFiles/axf.dir/get-sam-flags.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/get-sam-flags.c.o -MF CMakeFiles/axf.dir/get-sam-flags.c.o.d -o CMakeFiles/axf.dir/get-sam-flags.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/get-sam-flags.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/sra/sradb.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/get-sam-flags.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 4%] Building C object libs/axf/CMakeFiles/axf.dir/align-ref-pos.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/align-ref-pos.c.o -MF CMakeFiles/axf.dir/align-ref-pos.c.o.d -o CMakeFiles/axf.dir/align-ref-pos.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-ref-pos.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-ref-pos.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 5%] Building C object libs/axf/CMakeFiles/axf.dir/align-ref-name.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/align-ref-name.c.o -MF CMakeFiles/axf.dir/align-ref-name.c.o.d -o CMakeFiles/axf.dir/align-ref-name.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-ref-name.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-ref-name.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 5%] Building C object libs/axf/CMakeFiles/axf.dir/align-ref-seq-id.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/align-ref-seq-id.c.o -MF CMakeFiles/axf.dir/align-ref-seq-id.c.o.d -o CMakeFiles/axf.dir/align-ref-seq-id.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-ref-seq-id.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-ref-seq-id.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 5%] Building C object libs/axf/CMakeFiles/axf.dir/align-local_ref_id.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/align-local_ref_id.c.o -MF CMakeFiles/axf.dir/align-local_ref_id.c.o.d -o CMakeFiles/axf.dir/align-local_ref_id.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-local_ref_id.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-local_ref_id.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 5%] Building C object libs/axf/CMakeFiles/axf.dir/align-local_ref_start.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/align-local_ref_start.c.o -MF CMakeFiles/axf.dir/align-local_ref_start.c.o.d -o CMakeFiles/axf.dir/align-local_ref_start.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-local_ref_start.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-local_ref_start.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 5%] Building C object libs/axf/CMakeFiles/axf.dir/generate-mismatch-qual.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/generate-mismatch-qual.c.o -MF CMakeFiles/axf.dir/generate-mismatch-qual.c.o.d -o CMakeFiles/axf.dir/generate-mismatch-qual.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/generate-mismatch-qual.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/generate-mismatch-qual.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 5%] Building C object libs/axf/CMakeFiles/axf.dir/mismatch-restore-qual.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/mismatch-restore-qual.c.o -MF CMakeFiles/axf.dir/mismatch-restore-qual.c.o.d -o CMakeFiles/axf.dir/mismatch-restore-qual.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/mismatch-restore-qual.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/insdc/insdc.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/mismatch-restore-qual.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 5%] Building C object libs/axf/CMakeFiles/axf.dir/ref-preserve_qual.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/ref-preserve_qual.c.o -MF CMakeFiles/axf.dir/ref-preserve_qual.c.o.d -o CMakeFiles/axf.dir/ref-preserve_qual.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-preserve_qual.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/insdc/insdc.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-preserve_qual.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 5%] Building C object libs/axf/CMakeFiles/axf.dir/ref-tbl.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/ref-tbl.c.o -MF CMakeFiles/axf.dir/ref-tbl.c.o.d -o CMakeFiles/axf.dir/ref-tbl.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-tbl.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/database.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-tbl.c:26:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 5%] Building C object libs/axf/CMakeFiles/axf.dir/make-cmp-read_desc.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/make-cmp-read_desc.c.o -MF CMakeFiles/axf.dir/make-cmp-read_desc.c.o.d -o CMakeFiles/axf.dir/make-cmp-read_desc.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/make-cmp-read_desc.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/make-cmp-read_desc.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 6%] Building C object libs/axf/CMakeFiles/axf.dir/get_mate_align_ids.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/get_mate_align_ids.c.o -MF CMakeFiles/axf.dir/get_mate_align_ids.c.o.d -o CMakeFiles/axf.dir/get_mate_align_ids.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/get_mate_align_ids.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/get_mate_align_ids.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 6%] Building C object libs/axf/CMakeFiles/axf.dir/range-list.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/range-list.c.o -MF CMakeFiles/axf.dir/range-list.c.o.d -o CMakeFiles/axf.dir/range-list.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/range-list.c
In file included from /usr/include/stdlib.h:24:0,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/range-list.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 6%] Building C object libs/axf/CMakeFiles/axf.dir/refseq.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/refseq.c.o -MF CMakeFiles/axf.dir/refseq.c.o.d -o CMakeFiles/axf.dir/refseq.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/refseq.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/refseq.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 6%] Building C object libs/axf/CMakeFiles/axf.dir/wgs.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/wgs.c.o -MF CMakeFiles/axf.dir/wgs.c.o.d -o CMakeFiles/axf.dir/wgs.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/wgs.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/wgs.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 6%] Building C object libs/axf/CMakeFiles/axf.dir/restore-read.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/axf.dir/restore-read.c.o -MF CMakeFiles/axf.dir/restore-read.c.o.d -o CMakeFiles/axf.dir/restore-read.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/restore-read.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/restore-read.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 6%] Linking C static library ../../ilib/libaxf.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /usr/pkg/bin/cmake -P CMakeFiles/axf.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/axf.dir/link.txt --verbose=1
/bin/ar qc ../../ilib/libaxf.a "CMakeFiles/axf.dir/ref-tbl-sub-select.c.o" "CMakeFiles/axf.dir/ref-restore-read.c.o" "CMakeFiles/axf.dir/align-restore-read.c.o" "CMakeFiles/axf.dir/raw-restore-read.c.o" "CMakeFiles/axf.dir/raw-restore-qual.c.o" "CMakeFiles/axf.dir/seq-restore-read.c.o" "CMakeFiles/axf.dir/seq-restore-linkage-group.c.o" "CMakeFiles/axf.dir/seq-construct-read.c.o" CMakeFiles/axf.dir/cigar.c.o CMakeFiles/axf.dir/project_read_from_sequence.c.o "CMakeFiles/axf.dir/not-my-row.c.o" "CMakeFiles/axf.dir/template-len.c.o" "CMakeFiles/axf.dir/get-sam-flags.c.o" "CMakeFiles/axf.dir/align-ref-pos.c.o" "CMakeFiles/axf.dir/align-ref-name.c.o" "CMakeFiles/axf.dir/align-ref-seq-id.c.o" "CMakeFiles/axf.dir/align-local_ref_id.c.o" "CMakeFiles/axf.dir/align-local_ref_start.c.o" "CMakeFiles/axf.dir/generate-mismatch-qual.c.o" "CMakeFiles/axf.dir/mismatch-restore-qual.c.o" "CMakeFiles/axf.dir/ref-preserve_qual.c.o" "CMakeFiles/axf.dir/ref-tbl.c.o" "CMakeFiles/axf.dir/make-cmp-read_desc.c.o" CMakeFiles/axf.dir/get_mate_align_ids.c.o "CMakeFiles/axf.dir/range-list.c.o" CMakeFiles/axf.dir/refseq.c.o CMakeFiles/axf.dir/wgs.c.o "CMakeFiles/axf.dir/restore-read.c.o"
/bin/ranlib ../../ilib/libaxf.a
[ 6%] Built target axf
/usr/pkg/bin/bmake -f libs/axf/CMakeFiles/waxf.dir/build.make libs/axf/CMakeFiles/waxf.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf/CMakeFiles/waxf.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/axf/CMakeFiles/waxf.dir/build.make libs/axf/CMakeFiles/waxf.dir/build
[ 6%] Building C object libs/axf/CMakeFiles/waxf.dir/ref-tbl-sub-select.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/ref-tbl-sub-select.c.o -MF CMakeFiles/waxf.dir/ref-tbl-sub-select.c.o.d -o CMakeFiles/waxf.dir/ref-tbl-sub-select.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-tbl-sub-select.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-tbl-sub-select.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 6%] Building C object libs/axf/CMakeFiles/waxf.dir/ref-restore-read.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/ref-restore-read.c.o -MF CMakeFiles/waxf.dir/ref-restore-read.c.o.d -o CMakeFiles/waxf.dir/ref-restore-read.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-restore-read.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-restore-read.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 6%] Building C object libs/axf/CMakeFiles/waxf.dir/align-restore-read.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/align-restore-read.c.o -MF CMakeFiles/waxf.dir/align-restore-read.c.o.d -o CMakeFiles/waxf.dir/align-restore-read.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-restore-read.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/insdc/insdc.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-restore-read.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 6%] Building C object libs/axf/CMakeFiles/waxf.dir/raw-restore-read.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/raw-restore-read.c.o -MF CMakeFiles/waxf.dir/raw-restore-read.c.o.d -o CMakeFiles/waxf.dir/raw-restore-read.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/raw-restore-read.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/insdc/insdc.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/raw-restore-read.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 6%] Building C object libs/axf/CMakeFiles/waxf.dir/raw-restore-qual.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/raw-restore-qual.c.o -MF CMakeFiles/waxf.dir/raw-restore-qual.c.o.d -o CMakeFiles/waxf.dir/raw-restore-qual.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/raw-restore-qual.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/insdc/insdc.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/raw-restore-qual.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 6%] Building C object libs/axf/CMakeFiles/waxf.dir/seq-restore-read.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/seq-restore-read.c.o -MF CMakeFiles/waxf.dir/seq-restore-read.c.o.d -o CMakeFiles/waxf.dir/seq-restore-read.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/seq-restore-read.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/seq-restore-read.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/seq-restore-linkage-group.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/seq-restore-linkage-group.c.o -MF CMakeFiles/waxf.dir/seq-restore-linkage-group.c.o.d -o CMakeFiles/waxf.dir/seq-restore-linkage-group.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/seq-restore-linkage-group.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/seq-restore-linkage-group.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/seq-construct-read.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/seq-construct-read.c.o -MF CMakeFiles/waxf.dir/seq-construct-read.c.o.d -o CMakeFiles/waxf.dir/seq-construct-read.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/seq-construct-read.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/seq-construct-read.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/cigar.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/cigar.c.o -MF CMakeFiles/waxf.dir/cigar.c.o.d -o CMakeFiles/waxf.dir/cigar.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/cigar.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/cigar.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/project_read_from_sequence.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/project_read_from_sequence.c.o -MF CMakeFiles/waxf.dir/project_read_from_sequence.c.o.d -o CMakeFiles/waxf.dir/project_read_from_sequence.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/project_read_from_sequence.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/project_read_from_sequence.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/not-my-row.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/not-my-row.c.o -MF CMakeFiles/waxf.dir/not-my-row.c.o.d -o CMakeFiles/waxf.dir/not-my-row.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/not-my-row.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/sra/sradb.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/not-my-row.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/template-len.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/template-len.c.o -MF CMakeFiles/waxf.dir/template-len.c.o.d -o CMakeFiles/waxf.dir/template-len.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/template-len.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/sra/sradb.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/template-len.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/get-sam-flags.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/get-sam-flags.c.o -MF CMakeFiles/waxf.dir/get-sam-flags.c.o.d -o CMakeFiles/waxf.dir/get-sam-flags.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/get-sam-flags.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/sra/sradb.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/get-sam-flags.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/align-ref-pos.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/align-ref-pos.c.o -MF CMakeFiles/waxf.dir/align-ref-pos.c.o.d -o CMakeFiles/waxf.dir/align-ref-pos.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-ref-pos.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-ref-pos.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/align-ref-name.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/align-ref-name.c.o -MF CMakeFiles/waxf.dir/align-ref-name.c.o.d -o CMakeFiles/waxf.dir/align-ref-name.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-ref-name.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-ref-name.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/align-ref-seq-id.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/align-ref-seq-id.c.o -MF CMakeFiles/waxf.dir/align-ref-seq-id.c.o.d -o CMakeFiles/waxf.dir/align-ref-seq-id.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-ref-seq-id.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-ref-seq-id.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/align-local_ref_id.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/align-local_ref_id.c.o -MF CMakeFiles/waxf.dir/align-local_ref_id.c.o.d -o CMakeFiles/waxf.dir/align-local_ref_id.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-local_ref_id.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-local_ref_id.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/align-local_ref_start.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/align-local_ref_start.c.o -MF CMakeFiles/waxf.dir/align-local_ref_start.c.o.d -o CMakeFiles/waxf.dir/align-local_ref_start.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-local_ref_start.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-local_ref_start.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/generate-mismatch-qual.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/generate-mismatch-qual.c.o -MF CMakeFiles/waxf.dir/generate-mismatch-qual.c.o.d -o CMakeFiles/waxf.dir/generate-mismatch-qual.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/generate-mismatch-qual.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/generate-mismatch-qual.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/mismatch-restore-qual.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/mismatch-restore-qual.c.o -MF CMakeFiles/waxf.dir/mismatch-restore-qual.c.o.d -o CMakeFiles/waxf.dir/mismatch-restore-qual.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/mismatch-restore-qual.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/insdc/insdc.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/mismatch-restore-qual.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/ref-preserve_qual.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/ref-preserve_qual.c.o -MF CMakeFiles/waxf.dir/ref-preserve_qual.c.o.d -o CMakeFiles/waxf.dir/ref-preserve_qual.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-preserve_qual.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/insdc/insdc.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-preserve_qual.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/ref-tbl.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/ref-tbl.c.o -MF CMakeFiles/waxf.dir/ref-tbl.c.o.d -o CMakeFiles/waxf.dir/ref-tbl.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-tbl.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/database.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-tbl.c:26:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/make-cmp-read_desc.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/make-cmp-read_desc.c.o -MF CMakeFiles/waxf.dir/make-cmp-read_desc.c.o.d -o CMakeFiles/waxf.dir/make-cmp-read_desc.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/make-cmp-read_desc.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/make-cmp-read_desc.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/get_mate_align_ids.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/get_mate_align_ids.c.o -MF CMakeFiles/waxf.dir/get_mate_align_ids.c.o.d -o CMakeFiles/waxf.dir/get_mate_align_ids.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/get_mate_align_ids.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/schema.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/vdb/xform.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/get_mate_align_ids.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/range-list.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/range-list.c.o -MF CMakeFiles/waxf.dir/range-list.c.o.d -o CMakeFiles/waxf.dir/range-list.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/range-list.c
In file included from /usr/include/stdlib.h:24:0,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/range-list.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/refseq.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/refseq.c.o -MF CMakeFiles/waxf.dir/refseq.c.o.d -o CMakeFiles/waxf.dir/refseq.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/refseq.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/refseq.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/wgs.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/wgs.c.o -MF CMakeFiles/waxf.dir/wgs.c.o.d -o CMakeFiles/waxf.dir/wgs.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/wgs.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/wgs.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/restore-read.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/restore-read.c.o -MF CMakeFiles/waxf.dir/restore-read.c.o.d -o CMakeFiles/waxf.dir/restore-read.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/restore-read.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/restore-read.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/refseq-stats.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/axf/CMakeFiles/waxf.dir/refseq-stats.c.o -MF CMakeFiles/waxf.dir/refseq-stats.c.o.d -o CMakeFiles/waxf.dir/refseq-stats.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/refseq-stats.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/sra/sradb.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/refseq-stats.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 9%] Linking C static library ../../ilib/libwaxf.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /usr/pkg/bin/cmake -P CMakeFiles/waxf.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/waxf.dir/link.txt --verbose=1
/bin/ar qc ../../ilib/libwaxf.a "CMakeFiles/waxf.dir/ref-tbl-sub-select.c.o" "CMakeFiles/waxf.dir/ref-restore-read.c.o" "CMakeFiles/waxf.dir/align-restore-read.c.o" "CMakeFiles/waxf.dir/raw-restore-read.c.o" "CMakeFiles/waxf.dir/raw-restore-qual.c.o" "CMakeFiles/waxf.dir/seq-restore-read.c.o" "CMakeFiles/waxf.dir/seq-restore-linkage-group.c.o" "CMakeFiles/waxf.dir/seq-construct-read.c.o" CMakeFiles/waxf.dir/cigar.c.o CMakeFiles/waxf.dir/project_read_from_sequence.c.o "CMakeFiles/waxf.dir/not-my-row.c.o" "CMakeFiles/waxf.dir/template-len.c.o" "CMakeFiles/waxf.dir/get-sam-flags.c.o" "CMakeFiles/waxf.dir/align-ref-pos.c.o" "CMakeFiles/waxf.dir/align-ref-name.c.o" "CMakeFiles/waxf.dir/align-ref-seq-id.c.o" "CMakeFiles/waxf.dir/align-local_ref_id.c.o" "CMakeFiles/waxf.dir/align-local_ref_start.c.o" "CMakeFiles/waxf.dir/generate-mismatch-qual.c.o" "CMakeFiles/waxf.dir/mismatch-restore-qual.c.o" "CMakeFiles/waxf.dir/ref-preserve_qual.c.o" "CMakeFiles/waxf.dir/ref-tbl.c.o" "CMakeFiles/waxf.dir/make-cmp-read_desc.c.o" CMakeFiles/waxf.dir/get_mate_align_ids.c.o "CMakeFiles/waxf.dir/range-list.c.o" CMakeFiles/waxf.dir/refseq.c.o CMakeFiles/waxf.dir/wgs.c.o "CMakeFiles/waxf.dir/restore-read.c.o" "CMakeFiles/waxf.dir/refseq-stats.c.o"
/bin/ranlib ../../ilib/libwaxf.a
[ 9%] Built target waxf
/usr/pkg/bin/bmake -f libs/blast/CMakeFiles/vdb-blast.dir/build.make libs/blast/CMakeFiles/vdb-blast.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/blast /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/blast /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/blast/CMakeFiles/vdb-blast.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/blast/CMakeFiles/vdb-blast.dir/build.make libs/blast/CMakeFiles/vdb-blast.dir/build
[ 10%] Building C object libs/blast/CMakeFiles/vdb-blast.dir/blast-mgr.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/blast && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/blast\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/blast/CMakeFiles/vdb-blast.dir/blast-mgr.c.o -MF CMakeFiles/vdb-blast.dir/blast-mgr.c.o.d -o CMakeFiles/vdb-blast.dir/blast-mgr.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/blast/blast-mgr.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/printf.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/blast/blast-mgr.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/blast/blast-mgr.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 10%] Building C object libs/blast/CMakeFiles/vdb-blast.dir/reader.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/blast && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/blast\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/blast/CMakeFiles/vdb-blast.dir/reader.c.o -MF CMakeFiles/vdb-blast.dir/reader.c.o.d -o CMakeFiles/vdb-blast.dir/reader.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/blast/reader.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/printf.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/blast/blast-mgr.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/blast/reader.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 10%] Building C object libs/blast/CMakeFiles/vdb-blast.dir/reference.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/blast && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/blast\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/blast/CMakeFiles/vdb-blast.dir/reference.c.o -MF CMakeFiles/vdb-blast.dir/reference.c.o.d -o CMakeFiles/vdb-blast.dir/reference.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/blast/reference.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ncbi/vdb-blast.h:36,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/blast/reference.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/blast/reference.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 10%] Building C object libs/blast/CMakeFiles/vdb-blast.dir/run-set.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/blast && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/blast\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/blast/CMakeFiles/vdb-blast.dir/run-set.c.o -MF CMakeFiles/vdb-blast.dir/run-set.c.o.d -o CMakeFiles/vdb-blast.dir/run-set.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/blast/run-set.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/blast/reader.h:32,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/blast/run-set.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 10%] Linking C static library ../../ilib/libvdb-blast.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/blast && /usr/pkg/bin/cmake -P CMakeFiles/vdb-blast.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/blast && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/vdb-blast.dir/link.txt --verbose=1
/bin/ar qc ../../ilib/libvdb-blast.a "CMakeFiles/vdb-blast.dir/blast-mgr.c.o" "CMakeFiles/vdb-blast.dir/reader.c.o" "CMakeFiles/vdb-blast.dir/reference.c.o" "CMakeFiles/vdb-blast.dir/run-set.c.o"
/bin/ranlib ../../ilib/libvdb-blast.a
[ 10%] Built target vdb-blast
/usr/pkg/bin/bmake -f libs/cloud/CMakeFiles/cloud.dir/build.make libs/cloud/CMakeFiles/cloud.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/cloud /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud/CMakeFiles/cloud.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/cloud/CMakeFiles/cloud.dir/build.make libs/cloud/CMakeFiles/cloud.dir/build
[ 10%] Building C object libs/cloud/CMakeFiles/cloud.dir/aws-auth.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/cloud/CMakeFiles/cloud.dir/aws-auth.c.o -MF CMakeFiles/cloud.dir/aws-auth.c.o.d -o CMakeFiles/cloud.dir/aws-auth.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/cloud/aws-auth.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/cloud/aws-auth.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 10%] Building C object libs/cloud/CMakeFiles/cloud.dir/aws.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/cloud/CMakeFiles/cloud.dir/aws.c.o -MF CMakeFiles/cloud.dir/aws.c.o.d -o CMakeFiles/cloud.dir/aws.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/cloud/aws.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cloud/cloud.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cloud/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/cloud/aws.c:31:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 10%] Building C object libs/cloud/CMakeFiles/cloud.dir/cloud-cmn.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/cloud/CMakeFiles/cloud.dir/cloud-cmn.c.o -MF CMakeFiles/cloud.dir/cloud-cmn.c.o.d -o CMakeFiles/cloud.dir/cloud-cmn.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/cloud/cloud-cmn.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/cloud/cloud-cmn.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 11%] Building C object libs/cloud/CMakeFiles/cloud.dir/cloud-mgr.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/cloud/CMakeFiles/cloud.dir/cloud-mgr.c.o -MF CMakeFiles/cloud.dir/cloud-mgr.c.o.d -o CMakeFiles/cloud.dir/cloud-mgr.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/cloud/cloud-mgr.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/refcount.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/refcount-impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/cloud/cloud-mgr.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 11%] Building C object libs/cloud/CMakeFiles/cloud.dir/cloud.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/cloud/CMakeFiles/cloud.dir/cloud.c.o -MF CMakeFiles/cloud.dir/cloud.c.o.d -o CMakeFiles/cloud.dir/cloud.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/cloud/cloud.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cloud/cloud.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cloud/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/cloud/cloud.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 11%] Building C object libs/cloud/CMakeFiles/cloud.dir/gcp-authentication.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/cloud/CMakeFiles/cloud.dir/gcp-authentication.c.o -MF CMakeFiles/cloud.dir/gcp-authentication.c.o.d -o CMakeFiles/cloud.dir/gcp-authentication.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/cloud/gcp-authentication.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/base64.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/cloud/gcp-authentication.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 11%] Building C object libs/cloud/CMakeFiles/cloud.dir/gcp.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/cloud/CMakeFiles/cloud.dir/gcp.c.o -MF CMakeFiles/cloud.dir/gcp.c.o.d -o CMakeFiles/cloud.dir/gcp.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/cloud/gcp.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cloud/cloud.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cloud/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/cloud/gcp.c:31:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 11%] Linking C static library ../../ilib/libcloud.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud && /usr/pkg/bin/cmake -P CMakeFiles/cloud.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/cloud.dir/link.txt --verbose=1
/bin/ar qc ../../ilib/libcloud.a "CMakeFiles/cloud.dir/aws-auth.c.o" CMakeFiles/cloud.dir/aws.c.o "CMakeFiles/cloud.dir/cloud-cmn.c.o" "CMakeFiles/cloud.dir/cloud-mgr.c.o" CMakeFiles/cloud.dir/cloud.c.o "CMakeFiles/cloud.dir/gcp-authentication.c.o" CMakeFiles/cloud.dir/gcp.c.o
/bin/ranlib ../../ilib/libcloud.a
[ 11%] Built target cloud
/usr/pkg/bin/bmake -f libs/ext/bzip2/CMakeFiles/bz2.dir/build.make libs/ext/bzip2/CMakeFiles/bz2.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2 /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/bzip2 /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/bzip2/CMakeFiles/bz2.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/ext/bzip2/CMakeFiles/bz2.dir/build.make libs/ext/bzip2/CMakeFiles/bz2.dir/build
[ 11%] Building C object libs/ext/bzip2/CMakeFiles/bz2.dir/blocksort.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/bzip2 && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/bzip2\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/bzip2/CMakeFiles/bz2.dir/blocksort.c.o -MF CMakeFiles/bz2.dir/blocksort.c.o.d -o CMakeFiles/bz2.dir/blocksort.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/blocksort.c
In file included from /usr/include/stdlib.h:24:0,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/bzlib_private.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/blocksort.c:22:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 11%] Building C object libs/ext/bzip2/CMakeFiles/bz2.dir/huffman.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/bzip2 && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/bzip2\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/bzip2/CMakeFiles/bz2.dir/huffman.c.o -MF CMakeFiles/bz2.dir/huffman.c.o.d -o CMakeFiles/bz2.dir/huffman.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/huffman.c
In file included from /usr/include/stdlib.h:24:0,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/bzlib_private.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/huffman.c:22:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 12%] Building C object libs/ext/bzip2/CMakeFiles/bz2.dir/crctable.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/bzip2 && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/bzip2\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/bzip2/CMakeFiles/bz2.dir/crctable.c.o -MF CMakeFiles/bz2.dir/crctable.c.o.d -o CMakeFiles/bz2.dir/crctable.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/crctable.c
In file included from /usr/include/stdlib.h:24:0,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/bzlib_private.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/crctable.c:22:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 12%] Building C object libs/ext/bzip2/CMakeFiles/bz2.dir/randtable.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/bzip2 && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/bzip2\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/bzip2/CMakeFiles/bz2.dir/randtable.c.o -MF CMakeFiles/bz2.dir/randtable.c.o.d -o CMakeFiles/bz2.dir/randtable.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/randtable.c
In file included from /usr/include/stdlib.h:24:0,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/bzlib_private.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/randtable.c:22:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 12%] Building C object libs/ext/bzip2/CMakeFiles/bz2.dir/compress.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/bzip2 && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/bzip2\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/bzip2/CMakeFiles/bz2.dir/compress.c.o -MF CMakeFiles/bz2.dir/compress.c.o.d -o CMakeFiles/bz2.dir/compress.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/compress.c
In file included from /usr/include/stdlib.h:24:0,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/bzlib_private.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/compress.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 12%] Building C object libs/ext/bzip2/CMakeFiles/bz2.dir/decompress.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/bzip2 && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/bzip2\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/bzip2/CMakeFiles/bz2.dir/decompress.c.o -MF CMakeFiles/bz2.dir/decompress.c.o.d -o CMakeFiles/bz2.dir/decompress.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/decompress.c
In file included from /usr/include/stdlib.h:24:0,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/bzlib_private.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/decompress.c:22:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 12%] Building C object libs/ext/bzip2/CMakeFiles/bz2.dir/bzlib.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/bzip2 && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/bzip2\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/bzip2/CMakeFiles/bz2.dir/bzlib.c.o -MF CMakeFiles/bz2.dir/bzlib.c.o.d -o CMakeFiles/bz2.dir/bzlib.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/bzlib.c
In file included from /usr/include/stdlib.h:24:0,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/bzlib_private.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/bzip2/bzlib.c:31:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 12%] Linking C static library ../../../ilib/libbz2.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/bzip2 && /usr/pkg/bin/cmake -P CMakeFiles/bz2.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/bzip2 && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/bz2.dir/link.txt --verbose=1
/bin/ar qc ../../../ilib/libbz2.a CMakeFiles/bz2.dir/blocksort.c.o CMakeFiles/bz2.dir/huffman.c.o CMakeFiles/bz2.dir/crctable.c.o CMakeFiles/bz2.dir/randtable.c.o CMakeFiles/bz2.dir/compress.c.o CMakeFiles/bz2.dir/decompress.c.o CMakeFiles/bz2.dir/bzlib.c.o
/bin/ranlib ../../../ilib/libbz2.a
[ 12%] Built target bz2
/usr/pkg/bin/bmake -f libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/build.make libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/build.make libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/build
[ 12%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/aes.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/aes.c.o -MF CMakeFiles/mbedcrypto.dir/aes.c.o.d -o CMakeFiles/mbedcrypto.dir/aes.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/aes.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/aes.c:26:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 13%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/aesni.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/aesni.c.o -MF CMakeFiles/mbedcrypto.dir/aesni.c.o.d -o CMakeFiles/mbedcrypto.dir/aesni.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/aesni.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/aesni.c:25:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 13%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/aria.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/aria.c.o -MF CMakeFiles/mbedcrypto.dir/aria.c.o.d -o CMakeFiles/mbedcrypto.dir/aria.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/aria.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/aria.c:26:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 13%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/asn1parse.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/asn1parse.c.o -MF CMakeFiles/mbedcrypto.dir/asn1parse.c.o.d -o CMakeFiles/mbedcrypto.dir/asn1parse.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/asn1parse.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/asn1parse.c:20:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 13%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/asn1write.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/asn1write.c.o -MF CMakeFiles/mbedcrypto.dir/asn1write.c.o.d -o CMakeFiles/mbedcrypto.dir/asn1write.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/asn1write.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/asn1write.c:20:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 13%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/base64.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/base64.c.o -MF CMakeFiles/mbedcrypto.dir/base64.c.o.d -o CMakeFiles/mbedcrypto.dir/base64.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/base64.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/base64.c:20:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 13%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/bignum.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/bignum.c.o -MF CMakeFiles/mbedcrypto.dir/bignum.c.o.d -o CMakeFiles/mbedcrypto.dir/bignum.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/bignum.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/bignum.c:36:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 13%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/camellia.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/camellia.c.o -MF CMakeFiles/mbedcrypto.dir/camellia.c.o.d -o CMakeFiles/mbedcrypto.dir/camellia.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/camellia.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/camellia.c:26:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 13%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ccm.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ccm.c.o -MF CMakeFiles/mbedcrypto.dir/ccm.c.o.d -o CMakeFiles/mbedcrypto.dir/ccm.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ccm.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ccm.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 13%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/chacha20.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/chacha20.c.o -MF CMakeFiles/mbedcrypto.dir/chacha20.c.o.d -o CMakeFiles/mbedcrypto.dir/chacha20.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/chacha20.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/chacha20.c:24:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 14%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/chachapoly.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/chachapoly.c.o -MF CMakeFiles/mbedcrypto.dir/chachapoly.c.o.d -o CMakeFiles/mbedcrypto.dir/chachapoly.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/chachapoly.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/chachapoly.c:21:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 14%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/cipher.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/cipher.c.o -MF CMakeFiles/mbedcrypto.dir/cipher.c.o.d -o CMakeFiles/mbedcrypto.dir/cipher.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/cipher.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/cipher.c:24:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 14%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/cipher_wrap.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/cipher_wrap.c.o -MF CMakeFiles/mbedcrypto.dir/cipher_wrap.c.o.d -o CMakeFiles/mbedcrypto.dir/cipher_wrap.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/cipher_wrap.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/cipher_wrap.c:24:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 14%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/cmac.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/cmac.c.o -MF CMakeFiles/mbedcrypto.dir/cmac.c.o.d -o CMakeFiles/mbedcrypto.dir/cmac.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/cmac.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/cmac.c:41:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 14%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/constant_time.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/constant_time.c.o -MF CMakeFiles/mbedcrypto.dir/constant_time.c.o.d -o CMakeFiles/mbedcrypto.dir/constant_time.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/constant_time.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/constant_time.c:25:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 14%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ctr_drbg.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ctr_drbg.c.o -MF CMakeFiles/mbedcrypto.dir/ctr_drbg.c.o.d -o CMakeFiles/mbedcrypto.dir/ctr_drbg.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ctr_drbg.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ctr_drbg.c:25:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 14%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/des.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/des.c.o -MF CMakeFiles/mbedcrypto.dir/des.c.o.d -o CMakeFiles/mbedcrypto.dir/des.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/des.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/des.c:26:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 14%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/dhm.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/dhm.c.o -MF CMakeFiles/mbedcrypto.dir/dhm.c.o.d -o CMakeFiles/mbedcrypto.dir/dhm.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/dhm.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/dhm.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 15%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ecdh.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ecdh.c.o -MF CMakeFiles/mbedcrypto.dir/ecdh.c.o.d -o CMakeFiles/mbedcrypto.dir/ecdh.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ecdh.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ecdh.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 15%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ecdsa.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ecdsa.c.o -MF CMakeFiles/mbedcrypto.dir/ecdsa.c.o.d -o CMakeFiles/mbedcrypto.dir/ecdsa.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ecdsa.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ecdsa.c:26:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 15%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ecjpake.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ecjpake.c.o -MF CMakeFiles/mbedcrypto.dir/ecjpake.c.o.d -o CMakeFiles/mbedcrypto.dir/ecjpake.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ecjpake.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ecjpake.c:25:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 15%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ecp.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ecp.c.o -MF CMakeFiles/mbedcrypto.dir/ecp.c.o.d -o CMakeFiles/mbedcrypto.dir/ecp.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ecp.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ecp.c:42:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 15%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ecp_curves.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ecp_curves.c.o -MF CMakeFiles/mbedcrypto.dir/ecp_curves.c.o.d -o CMakeFiles/mbedcrypto.dir/ecp_curves.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ecp_curves.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ecp_curves.c:20:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 15%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/entropy.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/entropy.c.o -MF CMakeFiles/mbedcrypto.dir/entropy.c.o.d -o CMakeFiles/mbedcrypto.dir/entropy.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/entropy.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/entropy.c:20:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 15%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/entropy_poll.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/entropy_poll.c.o -MF CMakeFiles/mbedcrypto.dir/entropy_poll.c.o.d -o CMakeFiles/mbedcrypto.dir/entropy_poll.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/entropy_poll.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/entropy_poll.c:25:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 15%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/error.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/error.c.o -MF CMakeFiles/mbedcrypto.dir/error.c.o.d -o CMakeFiles/mbedcrypto.dir/error.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/error.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/error.c:20:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 15%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/gcm.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/gcm.c.o -MF CMakeFiles/mbedcrypto.dir/gcm.c.o.d -o CMakeFiles/mbedcrypto.dir/gcm.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/gcm.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/gcm.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 16%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/hmac_drbg.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/hmac_drbg.c.o -MF CMakeFiles/mbedcrypto.dir/hmac_drbg.c.o.d -o CMakeFiles/mbedcrypto.dir/hmac_drbg.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/hmac_drbg.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/hmac_drbg.c:26:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 16%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/md.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/md.c.o -MF CMakeFiles/mbedcrypto.dir/md.c.o.d -o CMakeFiles/mbedcrypto.dir/md.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/md.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/md.c:24:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 16%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/md5.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/md5.c.o -MF CMakeFiles/mbedcrypto.dir/md5.c.o.d -o CMakeFiles/mbedcrypto.dir/md5.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/md5.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/md5.c:25:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 16%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/nist_kw.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/nist_kw.c.o -MF CMakeFiles/mbedcrypto.dir/nist_kw.c.o.d -o CMakeFiles/mbedcrypto.dir/nist_kw.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/nist_kw.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/nist_kw.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 16%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/oid.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/oid.c.o -MF CMakeFiles/mbedcrypto.dir/oid.c.o.d -o CMakeFiles/mbedcrypto.dir/oid.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/oid.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/oid.c:22:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 16%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/padlock.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/padlock.c.o -MF CMakeFiles/mbedcrypto.dir/padlock.c.o.d -o CMakeFiles/mbedcrypto.dir/padlock.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/padlock.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/padlock.c:26:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 16%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pem.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pem.c.o -MF CMakeFiles/mbedcrypto.dir/pem.c.o.d -o CMakeFiles/mbedcrypto.dir/pem.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/pem.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/pem.c:20:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 16%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pk.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pk.c.o -MF CMakeFiles/mbedcrypto.dir/pk.c.o.d -o CMakeFiles/mbedcrypto.dir/pk.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/pk.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/pk.c:20:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 16%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pk_wrap.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pk_wrap.c.o -MF CMakeFiles/mbedcrypto.dir/pk_wrap.c.o.d -o CMakeFiles/mbedcrypto.dir/pk_wrap.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/pk_wrap.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/pk_wrap.c:20:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pkcs12.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pkcs12.c.o -MF CMakeFiles/mbedcrypto.dir/pkcs12.c.o.d -o CMakeFiles/mbedcrypto.dir/pkcs12.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/pkcs12.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/pkcs12.c:26:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pkcs5.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pkcs5.c.o -MF CMakeFiles/mbedcrypto.dir/pkcs5.c.o.d -o CMakeFiles/mbedcrypto.dir/pkcs5.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/pkcs5.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/pkcs5.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pkparse.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pkparse.c.o -MF CMakeFiles/mbedcrypto.dir/pkparse.c.o.d -o CMakeFiles/mbedcrypto.dir/pkparse.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/pkparse.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/pkparse.c:20:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pkwrite.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pkwrite.c.o -MF CMakeFiles/mbedcrypto.dir/pkwrite.c.o.d -o CMakeFiles/mbedcrypto.dir/pkwrite.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/pkwrite.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/pkwrite.c:20:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/platform.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/platform.c.o -MF CMakeFiles/mbedcrypto.dir/platform.c.o.d -o CMakeFiles/mbedcrypto.dir/platform.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/platform.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/platform.c:20:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/platform_util.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/platform_util.c.o -MF CMakeFiles/mbedcrypto.dir/platform_util.c.o.d -o CMakeFiles/mbedcrypto.dir/platform_util.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/platform_util.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/platform_util.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/poly1305.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/poly1305.c.o -MF CMakeFiles/mbedcrypto.dir/poly1305.c.o.d -o CMakeFiles/mbedcrypto.dir/poly1305.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/poly1305.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/poly1305.c:21:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto.c.o -MF CMakeFiles/mbedcrypto.dir/psa_crypto.c.o.d -o CMakeFiles/mbedcrypto.dir/psa_crypto.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto.c:21:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_client.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_client.c.o -MF CMakeFiles/mbedcrypto.dir/psa_crypto_client.c.o.d -o CMakeFiles/mbedcrypto.dir/psa_crypto_client.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_client.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_client.c:21:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 18%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_driver_wrappers.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_driver_wrappers.c.o -MF CMakeFiles/mbedcrypto.dir/psa_crypto_driver_wrappers.c.o.d -o CMakeFiles/mbedcrypto.dir/psa_crypto_driver_wrappers.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_driver_wrappers.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_driver_wrappers.c:22:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 18%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_slot_management.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_slot_management.c.o -MF CMakeFiles/mbedcrypto.dir/psa_crypto_slot_management.c.o.d -o CMakeFiles/mbedcrypto.dir/psa_crypto_slot_management.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_slot_management.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_slot_management.c:21:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 18%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_storage.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_storage.c.o -MF CMakeFiles/mbedcrypto.dir/psa_crypto_storage.c.o.d -o CMakeFiles/mbedcrypto.dir/psa_crypto_storage.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_storage.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_storage.c:21:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 18%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_its_file.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_its_file.c.o -MF CMakeFiles/mbedcrypto.dir/psa_its_file.c.o.d -o CMakeFiles/mbedcrypto.dir/psa_its_file.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_its_file.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_its_file.c:21:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 18%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_rsa.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_rsa.c.o -MF CMakeFiles/mbedcrypto.dir/psa_crypto_rsa.c.o.d -o CMakeFiles/mbedcrypto.dir/psa_crypto_rsa.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_rsa.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_rsa.c:21:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 18%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_mac.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_mac.c.o -MF CMakeFiles/mbedcrypto.dir/psa_crypto_mac.c.o.d -o CMakeFiles/mbedcrypto.dir/psa_crypto_mac.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_mac.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_mac.c:21:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 18%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_ecp.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_ecp.c.o -MF CMakeFiles/mbedcrypto.dir/psa_crypto_ecp.c.o.d -o CMakeFiles/mbedcrypto.dir/psa_crypto_ecp.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_ecp.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_ecp.c:21:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 18%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_hash.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_hash.c.o -MF CMakeFiles/mbedcrypto.dir/psa_crypto_hash.c.o.d -o CMakeFiles/mbedcrypto.dir/psa_crypto_hash.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_hash.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_hash.c:21:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 19%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_cipher.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_cipher.c.o -MF CMakeFiles/mbedcrypto.dir/psa_crypto_cipher.c.o.d -o CMakeFiles/mbedcrypto.dir/psa_crypto_cipher.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_cipher.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_cipher.c:21:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 19%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_aead.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_aead.c.o -MF CMakeFiles/mbedcrypto.dir/psa_crypto_aead.c.o.d -o CMakeFiles/mbedcrypto.dir/psa_crypto_aead.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_aead.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_aead.c:21:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 19%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_se.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_se.c.o -MF CMakeFiles/mbedcrypto.dir/psa_crypto_se.c.o.d -o CMakeFiles/mbedcrypto.dir/psa_crypto_se.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_se.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/psa_crypto_se.c:21:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 19%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ripemd160.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ripemd160.c.o -MF CMakeFiles/mbedcrypto.dir/ripemd160.c.o.d -o CMakeFiles/mbedcrypto.dir/ripemd160.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ripemd160.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ripemd160.c:26:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 19%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/rsa.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/rsa.c.o -MF CMakeFiles/mbedcrypto.dir/rsa.c.o.d -o CMakeFiles/mbedcrypto.dir/rsa.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/rsa.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/rsa.c:38:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 19%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/rsa_alt_helpers.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/rsa_alt_helpers.c.o -MF CMakeFiles/mbedcrypto.dir/rsa_alt_helpers.c.o.d -o CMakeFiles/mbedcrypto.dir/rsa_alt_helpers.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/rsa_alt_helpers.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/rsa_alt_helpers.c:21:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 19%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/sha1.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/sha1.c.o -MF CMakeFiles/mbedcrypto.dir/sha1.c.o.d -o CMakeFiles/mbedcrypto.dir/sha1.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/sha1.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/sha1.c:25:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 19%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/sha256.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/sha256.c.o -MF CMakeFiles/mbedcrypto.dir/sha256.c.o.d -o CMakeFiles/mbedcrypto.dir/sha256.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/sha256.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/sha256.c:25:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 19%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/sha512.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/sha512.c.o -MF CMakeFiles/mbedcrypto.dir/sha512.c.o.d -o CMakeFiles/mbedcrypto.dir/sha512.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/sha512.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/sha512.c:25:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 20%] Linking C static library ../../../ilib/libmbedcrypto.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /usr/pkg/bin/cmake -P CMakeFiles/mbedcrypto.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/mbedcrypto.dir/link.txt --verbose=1
/bin/ar qc ../../../ilib/libmbedcrypto.a CMakeFiles/mbedcrypto.dir/aes.c.o CMakeFiles/mbedcrypto.dir/aesni.c.o CMakeFiles/mbedcrypto.dir/aria.c.o CMakeFiles/mbedcrypto.dir/asn1parse.c.o CMakeFiles/mbedcrypto.dir/asn1write.c.o CMakeFiles/mbedcrypto.dir/base64.c.o CMakeFiles/mbedcrypto.dir/bignum.c.o CMakeFiles/mbedcrypto.dir/camellia.c.o CMakeFiles/mbedcrypto.dir/ccm.c.o CMakeFiles/mbedcrypto.dir/chacha20.c.o CMakeFiles/mbedcrypto.dir/chachapoly.c.o CMakeFiles/mbedcrypto.dir/cipher.c.o CMakeFiles/mbedcrypto.dir/cipher_wrap.c.o CMakeFiles/mbedcrypto.dir/cmac.c.o CMakeFiles/mbedcrypto.dir/constant_time.c.o CMakeFiles/mbedcrypto.dir/ctr_drbg.c.o CMakeFiles/mbedcrypto.dir/des.c.o CMakeFiles/mbedcrypto.dir/dhm.c.o CMakeFiles/mbedcrypto.dir/ecdh.c.o CMakeFiles/mbedcrypto.dir/ecdsa.c.o CMakeFiles/mbedcrypto.dir/ecjpake.c.o CMakeFiles/mbedcrypto.dir/ecp.c.o CMakeFiles/mbedcrypto.dir/ecp_curves.c.o CMakeFiles/mbedcrypto.dir/entropy.c.o CMakeFiles/mbedcrypto.dir/entropy_poll.c.o CMakeFiles/mbedcrypto.dir/error.c.o CMakeFiles/mbedcrypto.dir/gcm.c.o CMakeFiles/mbedcrypto.dir/hmac_drbg.c.o CMakeFiles/mbedcrypto.dir/md.c.o CMakeFiles/mbedcrypto.dir/md5.c.o CMakeFiles/mbedcrypto.dir/nist_kw.c.o CMakeFiles/mbedcrypto.dir/oid.c.o CMakeFiles/mbedcrypto.dir/padlock.c.o CMakeFiles/mbedcrypto.dir/pem.c.o CMakeFiles/mbedcrypto.dir/pk.c.o CMakeFiles/mbedcrypto.dir/pk_wrap.c.o CMakeFiles/mbedcrypto.dir/pkcs12.c.o CMakeFiles/mbedcrypto.dir/pkcs5.c.o CMakeFiles/mbedcrypto.dir/pkparse.c.o CMakeFiles/mbedcrypto.dir/pkwrite.c.o CMakeFiles/mbedcrypto.dir/platform.c.o CMakeFiles/mbedcrypto.dir/platform_util.c.o CMakeFiles/mbedcrypto.dir/poly1305.c.o CMakeFiles/mbedcrypto.dir/psa_crypto.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_client.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_driver_wrappers.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_slot_management.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_storage.c.o CMakeFiles/mbedcrypto.dir/psa_its_file.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_rsa.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_mac.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_ecp.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_hash.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_cipher.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_aead.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_se.c.o CMakeFiles/mbedcrypto.dir/ripemd160.c.o CMakeFiles/mbedcrypto.dir/rsa.c.o CMakeFiles/mbedcrypto.dir/rsa_alt_helpers.c.o CMakeFiles/mbedcrypto.dir/sha1.c.o CMakeFiles/mbedcrypto.dir/sha256.c.o CMakeFiles/mbedcrypto.dir/sha512.c.o
/bin/ranlib ../../../ilib/libmbedcrypto.a
[ 20%] Built target mbedcrypto
/usr/pkg/bin/bmake -f libs/ext/mbedtls/CMakeFiles/mbedx509.dir/build.make libs/ext/mbedtls/CMakeFiles/mbedx509.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls/CMakeFiles/mbedx509.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/ext/mbedtls/CMakeFiles/mbedx509.dir/build.make libs/ext/mbedtls/CMakeFiles/mbedx509.dir/build
[ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedx509.dir/x509_crt.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedx509.dir/x509_crt.c.o -MF CMakeFiles/mbedx509.dir/x509_crt.c.o.d -o CMakeFiles/mbedx509.dir/x509_crt.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/x509_crt.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/x509_crt.c:32:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedx509.dir/x509.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedx509.dir/x509.c.o -MF CMakeFiles/mbedx509.dir/x509.c.o.d -o CMakeFiles/mbedx509.dir/x509.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/x509.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/x509.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 20%] Linking C static library ../../../ilib/libmbedx509.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /usr/pkg/bin/cmake -P CMakeFiles/mbedx509.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/mbedx509.dir/link.txt --verbose=1
/bin/ar qc ../../../ilib/libmbedx509.a CMakeFiles/mbedx509.dir/x509_crt.c.o CMakeFiles/mbedx509.dir/x509.c.o
/bin/ranlib ../../../ilib/libmbedx509.a
[ 20%] Built target mbedx509
/usr/pkg/bin/bmake -f libs/ext/mbedtls/CMakeFiles/mbedtls.dir/build.make libs/ext/mbedtls/CMakeFiles/mbedtls.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls/CMakeFiles/mbedtls.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/ext/mbedtls/CMakeFiles/mbedtls.dir/build.make libs/ext/mbedtls/CMakeFiles/mbedtls.dir/build
[ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/debug.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedtls.dir/debug.c.o -MF CMakeFiles/mbedtls.dir/debug.c.o.d -o CMakeFiles/mbedtls.dir/debug.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/debug.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/debug.c:20:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_ciphersuites.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_ciphersuites.c.o -MF CMakeFiles/mbedtls.dir/ssl_ciphersuites.c.o.d -o CMakeFiles/mbedtls.dir/ssl_ciphersuites.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ssl_ciphersuites.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ssl_ciphersuites.c:22:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_client.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_client.c.o -MF CMakeFiles/mbedtls.dir/ssl_client.c.o.d -o CMakeFiles/mbedtls.dir/ssl_client.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ssl_client.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ssl_client.c:22:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_msg.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_msg.c.o -MF CMakeFiles/mbedtls.dir/ssl_msg.c.o.d -o CMakeFiles/mbedtls.dir/ssl_msg.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ssl_msg.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ssl_msg.c:25:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_tls.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_tls.c.o -MF CMakeFiles/mbedtls.dir/ssl_tls.c.o.d -o CMakeFiles/mbedtls.dir/ssl_tls.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ssl_tls.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ssl_tls.c:24:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_tls12_client.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_tls12_client.c.o -MF CMakeFiles/mbedtls.dir/ssl_tls12_client.c.o.d -o CMakeFiles/mbedtls.dir/ssl_tls12_client.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ssl_tls12_client.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ssl_tls12_client.c:20:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_tls12_server.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_tls12_server.c.o -MF CMakeFiles/mbedtls.dir/ssl_tls12_server.c.o.d -o CMakeFiles/mbedtls.dir/ssl_tls12_server.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ssl_tls12_server.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ssl_tls12_server.c:20:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_tls13_keys.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_tls13_keys.c.o -MF CMakeFiles/mbedtls.dir/ssl_tls13_keys.c.o.d -o CMakeFiles/mbedtls.dir/ssl_tls13_keys.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ssl_tls13_keys.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ssl_tls13_keys.c:20:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 21%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_debug_helpers_generated.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_debug_helpers_generated.c.o -MF CMakeFiles/mbedtls.dir/ssl_debug_helpers_generated.c.o.d -o CMakeFiles/mbedtls.dir/ssl_debug_helpers_generated.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ssl_debug_helpers_generated.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/check_config.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls/mbedtls/build_info.h:84,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/common.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/ssl_debug_helpers_generated.c:25:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 21%] Linking C static library ../../../ilib/libmbedtls.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /usr/pkg/bin/cmake -P CMakeFiles/mbedtls.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/mbedtls.dir/link.txt --verbose=1
/bin/ar qc ../../../ilib/libmbedtls.a CMakeFiles/mbedtls.dir/debug.c.o CMakeFiles/mbedtls.dir/ssl_ciphersuites.c.o CMakeFiles/mbedtls.dir/ssl_client.c.o CMakeFiles/mbedtls.dir/ssl_msg.c.o CMakeFiles/mbedtls.dir/ssl_tls.c.o CMakeFiles/mbedtls.dir/ssl_tls12_client.c.o CMakeFiles/mbedtls.dir/ssl_tls12_server.c.o CMakeFiles/mbedtls.dir/ssl_tls13_keys.c.o CMakeFiles/mbedtls.dir/ssl_debug_helpers_generated.c.o
/bin/ranlib ../../../ilib/libmbedtls.a
[ 21%] Built target mbedtls
/usr/pkg/bin/bmake -f libs/ext/zlib/CMakeFiles/z.dir/build.make libs/ext/zlib/CMakeFiles/z.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib/CMakeFiles/z.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/ext/zlib/CMakeFiles/z.dir/build.make libs/ext/zlib/CMakeFiles/z.dir/build
[ 22%] Building C object libs/ext/zlib/CMakeFiles/z.dir/adler32.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/zlib/CMakeFiles/z.dir/adler32.c.o -MF CMakeFiles/z.dir/adler32.c.o.d -o CMakeFiles/z.dir/adler32.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/adler32.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zconf.h:424,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zlib.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zutil.h:22,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/adler32.c:8:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 22%] Building C object libs/ext/zlib/CMakeFiles/z.dir/compress.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/zlib/CMakeFiles/z.dir/compress.c.o -MF CMakeFiles/z.dir/compress.c.o.d -o CMakeFiles/z.dir/compress.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/compress.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zconf.h:424,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zlib.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/compress.c:9:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 22%] Building C object libs/ext/zlib/CMakeFiles/z.dir/crc32.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/zlib/CMakeFiles/z.dir/crc32.c.o -MF CMakeFiles/z.dir/crc32.c.o.d -o CMakeFiles/z.dir/crc32.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/crc32.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zconf.h:424,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zlib.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zutil.h:22,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/crc32.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 22%] Building C object libs/ext/zlib/CMakeFiles/z.dir/deflate.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/zlib/CMakeFiles/z.dir/deflate.c.o -MF CMakeFiles/z.dir/deflate.c.o.d -o CMakeFiles/z.dir/deflate.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/deflate.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zconf.h:424,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zlib.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zutil.h:22,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/deflate.h:16,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/deflate.c:52:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 22%] Building C object libs/ext/zlib/CMakeFiles/z.dir/gzclose.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/zlib/CMakeFiles/z.dir/gzclose.c.o -MF CMakeFiles/z.dir/gzclose.c.o.d -o CMakeFiles/z.dir/gzclose.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/gzclose.c
In file included from /usr/include/stdio.h:27:0,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/gzguts.h:21,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/gzclose.c:6:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 22%] Building C object libs/ext/zlib/CMakeFiles/z.dir/gzlib.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/zlib/CMakeFiles/z.dir/gzlib.c.o -MF CMakeFiles/z.dir/gzlib.c.o.d -o CMakeFiles/z.dir/gzlib.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/gzlib.c
In file included from /usr/include/stdio.h:27:0,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/gzguts.h:21,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/gzlib.c:6:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 22%] Building C object libs/ext/zlib/CMakeFiles/z.dir/gzread.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/zlib/CMakeFiles/z.dir/gzread.c.o -MF CMakeFiles/z.dir/gzread.c.o.d -o CMakeFiles/z.dir/gzread.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/gzread.c
In file included from /usr/include/stdio.h:27:0,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/gzguts.h:21,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/gzread.c:6:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 22%] Building C object libs/ext/zlib/CMakeFiles/z.dir/gzwrite.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/zlib/CMakeFiles/z.dir/gzwrite.c.o -MF CMakeFiles/z.dir/gzwrite.c.o.d -o CMakeFiles/z.dir/gzwrite.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/gzwrite.c
In file included from /usr/include/stdio.h:27:0,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/gzguts.h:21,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/gzwrite.c:6:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 22%] Building C object libs/ext/zlib/CMakeFiles/z.dir/infback.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/zlib/CMakeFiles/z.dir/infback.c.o -MF CMakeFiles/z.dir/infback.c.o.d -o CMakeFiles/z.dir/infback.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/infback.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zconf.h:424,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zlib.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zutil.h:22,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/infback.c:13:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/inffast.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/zlib/CMakeFiles/z.dir/inffast.c.o -MF CMakeFiles/z.dir/inffast.c.o.d -o CMakeFiles/z.dir/inffast.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/inffast.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zconf.h:424,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zlib.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zutil.h:22,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/inffast.c:6:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/inflate.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/zlib/CMakeFiles/z.dir/inflate.c.o -MF CMakeFiles/z.dir/inflate.c.o.d -o CMakeFiles/z.dir/inflate.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/inflate.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zconf.h:424,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zlib.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zutil.h:22,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/inflate.c:83:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/inftrees.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/zlib/CMakeFiles/z.dir/inftrees.c.o -MF CMakeFiles/z.dir/inftrees.c.o.d -o CMakeFiles/z.dir/inftrees.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/inftrees.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zconf.h:424,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zlib.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zutil.h:22,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/inftrees.c:6:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/trees.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/zlib/CMakeFiles/z.dir/trees.c.o -MF CMakeFiles/z.dir/trees.c.o.d -o CMakeFiles/z.dir/trees.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/trees.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zconf.h:424,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zlib.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zutil.h:22,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/deflate.h:16,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/trees.c:37:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/uncompr.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/zlib/CMakeFiles/z.dir/uncompr.c.o -MF CMakeFiles/z.dir/uncompr.c.o.d -o CMakeFiles/z.dir/uncompr.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/uncompr.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zconf.h:424,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zlib.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/uncompr.c:9:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/zutil.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/zlib/CMakeFiles/z.dir/zutil.c.o -MF CMakeFiles/z.dir/zutil.c.o.d -o CMakeFiles/z.dir/zutil.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zutil.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zconf.h:424,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zlib.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zutil.h:22,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zutil.c:8:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 23%] Linking C static library ../../../ilib/libz.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /usr/pkg/bin/cmake -P CMakeFiles/z.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/z.dir/link.txt --verbose=1
/bin/ar qc ../../../ilib/libz.a CMakeFiles/z.dir/adler32.c.o CMakeFiles/z.dir/compress.c.o CMakeFiles/z.dir/crc32.c.o CMakeFiles/z.dir/deflate.c.o CMakeFiles/z.dir/gzclose.c.o CMakeFiles/z.dir/gzlib.c.o CMakeFiles/z.dir/gzread.c.o CMakeFiles/z.dir/gzwrite.c.o CMakeFiles/z.dir/infback.c.o CMakeFiles/z.dir/inffast.c.o CMakeFiles/z.dir/inflate.c.o CMakeFiles/z.dir/inftrees.c.o CMakeFiles/z.dir/trees.c.o CMakeFiles/z.dir/uncompr.c.o CMakeFiles/z.dir/zutil.c.o
/bin/ranlib ../../../ilib/libz.a
[ 23%] Built target z
/usr/pkg/bin/bmake -f libs/ext/zstd/CMakeFiles/zstd.dir/build.make libs/ext/zstd/CMakeFiles/zstd.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zstd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zstd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zstd/CMakeFiles/zstd.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/ext/zstd/CMakeFiles/zstd.dir/build.make libs/ext/zstd/CMakeFiles/zstd.dir/build
[ 23%] Building C object libs/ext/zstd/CMakeFiles/zstd.dir/zstd.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zstd && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ext/zstd\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/ext/zstd/CMakeFiles/zstd.dir/zstd.c.o -MF CMakeFiles/zstd.dir/zstd.c.o.d -o CMakeFiles/zstd.dir/zstd.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zstd/zstd.c
In file included from /usr/include/limits.h:26:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zstd/zstd.c:77:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 24%] Linking C static library ../../../ilib/libzstd.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zstd && /usr/pkg/bin/cmake -P CMakeFiles/zstd.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zstd && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/zstd.dir/link.txt --verbose=1
/bin/ar qc ../../../ilib/libzstd.a CMakeFiles/zstd.dir/zstd.c.o
/bin/ranlib ../../../ilib/libzstd.a
[ 24%] Built target zstd
/usr/pkg/bin/bmake -f libs/kapp/CMakeFiles/kapp.dir/build.make libs/kapp/CMakeFiles/kapp.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp/CMakeFiles/kapp.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/kapp/CMakeFiles/kapp.dir/build.make libs/kapp/CMakeFiles/kapp.dir/build
[ 24%] Building C object libs/kapp/CMakeFiles/kapp.dir/main.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kapp/CMakeFiles/kapp.dir/main.c.o -MF CMakeFiles/kapp.dir/main.c.o.d -o CMakeFiles/kapp.dir/main.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/main.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/main-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/main.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 24%] Building C object libs/kapp/CMakeFiles/kapp.dir/args.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kapp/CMakeFiles/kapp.dir/args.c.o -MF CMakeFiles/kapp.dir/args.c.o.d -o CMakeFiles/kapp.dir/args.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/args.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/container.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/args.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 24%] Building C object libs/kapp/CMakeFiles/kapp.dir/args-conv.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kapp/CMakeFiles/kapp.dir/args-conv.c.o -MF CMakeFiles/kapp.dir/args-conv.c.o.d -o CMakeFiles/kapp.dir/args-conv.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/args-conv.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/args-conv.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 25%] Building C object libs/kapp/CMakeFiles/kapp.dir/tokenizer.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kapp/CMakeFiles/kapp.dir/tokenizer.c.o -MF CMakeFiles/kapp.dir/tokenizer.c.o.d -o CMakeFiles/kapp.dir/tokenizer.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/tokenizer.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kapp/args.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/tokenizer.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 25%] Building C object libs/kapp/CMakeFiles/kapp.dir/log-xml.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kapp/CMakeFiles/kapp.dir/log-xml.c.o -MF CMakeFiles/kapp.dir/log-xml.c.o.d -o CMakeFiles/kapp.dir/log-xml.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/log-xml.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kapp/main.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/log-xml.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 25%] Building C object libs/kapp/CMakeFiles/kapp.dir/unix/args-conv-os.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kapp/CMakeFiles/kapp.dir/unix/args-conv-os.c.o -MF CMakeFiles/kapp.dir/unix/args-conv-os.c.o.d -o CMakeFiles/kapp.dir/unix/args-conv-os.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/unix/args-conv-os.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kapp/args-conv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/unix/args-conv-os.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 25%] Building C object libs/kapp/CMakeFiles/kapp.dir/unix/sysmain.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kapp/CMakeFiles/kapp.dir/unix/sysmain.c.o -MF CMakeFiles/kapp.dir/unix/sysmain.c.o.d -o CMakeFiles/kapp.dir/unix/sysmain.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/unix/sysmain.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/unix/../main-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/unix/sysmain.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 25%] Building C object libs/kapp/CMakeFiles/kapp.dir/linux/ram.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kapp/CMakeFiles/kapp.dir/linux/ram.c.o -MF CMakeFiles/kapp.dir/linux/ram.c.o.d -o CMakeFiles/kapp.dir/linux/ram.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/linux/ram.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/linux/../main-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/linux/ram.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 25%] Linking C static library ../../lib/libkapp.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /usr/pkg/bin/cmake -P CMakeFiles/kapp.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/kapp.dir/link.txt --verbose=1
/bin/ar qc ../../lib/libkapp.a CMakeFiles/kapp.dir/main.c.o CMakeFiles/kapp.dir/args.c.o "CMakeFiles/kapp.dir/args-conv.c.o" CMakeFiles/kapp.dir/tokenizer.c.o "CMakeFiles/kapp.dir/log-xml.c.o" "CMakeFiles/kapp.dir/unix/args-conv-os.c.o" CMakeFiles/kapp.dir/unix/sysmain.c.o CMakeFiles/kapp.dir/linux/ram.c.o
/bin/ranlib ../../lib/libkapp.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && rm -f libkapp.a.3.0.6
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && mv libkapp.a libkapp.a.3.0.6
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libkapp.a.3.0.6 libkapp.a.3
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libkapp.a.3 libkapp.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libkapp.a libkapp-static.a
[ 25%] Built target kapp
/usr/pkg/bin/bmake -f libs/kapp/CMakeFiles/kapp-norsrc.dir/build.make libs/kapp/CMakeFiles/kapp-norsrc.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp/CMakeFiles/kapp-norsrc.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/kapp/CMakeFiles/kapp-norsrc.dir/build.make libs/kapp/CMakeFiles/kapp-norsrc.dir/build
[ 25%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/main.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNO_KRSRC=1 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/main.c.o -MF CMakeFiles/kapp-norsrc.dir/main.c.o.d -o CMakeFiles/kapp-norsrc.dir/main.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/main.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/main-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/main.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 25%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/args.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNO_KRSRC=1 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/args.c.o -MF CMakeFiles/kapp-norsrc.dir/args.c.o.d -o CMakeFiles/kapp-norsrc.dir/args.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/args.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/container.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/args.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 25%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/args-conv.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNO_KRSRC=1 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/args-conv.c.o -MF CMakeFiles/kapp-norsrc.dir/args-conv.c.o.d -o CMakeFiles/kapp-norsrc.dir/args-conv.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/args-conv.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/args-conv.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 26%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/tokenizer.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNO_KRSRC=1 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/tokenizer.c.o -MF CMakeFiles/kapp-norsrc.dir/tokenizer.c.o.d -o CMakeFiles/kapp-norsrc.dir/tokenizer.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/tokenizer.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kapp/args.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/tokenizer.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 26%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/log-xml.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNO_KRSRC=1 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/log-xml.c.o -MF CMakeFiles/kapp-norsrc.dir/log-xml.c.o.d -o CMakeFiles/kapp-norsrc.dir/log-xml.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/log-xml.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kapp/main.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/log-xml.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 26%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/unix/args-conv-os.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNO_KRSRC=1 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/unix/args-conv-os.c.o -MF CMakeFiles/kapp-norsrc.dir/unix/args-conv-os.c.o.d -o CMakeFiles/kapp-norsrc.dir/unix/args-conv-os.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/unix/args-conv-os.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kapp/args-conv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/unix/args-conv-os.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 26%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/unix/sysmain.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNO_KRSRC=1 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/unix/sysmain.c.o -MF CMakeFiles/kapp-norsrc.dir/unix/sysmain.c.o.d -o CMakeFiles/kapp-norsrc.dir/unix/sysmain.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/unix/sysmain.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/unix/../main-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/unix/sysmain.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 26%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/linux/ram.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNO_KRSRC=1 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/linux/ram.c.o -MF CMakeFiles/kapp-norsrc.dir/linux/ram.c.o.d -o CMakeFiles/kapp-norsrc.dir/linux/ram.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/linux/ram.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/linux/../main-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/linux/ram.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 26%] Linking C static library ../../ilib/libkapp-norsrc.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /usr/pkg/bin/cmake -P CMakeFiles/kapp-norsrc.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/kapp-norsrc.dir/link.txt --verbose=1
/bin/ar qc ../../ilib/libkapp-norsrc.a "CMakeFiles/kapp-norsrc.dir/main.c.o" "CMakeFiles/kapp-norsrc.dir/args.c.o" "CMakeFiles/kapp-norsrc.dir/args-conv.c.o" "CMakeFiles/kapp-norsrc.dir/tokenizer.c.o" "CMakeFiles/kapp-norsrc.dir/log-xml.c.o" "CMakeFiles/kapp-norsrc.dir/unix/args-conv-os.c.o" "CMakeFiles/kapp-norsrc.dir/unix/sysmain.c.o" "CMakeFiles/kapp-norsrc.dir/linux/ram.c.o"
/bin/ranlib ../../ilib/libkapp-norsrc.a
[ 26%] Built target kapp-norsrc
/usr/pkg/bin/bmake -f libs/kdb/CMakeFiles/kdb.dir/build.make libs/kdb/CMakeFiles/kdb.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb/CMakeFiles/kdb.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/kdb/CMakeFiles/kdb.dir/build.make libs/kdb/CMakeFiles/kdb.dir/build
[ 26%] Building C object libs/kdb/CMakeFiles/kdb.dir/btree.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/btree.c.o -MF CMakeFiles/kdb.dir/btree.c.o.d -o CMakeFiles/kdb.dir/btree.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/btree.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/btree.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/btree.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 26%] Building C object libs/kdb/CMakeFiles/kdb.dir/rowset.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/rowset.c.o -MF CMakeFiles/kdb.dir/rowset.c.o.d -o CMakeFiles/kdb.dir/rowset.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/rowset.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/refcount.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/rowset.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/rowset.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 27%] Building C object libs/kdb/CMakeFiles/kdb.dir/rowset-simple.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/rowset-simple.c.o -MF CMakeFiles/kdb.dir/rowset-simple.c.o.d -o CMakeFiles/kdb.dir/rowset-simple.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/rowset-simple.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/refcount.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/rowset.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/rowset-simple.c:31:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 27%] Building C object libs/kdb/CMakeFiles/kdb.dir/dbmgr-cmn.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/dbmgr-cmn.c.o -MF CMakeFiles/kdb.dir/dbmgr-cmn.c.o.d -o CMakeFiles/kdb.dir/dbmgr-cmn.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/dbmgr-cmn.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/defs.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/manager.h:37,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/dbmgr-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/dbmgr-cmn.c:33:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 27%] Building C object libs/kdb/CMakeFiles/kdb.dir/kdb.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/kdb.c.o -MF CMakeFiles/kdb.dir/kdb.c.o.d -o CMakeFiles/kdb.dir/kdb.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdb.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/defs.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/manager.h:37,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdb-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdb.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 27%] Building C object libs/kdb/CMakeFiles/kdb.dir/dbmgr.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/dbmgr.c.o -MF CMakeFiles/kdb.dir/dbmgr.c.o.d -o CMakeFiles/kdb.dir/dbmgr.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/dbmgr.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/kdb-priv.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/dbmgr.c:31:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 27%] Building C object libs/kdb/CMakeFiles/kdb.dir/dbcc-cmn.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/dbcc-cmn.c.o -MF CMakeFiles/kdb.dir/dbcc-cmn.c.o.d -o CMakeFiles/kdb.dir/dbcc-cmn.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/dbcc-cmn.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/dbcc-cmn.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 27%] Building C object libs/kdb/CMakeFiles/kdb.dir/database.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/database.c.o -MF CMakeFiles/kdb.dir/database.c.o.d -o CMakeFiles/kdb.dir/database.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/database.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/database.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/database-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/database.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 27%] Building C object libs/kdb/CMakeFiles/kdb.dir/database-cc.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/database-cc.c.o -MF CMakeFiles/kdb.dir/database-cc.c.o.d -o CMakeFiles/kdb.dir/database-cc.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/database-cc.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdbfmt-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-cmn.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/database-cc.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 27%] Building C object libs/kdb/CMakeFiles/kdb.dir/table.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/table.c.o -MF CMakeFiles/kdb.dir/table.c.o.d -o CMakeFiles/kdb.dir/table.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/table.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/table.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/table-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/table.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 27%] Building C object libs/kdb/CMakeFiles/kdb.dir/table-cc.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/table-cc.c.o -MF CMakeFiles/kdb.dir/table-cc.c.o.d -o CMakeFiles/kdb.dir/table-cc.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/table-cc.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdbfmt-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-cmn.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/table-cc.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 28%] Building C object libs/kdb/CMakeFiles/kdb.dir/column.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/column.c.o -MF CMakeFiles/kdb.dir/column.c.o.d -o CMakeFiles/kdb.dir/column.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/column.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/column.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/column-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/column.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 28%] Building C object libs/kdb/CMakeFiles/kdb.dir/column-cc.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/column-cc.c.o -MF CMakeFiles/kdb.dir/column-cc.c.o.d -o CMakeFiles/kdb.dir/column-cc.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/column-cc.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/column.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/column-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/column-cc.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 28%] Building C object libs/kdb/CMakeFiles/kdb.dir/coldata.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/coldata.c.o -MF CMakeFiles/kdb.dir/coldata.c.o.d -o CMakeFiles/kdb.dir/coldata.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/coldata.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/coldata-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/coldata.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 28%] Building C object libs/kdb/CMakeFiles/kdb.dir/colidx.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/colidx.c.o -MF CMakeFiles/kdb.dir/colidx.c.o.d -o CMakeFiles/kdb.dir/colidx.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/colidx.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/colidx-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/colidx.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 28%] Building C object libs/kdb/CMakeFiles/kdb.dir/colidx0.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/colidx0.c.o -MF CMakeFiles/kdb.dir/colidx0.c.o.d -o CMakeFiles/kdb.dir/colidx0.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/colidx0.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/colidx0-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/colidx0.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 28%] Building C object libs/kdb/CMakeFiles/kdb.dir/colidx1.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/colidx1.c.o -MF CMakeFiles/kdb.dir/colidx1.c.o.d -o CMakeFiles/kdb.dir/colidx1.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/colidx1.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/colidx1-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/colidx1.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 28%] Building C object libs/kdb/CMakeFiles/kdb.dir/colidx2.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/colidx2.c.o -MF CMakeFiles/kdb.dir/colidx2.c.o.d -o CMakeFiles/kdb.dir/colidx2.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/colidx2.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/colidx2-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/colidx2.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 28%] Building C object libs/kdb/CMakeFiles/kdb.dir/idxblk.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/idxblk.c.o -MF CMakeFiles/kdb.dir/idxblk.c.o.d -o CMakeFiles/kdb.dir/idxblk.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/idxblk.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdbfmt-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/colfmt-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/idxblk-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/idxblk.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 28%] Building C object libs/kdb/CMakeFiles/kdb.dir/meta.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/meta.c.o -MF CMakeFiles/kdb.dir/meta.c.o.d -o CMakeFiles/kdb.dir/meta.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/meta.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/defs.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/manager.h:37,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdb-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/meta.c:35:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 29%] Building C object libs/kdb/CMakeFiles/kdb.dir/index.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/index.c.o -MF CMakeFiles/kdb.dir/index.c.o.d -o CMakeFiles/kdb.dir/index.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdbfmt-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-cmn.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 29%] Building C object libs/kdb/CMakeFiles/kdb.dir/idstats.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/idstats.c.o -MF CMakeFiles/kdb.dir/idstats.c.o.d -o CMakeFiles/kdb.dir/idstats.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/idstats.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/container.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/idstats-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/idstats.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 29%] Building C object libs/kdb/CMakeFiles/kdb.dir/trieidx-v1.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/trieidx-v1.c.o -MF CMakeFiles/kdb.dir/trieidx-v1.c.o.d -o CMakeFiles/kdb.dir/trieidx-v1.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/trieidx-v1.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdbfmt-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-cmn.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/trieidx-v1.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 29%] Building C object libs/kdb/CMakeFiles/kdb.dir/trieval-v1.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/trieval-v1.c.o -MF CMakeFiles/kdb.dir/trieval-v1.c.o.d -o CMakeFiles/kdb.dir/trieval-v1.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/trieval-v1.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdbfmt-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-cmn.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/trieval-v1.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 29%] Building C object libs/kdb/CMakeFiles/kdb.dir/ptrieval-v1.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/ptrieval-v1.c.o -MF CMakeFiles/kdb.dir/ptrieval-v1.c.o.d -o CMakeFiles/kdb.dir/ptrieval-v1.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/ptrieval-v1.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdbfmt-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-cmn.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/ptrieval-v1.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 29%] Building C object libs/kdb/CMakeFiles/kdb.dir/trieidx-v2.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/trieidx-v2.c.o -MF CMakeFiles/kdb.dir/trieidx-v2.c.o.d -o CMakeFiles/kdb.dir/trieidx-v2.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/trieidx-v2.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdbfmt-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-cmn.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/trieidx-v2.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 29%] Building C object libs/kdb/CMakeFiles/kdb.dir/trieval-v2.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/trieval-v2.c.o -MF CMakeFiles/kdb.dir/trieval-v2.c.o.d -o CMakeFiles/kdb.dir/trieval-v2.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/trieval-v2.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdbfmt-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-cmn.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/trieval-v2.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 29%] Building C object libs/kdb/CMakeFiles/kdb.dir/ptrieval-v2.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/ptrieval-v2.c.o -MF CMakeFiles/kdb.dir/ptrieval-v2.c.o.d -o CMakeFiles/kdb.dir/ptrieval-v2.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/ptrieval-v2.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdbfmt-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-cmn.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/ptrieval-v2.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 29%] Building C object libs/kdb/CMakeFiles/kdb.dir/u64idx-v3.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/kdb.dir/u64idx-v3.c.o -MF CMakeFiles/kdb.dir/u64idx-v3.c.o.d -o CMakeFiles/kdb.dir/u64idx-v3.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/u64idx-v3.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdbfmt-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-cmn.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/u64idx-v3.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 30%] Linking C static library ../../ilib/libkdb.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /usr/pkg/bin/cmake -P CMakeFiles/kdb.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/kdb.dir/link.txt --verbose=1
/bin/ar qc ../../ilib/libkdb.a CMakeFiles/kdb.dir/btree.c.o CMakeFiles/kdb.dir/rowset.c.o "CMakeFiles/kdb.dir/rowset-simple.c.o" "CMakeFiles/kdb.dir/dbmgr-cmn.c.o" CMakeFiles/kdb.dir/kdb.c.o CMakeFiles/kdb.dir/dbmgr.c.o "CMakeFiles/kdb.dir/dbcc-cmn.c.o" CMakeFiles/kdb.dir/database.c.o "CMakeFiles/kdb.dir/database-cc.c.o" CMakeFiles/kdb.dir/table.c.o "CMakeFiles/kdb.dir/table-cc.c.o" CMakeFiles/kdb.dir/column.c.o "CMakeFiles/kdb.dir/column-cc.c.o" CMakeFiles/kdb.dir/coldata.c.o CMakeFiles/kdb.dir/colidx.c.o CMakeFiles/kdb.dir/colidx0.c.o CMakeFiles/kdb.dir/colidx1.c.o CMakeFiles/kdb.dir/colidx2.c.o CMakeFiles/kdb.dir/idxblk.c.o CMakeFiles/kdb.dir/meta.c.o CMakeFiles/kdb.dir/index.c.o CMakeFiles/kdb.dir/idstats.c.o "CMakeFiles/kdb.dir/trieidx-v1.c.o" "CMakeFiles/kdb.dir/trieval-v1.c.o" "CMakeFiles/kdb.dir/ptrieval-v1.c.o" "CMakeFiles/kdb.dir/trieidx-v2.c.o" "CMakeFiles/kdb.dir/trieval-v2.c.o" "CMakeFiles/kdb.dir/ptrieval-v2.c.o" "CMakeFiles/kdb.dir/u64idx-v3.c.o"
/bin/ranlib ../../ilib/libkdb.a
[ 30%] Built target kdb
/usr/pkg/bin/bmake -f libs/kdb/CMakeFiles/wkdb.dir/build.make libs/kdb/CMakeFiles/wkdb.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb/CMakeFiles/wkdb.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/kdb/CMakeFiles/wkdb.dir/build.make libs/kdb/CMakeFiles/wkdb.dir/build
[ 30%] Building C object libs/kdb/CMakeFiles/wkdb.dir/btree.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/btree.c.o -MF CMakeFiles/wkdb.dir/btree.c.o.d -o CMakeFiles/wkdb.dir/btree.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/btree.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/btree.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/btree.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 30%] Building C object libs/kdb/CMakeFiles/wkdb.dir/rowset.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/rowset.c.o -MF CMakeFiles/wkdb.dir/rowset.c.o.d -o CMakeFiles/wkdb.dir/rowset.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/rowset.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/refcount.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/rowset.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/rowset.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 30%] Building C object libs/kdb/CMakeFiles/wkdb.dir/rowset-simple.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/rowset-simple.c.o -MF CMakeFiles/wkdb.dir/rowset-simple.c.o.d -o CMakeFiles/wkdb.dir/rowset-simple.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/rowset-simple.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/refcount.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/rowset.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/rowset-simple.c:31:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 30%] Building C object libs/kdb/CMakeFiles/wkdb.dir/dbmgr-cmn.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/dbmgr-cmn.c.o -MF CMakeFiles/wkdb.dir/dbmgr-cmn.c.o.d -o CMakeFiles/wkdb.dir/dbmgr-cmn.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/dbmgr-cmn.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/defs.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/manager.h:37,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/dbmgr-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/dbmgr-cmn.c:33:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 30%] Building C object libs/kdb/CMakeFiles/wkdb.dir/wkdb.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wkdb.c.o -MF CMakeFiles/wkdb.dir/wkdb.c.o.d -o CMakeFiles/wkdb.dir/wkdb.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wkdb.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/defs.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/manager.h:37,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wkdb-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wkdb.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 30%] Building C object libs/kdb/CMakeFiles/wkdb.dir/wdbmgr.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wdbmgr.c.o -MF CMakeFiles/wkdb.dir/wdbmgr.c.o.d -o CMakeFiles/wkdb.dir/wdbmgr.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wdbmgr.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/defs.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/manager.h:37,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/dbmgr-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wdbmgr.c:31:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 30%] Building C object libs/kdb/CMakeFiles/wkdb.dir/wdatabase.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wdatabase.c.o -MF CMakeFiles/wkdb.dir/wdatabase.c.o.d -o CMakeFiles/wkdb.dir/wdatabase.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wdatabase.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/meta.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wdatabase.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 30%] Building C object libs/kdb/CMakeFiles/wkdb.dir/wtable.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wtable.c.o -MF CMakeFiles/wkdb.dir/wtable.c.o.d -o CMakeFiles/wkdb.dir/wtable.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wtable.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/table.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wtable-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wtable.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 31%] Building C object libs/kdb/CMakeFiles/wkdb.dir/wcolumn.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wcolumn.c.o -MF CMakeFiles/wkdb.dir/wcolumn.c.o.d -o CMakeFiles/wkdb.dir/wcolumn.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wcolumn.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/column.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wcolumn-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wcolumn.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 31%] Building C object libs/kdb/CMakeFiles/wkdb.dir/wcoldata.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wcoldata.c.o -MF CMakeFiles/wkdb.dir/wcoldata.c.o.d -o CMakeFiles/wkdb.dir/wcoldata.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wcoldata.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wcoldata-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wcoldata.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 31%] Building C object libs/kdb/CMakeFiles/wkdb.dir/wcolidx.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wcolidx.c.o -MF CMakeFiles/wkdb.dir/wcolidx.c.o.d -o CMakeFiles/wkdb.dir/wcolidx.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wcolidx.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wcolidx-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wcolidx.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 31%] Building C object libs/kdb/CMakeFiles/wkdb.dir/wcolidx0.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wcolidx0.c.o -MF CMakeFiles/wkdb.dir/wcolidx0.c.o.d -o CMakeFiles/wkdb.dir/wcolidx0.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wcolidx0.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/column.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wcolumn-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wcolidx0.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 31%] Building C object libs/kdb/CMakeFiles/wkdb.dir/wcolidx1.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wcolidx1.c.o -MF CMakeFiles/wkdb.dir/wcolidx1.c.o.d -o CMakeFiles/wkdb.dir/wcolidx1.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wcolidx1.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/column.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wcolumn-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wcolidx1.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 31%] Building C object libs/kdb/CMakeFiles/wkdb.dir/wcolidx2.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wcolidx2.c.o -MF CMakeFiles/wkdb.dir/wcolidx2.c.o.d -o CMakeFiles/wkdb.dir/wcolidx2.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wcolidx2.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/column.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wcolumn-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wcolidx2.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 31%] Building C object libs/kdb/CMakeFiles/wkdb.dir/idxblk.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/idxblk.c.o -MF CMakeFiles/wkdb.dir/idxblk.c.o.d -o CMakeFiles/wkdb.dir/idxblk.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/idxblk.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdbfmt-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/colfmt-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/idxblk-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/idxblk.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 31%] Building C object libs/kdb/CMakeFiles/wkdb.dir/widxblk.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/widxblk.c.o -MF CMakeFiles/wkdb.dir/widxblk.c.o.d -o CMakeFiles/wkdb.dir/widxblk.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/widxblk.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/widxblk-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/widxblk.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 32%] Building C object libs/kdb/CMakeFiles/wkdb.dir/wmeta.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wmeta.c.o -MF CMakeFiles/wkdb.dir/wmeta.c.o.d -o CMakeFiles/wkdb.dir/wmeta.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wmeta.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/defs.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kdb/manager.h:37,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wkdb-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wmeta.c:33:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 32%] Building C object libs/kdb/CMakeFiles/wkdb.dir/windex.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/windex.c.o -MF CMakeFiles/wkdb.dir/windex.c.o.d -o CMakeFiles/wkdb.dir/windex.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/windex.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdbfmt-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-cmn.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/windex-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/windex.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 32%] Building C object libs/kdb/CMakeFiles/wkdb.dir/wtrieidx-v1.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wtrieidx-v1.c.o -MF CMakeFiles/wkdb.dir/wtrieidx-v1.c.o.d -o CMakeFiles/wkdb.dir/wtrieidx-v1.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wtrieidx-v1.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdbfmt-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-cmn.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/windex-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wtrieidx-v1.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 32%] Building C object libs/kdb/CMakeFiles/wkdb.dir/wtrieidx-v2.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wtrieidx-v2.c.o -MF CMakeFiles/wkdb.dir/wtrieidx-v2.c.o.d -o CMakeFiles/wkdb.dir/wtrieidx-v2.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wtrieidx-v2.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdbfmt-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-cmn.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/windex-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wtrieidx-v2.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 32%] Building C object libs/kdb/CMakeFiles/wkdb.dir/wu64idx-v3.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wu64idx-v3.c.o -MF CMakeFiles/wkdb.dir/wu64idx-v3.c.o.d -o CMakeFiles/wkdb.dir/wu64idx-v3.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wu64idx-v3.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/kdbfmt-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/index-cmn.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/windex-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb/wu64idx-v3.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 32%] Linking C static library ../../ilib/libwkdb.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /usr/pkg/bin/cmake -P CMakeFiles/wkdb.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/wkdb.dir/link.txt --verbose=1
/bin/ar qc ../../ilib/libwkdb.a CMakeFiles/wkdb.dir/btree.c.o CMakeFiles/wkdb.dir/rowset.c.o "CMakeFiles/wkdb.dir/rowset-simple.c.o" "CMakeFiles/wkdb.dir/dbmgr-cmn.c.o" CMakeFiles/wkdb.dir/wkdb.c.o CMakeFiles/wkdb.dir/wdbmgr.c.o CMakeFiles/wkdb.dir/wdatabase.c.o CMakeFiles/wkdb.dir/wtable.c.o CMakeFiles/wkdb.dir/wcolumn.c.o CMakeFiles/wkdb.dir/wcoldata.c.o CMakeFiles/wkdb.dir/wcolidx.c.o CMakeFiles/wkdb.dir/wcolidx0.c.o CMakeFiles/wkdb.dir/wcolidx1.c.o CMakeFiles/wkdb.dir/wcolidx2.c.o CMakeFiles/wkdb.dir/idxblk.c.o CMakeFiles/wkdb.dir/widxblk.c.o CMakeFiles/wkdb.dir/wmeta.c.o CMakeFiles/wkdb.dir/windex.c.o "CMakeFiles/wkdb.dir/wtrieidx-v1.c.o" "CMakeFiles/wkdb.dir/wtrieidx-v2.c.o" "CMakeFiles/wkdb.dir/wu64idx-v3.c.o"
/bin/ranlib ../../ilib/libwkdb.a
[ 32%] Built target wkdb
/usr/pkg/bin/bmake -f libs/kfc/CMakeFiles/kfc.dir/build.make libs/kfc/CMakeFiles/kfc.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfc /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfc/CMakeFiles/kfc.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/kfc/CMakeFiles/kfc.dir/build.make libs/kfc/CMakeFiles/kfc.dir/build
[ 32%] Building C object libs/kfc/CMakeFiles/kfc.dir/except.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfc && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfc\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfc/CMakeFiles/kfc.dir/except.c.o -MF CMakeFiles/kfc.dir/except.c.o.d -o CMakeFiles/kfc.dir/except.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/except.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/rsrc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/except.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 32%] Building C object libs/kfc/CMakeFiles/kfc.dir/refcount.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfc && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfc\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfc/CMakeFiles/kfc.dir/refcount.c.o -MF CMakeFiles/kfc.dir/refcount.c.o.d -o CMakeFiles/kfc.dir/refcount.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/refcount.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/ctx.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/refcount.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 32%] Building C object libs/kfc/CMakeFiles/kfc.dir/rsrc.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfc && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfc\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfc/CMakeFiles/kfc.dir/rsrc.c.o -MF CMakeFiles/kfc.dir/rsrc.c.o.d -o CMakeFiles/kfc.dir/rsrc.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/rsrc.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/rsrc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/rsrc.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 32%] Building C object libs/kfc/CMakeFiles/kfc.dir/tstate.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfc && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfc\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfc/CMakeFiles/kfc.dir/tstate.c.o -MF CMakeFiles/kfc.dir/tstate.c.o.d -o CMakeFiles/kfc.dir/tstate.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/tstate.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/except.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/tstate.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/tstate.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 32%] Building C object libs/kfc/CMakeFiles/kfc.dir/vtbl.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfc && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfc\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfc/CMakeFiles/kfc.dir/vtbl.c.o -MF CMakeFiles/kfc.dir/vtbl.c.o.d -o CMakeFiles/kfc.dir/vtbl.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/vtbl.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/vtbl-impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/vtbl.c:33:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 32%] Building C object libs/kfc/CMakeFiles/kfc.dir/xc.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfc && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfc\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfc/CMakeFiles/kfc.dir/xc.c.o -MF CMakeFiles/kfc.dir/xc.c.o.d -o CMakeFiles/kfc.dir/xc.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/xc.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/xcdefs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/xcext.h:38,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/xc.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 32%] Building C object libs/kfc/CMakeFiles/kfc.dir/unix/sysctx.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfc && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfc\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfc/CMakeFiles/kfc.dir/unix/sysctx.c.o -MF CMakeFiles/kfc.dir/unix/sysctx.c.o.d -o CMakeFiles/kfc.dir/unix/sysctx.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/unix/sysctx.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/ctx.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/unix/sysctx.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 33%] Building C object libs/kfc/CMakeFiles/kfc.dir/unix/sysrsrc.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfc && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfc\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfc/CMakeFiles/kfc.dir/unix/sysrsrc.c.o -MF CMakeFiles/kfc.dir/unix/sysrsrc.c.o.d -o CMakeFiles/kfc.dir/unix/sysrsrc.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/unix/sysrsrc.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/rsrc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/unix/sysrsrc.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 33%] Linking C static library ../../ilib/libkfc.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfc && /usr/pkg/bin/cmake -P CMakeFiles/kfc.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfc && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/kfc.dir/link.txt --verbose=1
/bin/ar qc ../../ilib/libkfc.a CMakeFiles/kfc.dir/except.c.o CMakeFiles/kfc.dir/refcount.c.o CMakeFiles/kfc.dir/rsrc.c.o CMakeFiles/kfc.dir/tstate.c.o CMakeFiles/kfc.dir/vtbl.c.o CMakeFiles/kfc.dir/xc.c.o CMakeFiles/kfc.dir/unix/sysctx.c.o CMakeFiles/kfc.dir/unix/sysrsrc.c.o
/bin/ranlib ../../ilib/libkfc.a
[ 33%] Built target kfc
/usr/pkg/bin/bmake -f libs/kfg/CMakeFiles/kfg.dir/build.make libs/kfg/CMakeFiles/kfg.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg/CMakeFiles/kfg.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/kfg/CMakeFiles/kfg.dir/build.make libs/kfg/CMakeFiles/kfg.dir/build
[ 33%] Building C object libs/kfg/CMakeFiles/kfg.dir/zz_config-grammar.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfg/CMakeFiles/kfg.dir/zz_config-grammar.c.o -MF CMakeFiles/kfg.dir/zz_config-grammar.c.o.d -o CMakeFiles/kfg.dir/zz_config-grammar.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/zz_config-grammar.c
In file included from /usr/include/string.h:25:0,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/kfg-lex.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/kfg-parse.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/zz_config-grammar.c:75:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 33%] Building C object libs/kfg/CMakeFiles/kfg.dir/zz_config-lex.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfg/CMakeFiles/kfg.dir/zz_config-lex.c.o -MF CMakeFiles/kfg.dir/zz_config-lex.c.o.d -o CMakeFiles/kfg.dir/zz_config-lex.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/zz_config-lex.c
In file included from /usr/include/stdio.h:27:0,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/zz_config-lex.c:257:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 33%] Building C object libs/kfg/CMakeFiles/kfg.dir/config-aws.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfg/CMakeFiles/kfg.dir/config-aws.c.o -MF CMakeFiles/kfg.dir/config-aws.c.o.d -o CMakeFiles/kfg.dir/config-aws.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/config-aws.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/text.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/config-aws.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 33%] Building C object libs/kfg/CMakeFiles/kfg.dir/config.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfg/CMakeFiles/kfg.dir/config.c.o -MF CMakeFiles/kfg.dir/config.c.o.d -o CMakeFiles/kfg.dir/config.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/config.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfg/config.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfg/kfg-priv.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/config.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 33%] Building C object libs/kfg/CMakeFiles/kfg.dir/docker.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfg/CMakeFiles/kfg.dir/docker.c.o -MF CMakeFiles/kfg.dir/docker.c.o.d -o CMakeFiles/kfg.dir/docker.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/docker.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/docker.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 33%] Building C object libs/kfg/CMakeFiles/kfg.dir/kart.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfg/CMakeFiles/kfg.dir/kart.c.o -MF CMakeFiles/kfg.dir/kart.c.o.d -o CMakeFiles/kfg.dir/kart.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/kart.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfg/config.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/kart.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 33%] Building C object libs/kfg/CMakeFiles/kfg.dir/keystore.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfg/CMakeFiles/kfg.dir/keystore.c.o -MF CMakeFiles/kfg.dir/keystore.c.o.d -o CMakeFiles/kfg.dir/keystore.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/keystore.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfg/keystore.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfg/keystore-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/keystore.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 34%] Building C object libs/kfg/CMakeFiles/kfg.dir/ngc.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfg/CMakeFiles/kfg.dir/ngc.c.o -MF CMakeFiles/kfg.dir/ngc.c.o.d -o CMakeFiles/kfg.dir/ngc.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/ngc.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfg/ngc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/ngc.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 34%] Building C object libs/kfg/CMakeFiles/kfg.dir/properties.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfg/CMakeFiles/kfg.dir/properties.c.o -MF CMakeFiles/kfg.dir/properties.c.o.d -o CMakeFiles/kfg.dir/properties.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/properties.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/namelist.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/properties.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 34%] Building C object libs/kfg/CMakeFiles/kfg.dir/report-kfg.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfg/CMakeFiles/kfg.dir/report-kfg.c.o -MF CMakeFiles/kfg.dir/report-kfg.c.o.d -o CMakeFiles/kfg.dir/report-kfg.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/report-kfg.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfg/config.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/report-kfg.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 34%] Building C object libs/kfg/CMakeFiles/kfg.dir/repository.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfg/CMakeFiles/kfg.dir/repository.c.o -MF CMakeFiles/kfg.dir/repository.c.o.d -o CMakeFiles/kfg.dir/repository.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/repository.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/vector.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfg/repository.h:36,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/repository.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 34%] Linking C static library ../../ilib/libkfg.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /usr/pkg/bin/cmake -P CMakeFiles/kfg.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/kfg.dir/link.txt --verbose=1
/bin/ar qc ../../ilib/libkfg.a "CMakeFiles/kfg.dir/zz_config-grammar.c.o" "CMakeFiles/kfg.dir/zz_config-lex.c.o" "CMakeFiles/kfg.dir/config-aws.c.o" CMakeFiles/kfg.dir/config.c.o CMakeFiles/kfg.dir/docker.c.o CMakeFiles/kfg.dir/kart.c.o CMakeFiles/kfg.dir/keystore.c.o CMakeFiles/kfg.dir/ngc.c.o CMakeFiles/kfg.dir/properties.c.o "CMakeFiles/kfg.dir/report-kfg.c.o" CMakeFiles/kfg.dir/repository.c.o
/bin/ranlib ../../ilib/libkfg.a
[ 34%] Built target kfg
/usr/pkg/bin/bmake -f libs/kfs/CMakeFiles/kfs-nommap.dir/build.make libs/kfs/CMakeFiles/kfs-nommap.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs/CMakeFiles/kfs-nommap.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/kfs/CMakeFiles/kfs-nommap.dir/build.make libs/kfs/CMakeFiles/kfs-nommap.dir/build
[ 34%] Building C object libs/kfs/CMakeFiles/kfs-nommap.dir/directory.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Darrayfile -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs-nommap.dir/directory.c.o -MF CMakeFiles/kfs-nommap.dir/directory.c.o.d -o CMakeFiles/kfs-nommap.dir/directory.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/directory.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/directory.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 34%] Linking C static library ../../ilib/libkfs-nommap.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /usr/pkg/bin/cmake -P CMakeFiles/kfs-nommap.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/kfs-nommap.dir/link.txt --verbose=1
/bin/ar qc ../../ilib/libkfs-nommap.a "CMakeFiles/kfs-nommap.dir/directory.c.o"
/bin/ranlib ../../ilib/libkfs-nommap.a
[ 34%] Built target kfs-nommap
/usr/pkg/bin/bmake -f libs/kfs/CMakeFiles/kfs.dir/build.make libs/kfs/CMakeFiles/kfs.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs/CMakeFiles/kfs.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/kfs/CMakeFiles/kfs.dir/build.make libs/kfs/CMakeFiles/kfs.dir/build
[ 34%] Building C object libs/kfs/CMakeFiles/kfs.dir/directory.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/directory.c.o -MF CMakeFiles/kfs.dir/directory.c.o.d -o CMakeFiles/kfs.dir/directory.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/directory.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/directory.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 34%] Building C object libs/kfs/CMakeFiles/kfs.dir/arrayfile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/arrayfile.c.o -MF CMakeFiles/kfs.dir/arrayfile.c.o.d -o CMakeFiles/kfs.dir/arrayfile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/arrayfile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/arrayfile.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 34%] Building C object libs/kfs/CMakeFiles/kfs.dir/file.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/file.c.o -MF CMakeFiles/kfs.dir/file.c.o.d -o CMakeFiles/kfs.dir/file.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/file.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/file.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 34%] Building C object libs/kfs/CMakeFiles/kfs.dir/chunk-reader.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/chunk-reader.c.o -MF CMakeFiles/kfs.dir/chunk-reader.c.o.d -o CMakeFiles/kfs.dir/chunk-reader.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/chunk-reader.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/chunk-reader.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 35%] Building C object libs/kfs/CMakeFiles/kfs.dir/gzip.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/gzip.c.o -MF CMakeFiles/kfs.dir/gzip.c.o.d -o CMakeFiles/kfs.dir/gzip.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/gzip.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/gzip.c:31:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 35%] Building C object libs/kfs/CMakeFiles/kfs.dir/bzip.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/bzip.c.o -MF CMakeFiles/kfs.dir/bzip.c.o.d -o CMakeFiles/kfs.dir/bzip.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/bzip.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/bzip.c:31:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 35%] Building C object libs/kfs/CMakeFiles/kfs.dir/md5.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/md5.c.o -MF CMakeFiles/kfs.dir/md5.c.o.d -o CMakeFiles/kfs.dir/md5.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/md5.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/md5.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/md5.c:31:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 35%] Building C object libs/kfs/CMakeFiles/kfs.dir/crc32.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/crc32.c.o -MF CMakeFiles/kfs.dir/crc32.c.o.d -o CMakeFiles/kfs.dir/crc32.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/crc32.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/crc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/crc32.c:34:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 35%] Building C object libs/kfs/CMakeFiles/kfs.dir/arc.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/arc.c.o -MF CMakeFiles/kfs.dir/arc.c.o.d -o CMakeFiles/kfs.dir/arc.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/arc.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/container.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/toc-priv.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/arc.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 35%] Building C object libs/kfs/CMakeFiles/kfs.dir/toc.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/toc.c.o -MF CMakeFiles/kfs.dir/toc.c.o.d -o CMakeFiles/kfs.dir/toc.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/toc.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/container.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/toc.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 35%] Building C object libs/kfs/CMakeFiles/kfs.dir/tocentry.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/tocentry.c.o -MF CMakeFiles/kfs.dir/tocentry.c.o.d -o CMakeFiles/kfs.dir/tocentry.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/tocentry.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/container.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/tocentry.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 35%] Building C object libs/kfs/CMakeFiles/kfs.dir/tocdir.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/tocdir.c.o -MF CMakeFiles/kfs.dir/tocdir.c.o.d -o CMakeFiles/kfs.dir/tocdir.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/tocdir.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/container.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/toc-priv.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/tocdir.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 36%] Building C object libs/kfs/CMakeFiles/kfs.dir/tocfile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/tocfile.c.o -MF CMakeFiles/kfs.dir/tocfile.c.o.d -o CMakeFiles/kfs.dir/tocfile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/tocfile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/tocfile.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 36%] Building C object libs/kfs/CMakeFiles/kfs.dir/sra.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/sra.c.o -MF CMakeFiles/kfs.dir/sra.c.o.d -o CMakeFiles/kfs.dir/sra.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/sra.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/sra.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 36%] Building C object libs/kfs/CMakeFiles/kfs.dir/tar.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/tar.c.o -MF CMakeFiles/kfs.dir/tar.c.o.d -o CMakeFiles/kfs.dir/tar.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/tar.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/tar.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 36%] Building C object libs/kfs/CMakeFiles/kfs.dir/teefile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/teefile.c.o -MF CMakeFiles/kfs.dir/teefile.c.o.d -o CMakeFiles/kfs.dir/teefile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/teefile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/log.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/teefile.c:42:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 36%] Building C object libs/kfs/CMakeFiles/kfs.dir/buffile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/buffile.c.o -MF CMakeFiles/kfs.dir/buffile.c.o.d -o CMakeFiles/kfs.dir/buffile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/buffile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/buffile.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/buffile.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 36%] Building C object libs/kfs/CMakeFiles/kfs.dir/buffile-read.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/buffile-read.c.o -MF CMakeFiles/kfs.dir/buffile-read.c.o.d -o CMakeFiles/kfs.dir/buffile-read.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/buffile-read.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/buffile-read.c:31:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 36%] Building C object libs/kfs/CMakeFiles/kfs.dir/buffile-write.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/buffile-write.c.o -MF CMakeFiles/kfs.dir/buffile-write.c.o.d -o CMakeFiles/kfs.dir/buffile-write.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/buffile-write.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/buffile-write.c:31:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 36%] Building C object libs/kfs/CMakeFiles/kfs.dir/subfile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/subfile.c.o -MF CMakeFiles/kfs.dir/subfile.c.o.d -o CMakeFiles/kfs.dir/subfile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/subfile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/log.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/subfile.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 36%] Building C object libs/kfs/CMakeFiles/kfs.dir/nullfile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/nullfile.c.o -MF CMakeFiles/kfs.dir/nullfile.c.o.d -o CMakeFiles/kfs.dir/nullfile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/nullfile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/log.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/nullfile.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 37%] Building C object libs/kfs/CMakeFiles/kfs.dir/countfile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/countfile.c.o -MF CMakeFiles/kfs.dir/countfile.c.o.d -o CMakeFiles/kfs.dir/countfile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/countfile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/log.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/countfile.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 37%] Building C object libs/kfs/CMakeFiles/kfs.dir/dir_test.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/dir_test.c.o -MF CMakeFiles/kfs.dir/dir_test.c.o.d -o CMakeFiles/kfs.dir/dir_test.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/dir_test.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/directory.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/dir_test.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 37%] Building C object libs/kfs/CMakeFiles/kfs.dir/pagefile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/pagefile.c.o -MF CMakeFiles/kfs.dir/pagefile.c.o.d -o CMakeFiles/kfs.dir/pagefile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/pagefile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/pagefile.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/pagefile.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 37%] Building C object libs/kfs/CMakeFiles/kfs.dir/pmem.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/pmem.c.o -MF CMakeFiles/kfs.dir/pmem.c.o.d -o CMakeFiles/kfs.dir/pmem.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/pmem.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/pmem.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 37%] Building C object libs/kfs/CMakeFiles/kfs.dir/readheadfile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/readheadfile.c.o -MF CMakeFiles/kfs.dir/readheadfile.c.o.d -o CMakeFiles/kfs.dir/readheadfile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/readheadfile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/log.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/readheadfile.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 37%] Building C object libs/kfs/CMakeFiles/kfs.dir/ramfile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/ramfile.c.o -MF CMakeFiles/kfs.dir/ramfile.c.o.d -o CMakeFiles/kfs.dir/ramfile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/ramfile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/log.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/ramfile.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 37%] Building C object libs/kfs/CMakeFiles/kfs.dir/extendable-ramfile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/extendable-ramfile.c.o -MF CMakeFiles/kfs.dir/extendable-ramfile.c.o.d -o CMakeFiles/kfs.dir/extendable-ramfile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/extendable-ramfile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/extendable-ramfile.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/extendable-ramfile.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 37%] Building C object libs/kfs/CMakeFiles/kfs.dir/quickmount.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/quickmount.c.o -MF CMakeFiles/kfs.dir/quickmount.c.o.d -o CMakeFiles/kfs.dir/quickmount.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/quickmount.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/quickmount.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/quickmount.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 37%] Building C object libs/kfs/CMakeFiles/kfs.dir/report.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/report.c.o -MF CMakeFiles/kfs.dir/report.c.o.d -o CMakeFiles/kfs.dir/report.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/report.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/klib-priv.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/report.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 38%] Building C object libs/kfs/CMakeFiles/kfs.dir/lockfile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/lockfile.c.o -MF CMakeFiles/kfs.dir/lockfile.c.o.d -o CMakeFiles/kfs.dir/lockfile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/lockfile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/defs.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/lockfile.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/lockfile.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 38%] Building C object libs/kfs/CMakeFiles/kfs.dir/remove-file-task.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/remove-file-task.c.o -MF CMakeFiles/kfs.dir/remove-file-task.c.o.d -o CMakeFiles/kfs.dir/remove-file-task.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/remove-file-task.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kproc/task.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/remove-file-task.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 38%] Building C object libs/kfs/CMakeFiles/kfs.dir/cacheteefile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/cacheteefile.c.o -MF CMakeFiles/kfs.dir/cacheteefile.c.o.d -o CMakeFiles/kfs.dir/cacheteefile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/cacheteefile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/cacheteefile.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 38%] Building C object libs/kfs/CMakeFiles/kfs.dir/cacheteefile2.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/cacheteefile2.c.o -MF CMakeFiles/kfs.dir/cacheteefile2.c.o.d -o CMakeFiles/kfs.dir/cacheteefile2.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/cacheteefile2.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/cacheteefile2.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 38%] Building C object libs/kfs/CMakeFiles/kfs.dir/cacheteefile3.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/cacheteefile3.c.o -MF CMakeFiles/kfs.dir/cacheteefile3.c.o.d -o CMakeFiles/kfs.dir/cacheteefile3.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/cacheteefile3.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/cacheteefile3.c:34:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 38%] Building C object libs/kfs/CMakeFiles/kfs.dir/rrcachedfile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/rrcachedfile.c.o -MF CMakeFiles/kfs.dir/rrcachedfile.c.o.d -o CMakeFiles/kfs.dir/rrcachedfile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/rrcachedfile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/rrcachedfile.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 38%] Building C object libs/kfs/CMakeFiles/kfs.dir/recorder.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/recorder.c.o -MF CMakeFiles/kfs.dir/recorder.c.o.d -o CMakeFiles/kfs.dir/recorder.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/recorder.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/recorder.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 38%] Building C object libs/kfs/CMakeFiles/kfs.dir/logfile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/logfile.c.o -MF CMakeFiles/kfs.dir/logfile.c.o.d -o CMakeFiles/kfs.dir/logfile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/logfile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/logfile.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/callback_file.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/callback_file.c.o -MF CMakeFiles/kfs.dir/callback_file.c.o.d -o CMakeFiles/kfs.dir/callback_file.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/callback_file.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/callback_file.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/poolpages.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/poolpages.c.o -MF CMakeFiles/kfs.dir/poolpages.c.o.d -o CMakeFiles/kfs.dir/poolpages.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/poolpages.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/poolpages.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/poolpages.c:26:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/lru_cache.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/lru_cache.c.o -MF CMakeFiles/kfs.dir/lru_cache.c.o.d -o CMakeFiles/kfs.dir/lru_cache.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/lru_cache.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/lru_cache.h:26,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/lru_cache.c:26:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/from_to_namelist.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/from_to_namelist.c.o -MF CMakeFiles/kfs.dir/from_to_namelist.c.o.d -o CMakeFiles/kfs.dir/from_to_namelist.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/from_to_namelist.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/from_to_namelist.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/limitfile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/limitfile.c.o -MF CMakeFiles/kfs.dir/limitfile.c.o.d -o CMakeFiles/kfs.dir/limitfile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/limitfile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/log.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/limitfile.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/appendfile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/appendfile.c.o -MF CMakeFiles/kfs.dir/appendfile.c.o.d -o CMakeFiles/kfs.dir/appendfile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/appendfile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/log.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/appendfile.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/mmap.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/mmap.c.o -MF CMakeFiles/kfs.dir/mmap.c.o.d -o CMakeFiles/kfs.dir/mmap.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/mmap.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/mmap.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/mmap-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/mmap.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/sysdir.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/unix/sysdir.c.o -MF CMakeFiles/kfs.dir/unix/sysdir.c.o.d -o CMakeFiles/kfs.dir/unix/sysdir.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/sysdir.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/sysdir-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/sysdir.c:39:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/sysdll.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/unix/sysdll.c.o -MF CMakeFiles/kfs.dir/unix/sysdll.c.o.d -o CMakeFiles/kfs.dir/unix/sysdll.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/sysdll.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/sysdir-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/sysdll.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 40%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/sysfile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/unix/sysfile.c.o -MF CMakeFiles/kfs.dir/unix/sysfile.c.o.d -o CMakeFiles/kfs.dir/unix/sysfile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/sysfile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-v1.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/file-impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/impl.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/sysfile-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/sysfile.c:34:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 40%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/syslockfile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/unix/syslockfile.c.o -MF CMakeFiles/kfs.dir/unix/syslockfile.c.o.d -o CMakeFiles/kfs.dir/unix/syslockfile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/syslockfile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/defs.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/lockfile.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/syslockfile.c:31:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 40%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/sysmmap.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kfs/CMakeFiles/kfs.dir/unix/sysmmap.c.o -MF CMakeFiles/kfs.dir/unix/sysmmap.c.o.d -o CMakeFiles/kfs.dir/unix/sysmmap.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/sysmmap.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfs/mmap.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/../mmap-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/sysmmap-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/sysmmap.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 40%] Linking C static library ../../ilib/libkfs.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /usr/pkg/bin/cmake -P CMakeFiles/kfs.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/kfs.dir/link.txt --verbose=1
/bin/ar qc ../../ilib/libkfs.a CMakeFiles/kfs.dir/directory.c.o CMakeFiles/kfs.dir/arrayfile.c.o CMakeFiles/kfs.dir/file.c.o "CMakeFiles/kfs.dir/chunk-reader.c.o" CMakeFiles/kfs.dir/gzip.c.o CMakeFiles/kfs.dir/bzip.c.o CMakeFiles/kfs.dir/md5.c.o CMakeFiles/kfs.dir/crc32.c.o CMakeFiles/kfs.dir/arc.c.o CMakeFiles/kfs.dir/toc.c.o CMakeFiles/kfs.dir/tocentry.c.o CMakeFiles/kfs.dir/tocdir.c.o CMakeFiles/kfs.dir/tocfile.c.o CMakeFiles/kfs.dir/sra.c.o CMakeFiles/kfs.dir/tar.c.o CMakeFiles/kfs.dir/teefile.c.o CMakeFiles/kfs.dir/buffile.c.o "CMakeFiles/kfs.dir/buffile-read.c.o" "CMakeFiles/kfs.dir/buffile-write.c.o" CMakeFiles/kfs.dir/subfile.c.o CMakeFiles/kfs.dir/nullfile.c.o CMakeFiles/kfs.dir/countfile.c.o CMakeFiles/kfs.dir/dir_test.c.o CMakeFiles/kfs.dir/pagefile.c.o CMakeFiles/kfs.dir/pmem.c.o CMakeFiles/kfs.dir/readheadfile.c.o CMakeFiles/kfs.dir/ramfile.c.o "CMakeFiles/kfs.dir/extendable-ramfile.c.o" CMakeFiles/kfs.dir/quickmount.c.o CMakeFiles/kfs.dir/report.c.o CMakeFiles/kfs.dir/lockfile.c.o "CMakeFiles/kfs.dir/remove-file-task.c.o" CMakeFiles/kfs.dir/cacheteefile.c.o CMakeFiles/kfs.dir/cacheteefile2.c.o CMakeFiles/kfs.dir/cacheteefile3.c.o CMakeFiles/kfs.dir/rrcachedfile.c.o CMakeFiles/kfs.dir/recorder.c.o CMakeFiles/kfs.dir/logfile.c.o CMakeFiles/kfs.dir/callback_file.c.o CMakeFiles/kfs.dir/poolpages.c.o CMakeFiles/kfs.dir/lru_cache.c.o CMakeFiles/kfs.dir/from_to_namelist.c.o CMakeFiles/kfs.dir/limitfile.c.o CMakeFiles/kfs.dir/appendfile.c.o CMakeFiles/kfs.dir/mmap.c.o CMakeFiles/kfs.dir/unix/sysdir.c.o CMakeFiles/kfs.dir/unix/sysdll.c.o CMakeFiles/kfs.dir/unix/sysfile.c.o CMakeFiles/kfs.dir/unix/syslockfile.c.o CMakeFiles/kfs.dir/unix/sysmmap.c.o
/bin/ranlib ../../ilib/libkfs.a
[ 40%] Built target kfs
/usr/pkg/bin/bmake -f libs/klib/CMakeFiles/klib.dir/build.make libs/klib/CMakeFiles/klib.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/CMakeFiles/klib.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/klib/CMakeFiles/klib.dir/build.make libs/klib/CMakeFiles/klib.dir/build
[ 40%] Building C object libs/klib/CMakeFiles/klib.dir/all-vdb-version.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/all-vdb-version.c.o -MF CMakeFiles/klib.dir/all-vdb-version.c.o.d -o CMakeFiles/klib.dir/all-vdb-version.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/all-vdb-version.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/ncbi-vdb-version.h:37,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/all-vdb-version.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 40%] Building C object libs/klib/CMakeFiles/klib.dir/base64.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/base64.c.o -MF CMakeFiles/klib.dir/base64.c.o.d -o CMakeFiles/klib.dir/base64.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/base64.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/base64.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/base64.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 40%] Building C object libs/klib/CMakeFiles/klib.dir/bsearch.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/bsearch.c.o -MF CMakeFiles/klib.dir/bsearch.c.o.d -o CMakeFiles/klib.dir/bsearch.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/bsearch.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/sort.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/bsearch.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 41%] Building C object libs/klib/CMakeFiles/klib.dir/bstpersist.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/bstpersist.c.o -MF CMakeFiles/klib.dir/bstpersist.c.o.d -o CMakeFiles/klib.dir/bstpersist.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/bstpersist.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/container.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/trie.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/trie-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/bstpersist.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 41%] Building C object libs/klib/CMakeFiles/klib.dir/btree.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/btree.c.o -MF CMakeFiles/klib.dir/btree.c.o.d -o CMakeFiles/klib.dir/btree.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/btree.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/btree.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/btree.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 41%] Building C object libs/klib/CMakeFiles/klib.dir/container.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -Wstrict-aliasing=0 -MD -MT libs/klib/CMakeFiles/klib.dir/container.c.o -MF CMakeFiles/klib.dir/container.c.o.d -o CMakeFiles/klib.dir/container.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/container.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/container.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/container.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 41%] Building C object libs/klib/CMakeFiles/klib.dir/cp1252.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/cp1252.c.o -MF CMakeFiles/klib.dir/cp1252.c.o.d -o CMakeFiles/klib.dir/cp1252.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/cp1252.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/cp1252.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 41%] Building C object libs/klib/CMakeFiles/klib.dir/crc32.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/crc32.c.o -MF CMakeFiles/klib.dir/crc32.c.o.d -o CMakeFiles/klib.dir/crc32.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/crc32.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/checksum.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/crc32.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 41%] Building C object libs/klib/CMakeFiles/klib.dir/data-buffer.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/data-buffer.c.o -MF CMakeFiles/klib.dir/data-buffer.c.o.d -o CMakeFiles/klib.dir/data-buffer.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/data-buffer.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/data-buffer.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/data-buffer.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 41%] Building C object libs/klib/CMakeFiles/klib.dir/guid.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/guid.c.o -MF CMakeFiles/klib.dir/guid.c.o.d -o CMakeFiles/klib.dir/guid.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/guid.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/guid.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/guid.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 41%] Building C object libs/klib/CMakeFiles/klib.dir/hashfile.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/hashfile.c.o -MF CMakeFiles/klib.dir/hashfile.c.o.d -o CMakeFiles/klib.dir/hashfile.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/hashfile.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64/arch-impl.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/hashfile.c:26:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 42%] Building C object libs/klib/CMakeFiles/klib.dir/hashtable.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/hashtable.c.o -MF CMakeFiles/klib.dir/hashtable.c.o.d -o CMakeFiles/klib.dir/hashtable.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/hashtable.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64/arch-impl.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/hashtable.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 42%] Building C object libs/klib/CMakeFiles/klib.dir/iso8859-1.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/iso8859-1.c.o -MF CMakeFiles/klib.dir/iso8859-1.c.o.d -o CMakeFiles/klib.dir/iso8859-1.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/iso8859-1.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/iso8859-1.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 42%] Building C object libs/klib/CMakeFiles/klib.dir/iso8859.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/iso8859.c.o -MF CMakeFiles/klib.dir/iso8859.c.o.d -o CMakeFiles/klib.dir/iso8859.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/iso8859.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/text.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/iso8859.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 42%] Building C object libs/klib/CMakeFiles/klib.dir/zz_json-grammar.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/zz_json-grammar.c.o -MF CMakeFiles/klib.dir/zz_json-grammar.c.o.d -o CMakeFiles/klib.dir/zz_json-grammar.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/zz_json-grammar.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/json.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/json-priv.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/zz_json-grammar.c:81:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 42%] Building C object libs/klib/CMakeFiles/klib.dir/zz_json-lex.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/zz_json-lex.c.o -MF CMakeFiles/klib.dir/zz_json-lex.c.o.d -o CMakeFiles/klib.dir/zz_json-lex.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/zz_json-lex.c
In file included from /usr/include/stdio.h:27:0,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/zz_json-lex.c:269:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 42%] Building C object libs/klib/CMakeFiles/klib.dir/json.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/json.c.o -MF CMakeFiles/klib.dir/json.c.o.d -o CMakeFiles/klib.dir/json.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/json.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/json.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/json.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 42%] Building C object libs/klib/CMakeFiles/klib.dir/judy-vector.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -Wstrict-aliasing=0 -MD -MT libs/klib/CMakeFiles/klib.dir/judy-vector.c.o -MF CMakeFiles/klib.dir/judy-vector.c.o.d -o CMakeFiles/klib.dir/judy-vector.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy-vector.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/vector.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy-vector.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 42%] Building C object libs/klib/CMakeFiles/klib.dir/ksort.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/ksort.c.o -MF CMakeFiles/klib.dir/ksort.c.o.d -o CMakeFiles/klib.dir/ksort.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/ksort.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/sort.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/ksort.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 42%] Building C object libs/klib/CMakeFiles/klib.dir/log.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/log.c.o -MF CMakeFiles/klib.dir/log.c.o.d -o CMakeFiles/klib.dir/log.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/log.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/log.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/log-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/log.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 43%] Building C object libs/klib/CMakeFiles/klib.dir/md5.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/md5.c.o -MF CMakeFiles/klib.dir/md5.c.o.d -o CMakeFiles/klib.dir/md5.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/md5.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/checksum.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/md5.c:55:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 43%] Building C object libs/klib/CMakeFiles/klib.dir/namelist.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/namelist.c.o -MF CMakeFiles/klib.dir/namelist.c.o.d -o CMakeFiles/klib.dir/namelist.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/namelist.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/namelist.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 43%] Building C object libs/klib/CMakeFiles/klib.dir/num-gen.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/num-gen.c.o -MF CMakeFiles/klib.dir/num-gen.c.o.d -o CMakeFiles/klib.dir/num-gen.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/num-gen.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/num-gen.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 43%] Building C object libs/klib/CMakeFiles/klib.dir/out.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/out.c.o -MF CMakeFiles/klib.dir/out.c.o.d -o CMakeFiles/klib.dir/out.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/out.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/writer.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/out.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/out.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 43%] Building C object libs/klib/CMakeFiles/klib.dir/pack.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/pack.c.o -MF CMakeFiles/klib.dir/pack.c.o.d -o CMakeFiles/klib.dir/pack.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/pack.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/pack.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/pack.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 43%] Building C object libs/klib/CMakeFiles/klib.dir/pbstree-impl.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/pbstree-impl.c.o -MF CMakeFiles/klib.dir/pbstree-impl.c.o.d -o CMakeFiles/klib.dir/pbstree-impl.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/pbstree-impl.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/pbstree.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/pbstree-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/pbstree-impl.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 43%] Building C object libs/klib/CMakeFiles/klib.dir/pbstree-swapped.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/pbstree-swapped.c.o -MF CMakeFiles/klib.dir/pbstree-swapped.c.o.d -o CMakeFiles/klib.dir/pbstree-swapped.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/pbstree-swapped.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/pbstree.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/pbstree-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/pbstree-impl.c:28,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/pbstree-swapped.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 43%] Building C object libs/klib/CMakeFiles/klib.dir/pbstree.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/pbstree.c.o -MF CMakeFiles/klib.dir/pbstree.c.o.d -o CMakeFiles/klib.dir/pbstree.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/pbstree.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/pbstree.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/pbstree-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/pbstree.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 43%] Building C object libs/klib/CMakeFiles/klib.dir/printf.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/printf.c.o -MF CMakeFiles/klib.dir/printf.c.o.d -o CMakeFiles/klib.dir/printf.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/printf.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/text.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/printf.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 44%] Building C object libs/klib/CMakeFiles/klib.dir/progressbar.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/progressbar.c.o -MF CMakeFiles/klib.dir/progressbar.c.o.d -o CMakeFiles/klib.dir/progressbar.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/progressbar.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/progressbar.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 44%] Building C object libs/klib/CMakeFiles/klib.dir/ptpersist.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/ptpersist.c.o -MF CMakeFiles/klib.dir/ptpersist.c.o.d -o CMakeFiles/klib.dir/ptpersist.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/ptpersist.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/container.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/trie.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/trie-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/ptpersist.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 44%] Building C object libs/klib/CMakeFiles/klib.dir/ptrie.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -Wstrict-aliasing=0 -MD -MT libs/klib/CMakeFiles/klib.dir/ptrie.c.o -MF CMakeFiles/klib.dir/ptrie.c.o.d -o CMakeFiles/klib.dir/ptrie.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/ptrie.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/pbstree.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/pbstree-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/ptrie.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 44%] Building C object libs/klib/CMakeFiles/klib.dir/qsort.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/qsort.c.o -MF CMakeFiles/klib.dir/qsort.c.o.d -o CMakeFiles/klib.dir/qsort.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/qsort.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/sort.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/qsort.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 44%] Building C object libs/klib/CMakeFiles/klib.dir/rc-idx-tbl.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/rc-idx-tbl.c.o -MF CMakeFiles/klib.dir/rc-idx-tbl.c.o.d -o CMakeFiles/klib.dir/rc-idx-tbl.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/rc-idx-tbl.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/rc-idx-tbl.c:39:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 44%] Building C object libs/klib/CMakeFiles/klib.dir/rc-tbl.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/rc-tbl.c.o -MF CMakeFiles/klib.dir/rc-tbl.c.o.d -o CMakeFiles/klib.dir/rc-tbl.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/rc-tbl.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/rc-tbl.c:38:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 44%] Building C object libs/klib/CMakeFiles/klib.dir/refcount.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/refcount.c.o -MF CMakeFiles/klib.dir/refcount.c.o.d -o CMakeFiles/klib.dir/refcount.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/refcount.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/refcount.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/refcount.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/refcount.c:32:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 44%] Building C object libs/klib/CMakeFiles/klib.dir/report-klib.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/report-klib.c.o -MF CMakeFiles/klib.dir/report-klib.c.o.d -o CMakeFiles/klib.dir/report-klib.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/report-klib.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kapp/args.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/report-klib.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 44%] Building C object libs/klib/CMakeFiles/klib.dir/SHA-32bit.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/SHA-32bit.c.o -MF CMakeFiles/klib.dir/SHA-32bit.c.o.d -o CMakeFiles/klib.dir/SHA-32bit.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/SHA-32bit.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/checksum.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/SHA-32bit.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 45%] Building C object libs/klib/CMakeFiles/klib.dir/SHA-64bit.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/SHA-64bit.c.o -MF CMakeFiles/klib.dir/SHA-64bit.c.o.d -o CMakeFiles/klib.dir/SHA-64bit.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/SHA-64bit.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/checksum.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/SHA-64bit.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 45%] Building C object libs/klib/CMakeFiles/klib.dir/sra-release-version.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/sra-release-version.c.o -MF CMakeFiles/klib.dir/sra-release-version.c.o.d -o CMakeFiles/klib.dir/sra-release-version.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/sra-release-version.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/printf.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/sra-release-version.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 45%] Building C object libs/klib/CMakeFiles/klib.dir/status-rc-strings.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/status-rc-strings.c.o -MF CMakeFiles/klib.dir/status-rc-strings.c.o.d -o CMakeFiles/klib.dir/status-rc-strings.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/status-rc-strings.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/status-rc-strings.c:37:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 45%] Building C object libs/klib/CMakeFiles/klib.dir/status-rc.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/status-rc.c.o -MF CMakeFiles/klib.dir/status-rc.c.o.d -o CMakeFiles/klib.dir/status-rc.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/status-rc.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/writer.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/writer-priv.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/status-rc.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 45%] Building C object libs/klib/CMakeFiles/klib.dir/status.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/status.c.o -MF CMakeFiles/klib.dir/status.c.o.d -o CMakeFiles/klib.dir/status.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/status.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/writer.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/status.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/status.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 45%] Building C object libs/klib/CMakeFiles/klib.dir/symtab.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/symtab.c.o -MF CMakeFiles/klib.dir/symtab.c.o.d -o CMakeFiles/klib.dir/symtab.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/symtab.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/vector.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/symtab.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/symtab.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 45%] Building C object libs/klib/CMakeFiles/klib.dir/text.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/text.c.o -MF CMakeFiles/klib.dir/text.c.o.d -o CMakeFiles/klib.dir/text.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/text.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/text.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/text.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 45%] Building C object libs/klib/CMakeFiles/klib.dir/time.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/time.c.o -MF CMakeFiles/klib.dir/time.c.o.d -o CMakeFiles/klib.dir/time.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/time.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/time.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/time.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 46%] Building C object libs/klib/CMakeFiles/klib.dir/token.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/token.c.o -MF CMakeFiles/klib.dir/token.c.o.d -o CMakeFiles/klib.dir/token.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/token.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/text.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/token.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/token.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 46%] Building C object libs/klib/CMakeFiles/klib.dir/trie.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/trie.c.o -MF CMakeFiles/klib.dir/trie.c.o.d -o CMakeFiles/klib.dir/trie.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/trie.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/container.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/trie.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/trie-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/trie.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 46%] Building C object libs/klib/CMakeFiles/klib.dir/unpack.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/unpack.c.o -MF CMakeFiles/klib.dir/unpack.c.o.d -o CMakeFiles/klib.dir/unpack.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/unpack.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/pack.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/unpack.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 46%] Building C object libs/klib/CMakeFiles/klib.dir/utf8.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/utf8.c.o -MF CMakeFiles/klib.dir/utf8.c.o.d -o CMakeFiles/klib.dir/utf8.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/utf8.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/text.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/utf8.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 46%] Building C object libs/klib/CMakeFiles/klib.dir/vector.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/vector.c.o -MF CMakeFiles/klib.dir/vector.c.o.d -o CMakeFiles/klib.dir/vector.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/vector.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/vector.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/vector.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 46%] Building C object libs/klib/CMakeFiles/klib.dir/vector_namelist.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/vector_namelist.c.o -MF CMakeFiles/klib.dir/vector_namelist.c.o.d -o CMakeFiles/klib.dir/vector_namelist.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/vector_namelist.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/vector_namelist.c:32:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 46%] Building C object libs/klib/CMakeFiles/klib.dir/vlen-encode.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/vlen-encode.c.o -MF CMakeFiles/klib.dir/vlen-encode.c.o.d -o CMakeFiles/klib.dir/vlen-encode.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/vlen-encode.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/vlen-encode.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/vlen-encode.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 46%] Building C object libs/klib/CMakeFiles/klib.dir/writer.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/writer.c.o -MF CMakeFiles/klib.dir/writer.c.o.d -o CMakeFiles/klib.dir/writer.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/writer.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/writer.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/out.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/writer.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 46%] Building C object libs/klib/CMakeFiles/klib.dir/debug.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/debug.c.o -MF CMakeFiles/klib.dir/debug.c.o.d -o CMakeFiles/klib.dir/debug.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/debug.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/debug.h:33,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/debug.c:30:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 47%] Building C object libs/klib/CMakeFiles/klib.dir/unix/misc.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/unix/misc.c.o -MF CMakeFiles/klib.dir/unix/misc.c.o.d -o CMakeFiles/klib.dir/unix/misc.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/unix/misc.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/misc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/unix/misc.c:27:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 47%] Building C object libs/klib/CMakeFiles/klib.dir/unix/syslog.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/unix/syslog.c.o -MF CMakeFiles/klib.dir/unix/syslog.c.o.d -o CMakeFiles/klib.dir/unix/syslog.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/unix/syslog.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/log.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/log-priv.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/unix/syslog.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 47%] Building C object libs/klib/CMakeFiles/klib.dir/unix/systime.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/unix/systime.c.o -MF CMakeFiles/klib.dir/unix/systime.c.o.d -o CMakeFiles/klib.dir/unix/systime.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/unix/systime.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/time.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/unix/systime.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 47%] Building C object libs/klib/CMakeFiles/klib.dir/unix/syswriter.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/unix/syswriter.c.o -MF CMakeFiles/klib.dir/unix/syswriter.c.o.d -o CMakeFiles/klib.dir/unix/syswriter.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/unix/syswriter.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/unix/syswriter.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 47%] Building C object libs/klib/CMakeFiles/klib.dir/linux/syserrcode.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/CMakeFiles/klib.dir/linux/syserrcode.c.o -MF CMakeFiles/klib.dir/linux/syserrcode.c.o.d -o CMakeFiles/klib.dir/linux/syserrcode.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/linux/syserrcode.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/writer.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/writer-priv.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/linux/syserrcode.c:28:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 47%] Linking C static library ../../ilib/libklib.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /usr/pkg/bin/cmake -P CMakeFiles/klib.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/klib.dir/link.txt --verbose=1
/bin/ar qc ../../ilib/libklib.a "CMakeFiles/klib.dir/all-vdb-version.c.o" CMakeFiles/klib.dir/base64.c.o CMakeFiles/klib.dir/bsearch.c.o CMakeFiles/klib.dir/bstpersist.c.o CMakeFiles/klib.dir/btree.c.o CMakeFiles/klib.dir/container.c.o CMakeFiles/klib.dir/cp1252.c.o CMakeFiles/klib.dir/crc32.c.o "CMakeFiles/klib.dir/data-buffer.c.o" CMakeFiles/klib.dir/guid.c.o CMakeFiles/klib.dir/hashfile.c.o CMakeFiles/klib.dir/hashtable.c.o "CMakeFiles/klib.dir/iso8859-1.c.o" CMakeFiles/klib.dir/iso8859.c.o "CMakeFiles/klib.dir/zz_json-grammar.c.o" "CMakeFiles/klib.dir/zz_json-lex.c.o" CMakeFiles/klib.dir/json.c.o "CMakeFiles/klib.dir/judy-vector.c.o" CMakeFiles/klib.dir/ksort.c.o CMakeFiles/klib.dir/log.c.o CMakeFiles/klib.dir/md5.c.o CMakeFiles/klib.dir/namelist.c.o "CMakeFiles/klib.dir/num-gen.c.o" CMakeFiles/klib.dir/out.c.o CMakeFiles/klib.dir/pack.c.o "CMakeFiles/klib.dir/pbstree-impl.c.o" "CMakeFiles/klib.dir/pbstree-swapped.c.o" CMakeFiles/klib.dir/pbstree.c.o CMakeFiles/klib.dir/printf.c.o CMakeFiles/klib.dir/progressbar.c.o CMakeFiles/klib.dir/ptpersist.c.o CMakeFiles/klib.dir/ptrie.c.o CMakeFiles/klib.dir/qsort.c.o "CMakeFiles/klib.dir/rc-idx-tbl.c.o" "CMakeFiles/klib.dir/rc-tbl.c.o" CMakeFiles/klib.dir/refcount.c.o "CMakeFiles/klib.dir/report-klib.c.o" "CMakeFiles/klib.dir/SHA-32bit.c.o" "CMakeFiles/klib.dir/SHA-64bit.c.o" "CMakeFiles/klib.dir/sra-release-version.c.o" "CMakeFiles/klib.dir/status-rc-strings.c.o" "CMakeFiles/klib.dir/status-rc.c.o" CMakeFiles/klib.dir/status.c.o CMakeFiles/klib.dir/symtab.c.o CMakeFiles/klib.dir/text.c.o CMakeFiles/klib.dir/time.c.o CMakeFiles/klib.dir/token.c.o CMakeFiles/klib.dir/trie.c.o CMakeFiles/klib.dir/unpack.c.o CMakeFiles/klib.dir/utf8.c.o CMakeFiles/klib.dir/vector.c.o CMakeFiles/klib.dir/vector_namelist.c.o "CMakeFiles/klib.dir/vlen-encode.c.o" CMakeFiles/klib.dir/writer.c.o CMakeFiles/klib.dir/debug.c.o CMakeFiles/klib.dir/unix/misc.c.o CMakeFiles/klib.dir/unix/syslog.c.o CMakeFiles/klib.dir/unix/systime.c.o CMakeFiles/klib.dir/unix/syswriter.c.o CMakeFiles/klib.dir/linux/syserrcode.c.o
/bin/ranlib ../../ilib/libklib.a
[ 47%] Built target klib
/usr/pkg/bin/bmake -f libs/klib/judy/CMakeFiles/judy.dir/build.make libs/klib/judy/CMakeFiles/judy.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy/CMakeFiles/judy.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/klib/judy/CMakeFiles/judy.dir/build.make libs/klib/judy/CMakeFiles/judy.dir/build
[ 47%] Building C object libs/klib/judy/CMakeFiles/judy.dir/JudyHS.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/judy/CMakeFiles/judy.dir/JudyHS.c.o -MF CMakeFiles/judy.dir/JudyHS.c.o.d -o CMakeFiles/judy.dir/JudyHS.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyHS.c
In file included from /usr/include/string.h:25:0,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyHS.c:10:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 47%] Building C object libs/klib/judy/CMakeFiles/judy.dir/JudyMalloc.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/judy/CMakeFiles/judy.dir/JudyMalloc.c.o -MF CMakeFiles/judy.dir/JudyMalloc.c.o.d -o CMakeFiles/judy.dir/JudyMalloc.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyMalloc.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/../Judy.h:61,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyMalloc.c:32:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 47%] Building C object libs/klib/judy/CMakeFiles/judy.dir/JudySL.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/judy/CMakeFiles/judy.dir/JudySL.c.o -MF CMakeFiles/judy.dir/JudySL.c.o.d -o CMakeFiles/judy.dir/JudySL.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudySL.c
In file included from /usr/include/string.h:25:0,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudySL.c:49:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 47%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit.c.o -MF CMakeFiles/judy.dir/Judy_Bit.c.o.d -o CMakeFiles/judy.dir/Judy_Bit.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/../Judy.h:61,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrivate.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy1.h:70,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy1Tables.64.c:4,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit.c:5:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 48%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Cascade.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Cascade.c.o -MF CMakeFiles/judy.dir/Judy_Bit_Cascade.c.o.d -o CMakeFiles/judy.dir/Judy_Bit_Cascade.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit_Cascade.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/../Judy.h:61,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrivate.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy1.h:70,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyCascade.c:19,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit_Cascade.c:4:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 48%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Count.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Count.c.o -MF CMakeFiles/judy.dir/Judy_Bit_Count.c.o.d -o CMakeFiles/judy.dir/Judy_Bit_Count.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit_Count.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/../Judy.h:61,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrivate.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy1.h:70,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyCount.c:43,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit_Count.c:4:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 48%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Decascade.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Decascade.c.o -MF CMakeFiles/judy.dir/Judy_Bit_Decascade.c.o.d -o CMakeFiles/judy.dir/Judy_Bit_Decascade.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit_Decascade.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/../Judy.h:61,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrivate.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy1.h:70,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyDecascade.c:33,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit_Decascade.c:4:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 48%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Next.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Next.c.o -MF CMakeFiles/judy.dir/Judy_Bit_Next.c.o.d -o CMakeFiles/judy.dir/Judy_Bit_Next.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit_Next.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/../Judy.h:61,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrivate.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy1.h:70,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrevNext.c:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyNext.c:2,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit_Next.c:4:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 48%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_NextEmpty.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_NextEmpty.c.o -MF CMakeFiles/judy.dir/Judy_Bit_NextEmpty.c.o.d -o CMakeFiles/judy.dir/Judy_Bit_NextEmpty.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit_NextEmpty.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/../Judy.h:61,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrivate.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy1.h:70,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrevNextEmpty.c:55,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyNextEmpty.c:2,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit_NextEmpty.c:4:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 48%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Prev.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Prev.c.o -MF CMakeFiles/judy.dir/Judy_Bit_Prev.c.o.d -o CMakeFiles/judy.dir/Judy_Bit_Prev.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit_Prev.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/../Judy.h:61,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrivate.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy1.h:70,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrevNext.c:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrev.c:2,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit_Prev.c:4:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 48%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Word.c.o -MF CMakeFiles/judy.dir/Judy_Word.c.o.d -o CMakeFiles/judy.dir/Judy_Word.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/../Judy.h:61,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrivate.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyL.h:71,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyLTables.64.c:4,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word.c:5:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 48%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Cascade.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Cascade.c.o -MF CMakeFiles/judy.dir/Judy_Word_Cascade.c.o.d -o CMakeFiles/judy.dir/Judy_Word_Cascade.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word_Cascade.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/../Judy.h:61,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrivate.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyL.h:71,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyCascade.c:21,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word_Cascade.c:4:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 49%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Count.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Count.c.o -MF CMakeFiles/judy.dir/Judy_Word_Count.c.o.d -o CMakeFiles/judy.dir/Judy_Word_Count.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word_Count.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/../Judy.h:61,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrivate.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyL.h:71,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyCount.c:45,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word_Count.c:4:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 49%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Decascade.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Decascade.c.o -MF CMakeFiles/judy.dir/Judy_Word_Decascade.c.o.d -o CMakeFiles/judy.dir/Judy_Word_Decascade.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word_Decascade.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/../Judy.h:61,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrivate.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyL.h:71,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyDecascade.c:36,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word_Decascade.c:4:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 49%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Next.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Next.c.o -MF CMakeFiles/judy.dir/Judy_Word_Next.c.o.d -o CMakeFiles/judy.dir/Judy_Word_Next.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word_Next.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/../Judy.h:61,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrivate.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyL.h:71,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrevNext.c:37,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyNext.c:2,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word_Next.c:4:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 49%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_NextEmpty.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_NextEmpty.c.o -MF CMakeFiles/judy.dir/Judy_Word_NextEmpty.c.o.d -o CMakeFiles/judy.dir/Judy_Word_NextEmpty.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word_NextEmpty.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/../Judy.h:61,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrivate.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyL.h:71,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrevNextEmpty.c:57,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyNextEmpty.c:2,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word_NextEmpty.c:4:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 49%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Prev.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -rdynamic -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Prev.c.o -MF CMakeFiles/judy.dir/Judy_Word_Prev.c.o.d -o CMakeFiles/judy.dir/Judy_Word_Prev.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word_Prev.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/../Judy.h:61,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrivate.h:25,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyL.h:71,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrevNext.c:37,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyPrev.c:2,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word_Prev.c:4:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 49%] Linking C static library ../../../ilib/libjudy.a
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /usr/pkg/bin/cmake -P CMakeFiles/judy.dir/cmake_clean_target.cmake
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/judy.dir/link.txt --verbose=1
/bin/ar qc ../../../ilib/libjudy.a CMakeFiles/judy.dir/JudyHS.c.o CMakeFiles/judy.dir/JudyMalloc.c.o CMakeFiles/judy.dir/JudySL.c.o CMakeFiles/judy.dir/Judy_Bit.c.o CMakeFiles/judy.dir/Judy_Bit_Cascade.c.o CMakeFiles/judy.dir/Judy_Bit_Count.c.o CMakeFiles/judy.dir/Judy_Bit_Decascade.c.o CMakeFiles/judy.dir/Judy_Bit_Next.c.o CMakeFiles/judy.dir/Judy_Bit_NextEmpty.c.o CMakeFiles/judy.dir/Judy_Bit_Prev.c.o CMakeFiles/judy.dir/Judy_Word.c.o CMakeFiles/judy.dir/Judy_Word_Cascade.c.o CMakeFiles/judy.dir/Judy_Word_Count.c.o CMakeFiles/judy.dir/Judy_Word_Decascade.c.o CMakeFiles/judy.dir/Judy_Word_Next.c.o CMakeFiles/judy.dir/Judy_Word_NextEmpty.c.o CMakeFiles/judy.dir/Judy_Word_Prev.c.o
/bin/ranlib ../../../ilib/libjudy.a
[ 49%] Built target judy
/usr/pkg/bin/bmake -f libs/kns/CMakeFiles/kns.dir/build.make libs/kns/CMakeFiles/kns.dir/depend
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns/CMakeFiles/kns.dir/DependInfo.cmake "--color="
/usr/pkg/bin/bmake -f libs/kns/CMakeFiles/kns.dir/build.make libs/kns/CMakeFiles/kns.dir/build
[ 49%] Building C object libs/kns/CMakeFiles/kns.dir/stream-from-buffer.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kns/CMakeFiles/kns.dir/stream-from-buffer.c.o -MF CMakeFiles/kns.dir/stream-from-buffer.c.o.d -o CMakeFiles/kns.dir/stream-from-buffer.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/stream-from-buffer.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/rc.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/stream-from-buffer.c:32:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 49%] Building C object libs/kns/CMakeFiles/kns.dir/kns_manager-ext.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kns/CMakeFiles/kns.dir/kns_manager-ext.c.o -MF CMakeFiles/kns.dir/kns_manager-ext.c.o.d -o CMakeFiles/kns.dir/kns_manager-ext.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/kns_manager-ext.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kns/manager.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kns/manager-ext.h:30,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/kns_manager-ext.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
[ 49%] Building C object libs/kns/CMakeFiles/kns.dir/manager.c.o
cd /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /home/pbulk/build/biology/sra-tools/work/.cwrapper/bin/cc -DDEBUG -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/linux -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -rdynamic -MD -MT libs/kns/CMakeFiles/kns.dir/manager.c.o -MF CMakeFiles/kns.dir/manager.c.o.d -o CMakeFiles/kns.dir/manager.c.o -c /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c
In file included from /usr/include/stdint.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/stdint.h:9,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfc/defs.h:34,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/klib/defs.h:31,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfg/config.h:35,
from /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c:29:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
# warning _FORTIFY_SOURCE requires compiling with optimization (-O)
^
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c:93:15: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘char’
_Thread_local char kns_manager_user_agent_append [ 4096 ] = { 0 };
^
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c:94:15: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘char’
_Thread_local char kns_manager_clientip [ KNSMANAGER_STRING_MAX ] = { 0 };
^
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c:95:15: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘char’
_Thread_local char kns_manager_sessionid [ KNSMANAGER_STRING_MAX ] = { 0 };
^
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c:96:15: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘char’
_Thread_local char kns_manager_pagehitid [ KNSMANAGER_STRING_MAX ] = { 0 };
^
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c:97:15: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘char’
_Thread_local char kns_manager_ua_suffix [ KNSMANAGER_STRING_MAX ] = { 0 };
^
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c: In function ‘KNSManagerGetUserAgent’:
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c:1202:19: error: ‘kns_manager_clientip’ undeclared (first use in this function)
if ( strlen ( kns_manager_clientip )
^
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c:1202:19: note: each undeclared identifier is reported only once for each function it appears in
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c:1203:21: error: ‘kns_manager_sessionid’ undeclared (first use in this function)
|| strlen ( kns_manager_sessionid )
^
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c:1204:21: error: ‘kns_manager_pagehitid’ undeclared (first use in this function)
|| strlen ( kns_manager_pagehitid ) ) {
^
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c:1259:30: error: ‘kns_manager_user_agent_append’ undeclared (first use in this function)
rc = string_printf ( kns_manager_user_agent_append, sizeof kns_manager_user_agent_append, NULL,
^
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c:1261:42: error: ‘kns_manager_ua_suffix’ undeclared (first use in this function)
kns_manager_user_agent.base, kns_manager_ua_suffix, platform.base,
^
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c: In function ‘KNSManagerSetUserAgentSuffix’:
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c:1415:19: error: ‘kns_manager_ua_suffix’ undeclared (first use in this function)
string_copy ( kns_manager_ua_suffix, sizeof kns_manager_ua_suffix, suffix, len );
^
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c: In function ‘KNSManagerGetUserAgentSuffix’:
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c:1424:15: error: ‘kns_manager_ua_suffix’ undeclared (first use in this function)
*suffix = kns_manager_ua_suffix;
^
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c: In function ‘KNSManagerSetClientIP’:
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c:1440:19: error: ‘kns_manager_clientip’ undeclared (first use in this function)
string_copy ( kns_manager_clientip, sizeof kns_manager_clientip, clientip, len );
^
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c: In function ‘KNSManagerSetSessionID’:
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c:1456:19: error: ‘kns_manager_sessionid’ undeclared (first use in this function)
string_copy ( kns_manager_sessionid, sizeof kns_manager_sessionid, sessionid, len );
^
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c: In function ‘KNSManagerSetPageHitID’:
/home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c:1473:19: error: ‘kns_manager_pagehitid’ undeclared (first use in this function)
string_copy ( kns_manager_pagehitid, sizeof kns_manager_pagehitid, pagehitid, len );
^
*** Error code 1
Stop.
bmake[4]: stopped in /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build
*** Error code 1
Stop.
bmake[3]: stopped in /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build
*** Error code 1
Stop.
bmake[2]: stopped in /home/pbulk/build/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build
*** Error code 1
Stop.
bmake[1]: stopped in /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/biology/sra-tools
*** Error code 1
Stop.
bmake: stopped in /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/biology/sra-tools