+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /usr/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=310 WRKLOG=/tmp/bulklog/py310-tables-3.7.0nb2/work.log + su pbulk -c '"$@"' make /usr/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=310 WRKLOG=/tmp/bulklog/py310-tables-3.7.0nb2/work.log => Bootstrap dependency digest>=20211023: found digest-20220214 ===> Building for py310-tables-3.7.0nb2 (cd /home/pbulk/build/math/py-tables/work/tables-3.7.0/ && /bin/env USETOOLS=no PTHREAD_CFLAGS=\ -pthread\ PTHREAD_LDFLAGS=\ -pthread PTHREAD_LIBS=-lpthread\ -lrt PTHREADBASE=/usr DL_CFLAGS= DL_LDFLAGS= DL_LIBS= NPY_BLAS_LIBS=-lblas NPY_LAPACK_LIBS=-llapack\ -lblas NPY_CBLAS_LIBS=-lcblas\ -lblas PYTHON=/usr/pkg/bin/python3.10 CC=cc CFLAGS=-pipe\ -O2\ -I/usr/pkg/include\ -I/usr/include\ -I/usr/pkg/include/python3.10 CPPFLAGS=-I/usr/pkg/include/netlib\ -I/usr/pkg/include\ -I/usr/include\ -I/usr/pkg/include/python3.10 CXX=c++ CXXFLAGS=-pipe\ -O2\ -I/usr/pkg/include\ -I/usr/include\ -I/usr/pkg/include/python3.10 COMPILER_RPATH_FLAG=-Wl,-R F77=gfortran FC=gfortran FFLAGS=-O LANG=C LC_ALL=C LC_COLLATE=C LC_CTYPE=C LC_MESSAGES=C LC_MONETARY=C LC_NUMERIC=C LC_TIME=C LDFLAGS=-L/usr/pkg/gcc7/lib/gcc/x86_64-redhat-linux/7.5.0\ -Wl,-R/usr/pkg/gcc7/lib/gcc/x86_64-redhat-linux/7.5.0\ -L/usr/pkg/gcc7/lib64\ -Wl,-R/usr/pkg/gcc7/lib64\ -Wl,-zrelro\ -L/usr/pkg/lib\ -Wl,-R/usr/pkg/lib\ -L/usr/lib64\ -Wl,-R/usr/lib64 LINKER_RPATH_FLAG=-R PATH=/home/pbulk/build/math/py-tables/work/.cwrapper/bin:/home/pbulk/build/math/py-tables/work/.buildlink/bin:/home/pbulk/build/math/py-tables/work/.gcc/bin:/home/pbulk/build/math/py-tables/work/.tools/bin:/usr/pkg/bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/bin PREFIX=/usr/pkg MAKELEVEL=0 CONFIG_SITE= PKG_SYSCONFDIR=/usr/pkg/etc HOME=/home/pbulk/build/math/py-tables/work/.home CWRAPPERS_CONFIG_DIR=/home/pbulk/build/math/py-tables/work/.cwrapper/config CPP=cpp LOCALBASE=/usr/pkg X11BASE=/usr/pkg PKGMANDIR=man PKGINFODIR=info PKGGNUDIR=gnu/ MAKECONF=/dev/null OBJECT_FMT=ELF USETOOLS=no BSD_INSTALL_PROGRAM=/bin/install\ -c\ -s\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_SCRIPT=/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_LIB=/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_DATA=/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 644 BSD_INSTALL_MAN=/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 644 BSD_INSTALL=/bin/install BSD_INSTALL_PROGRAM_DIR=/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_SCRIPT_DIR=/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_LIB_DIR=/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_DATA_DIR=/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_MAN_DIR=/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_GAME=/bin/install\ -c\ -s\ -o\ pbulk\ -g\ pbulk\ -m\ 2555 BSD_INSTALL_GAME_DATA=/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 664 BSD_INSTALL_GAME_DIR=/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 775 INSTALL_INFO= MAKEINFO=/home/pbulk/build/math/py-tables/work/.tools/bin/makeinfo FLEX= BISON= ITSTOOL=/home/pbulk/build/math/py-tables/work/.tools/bin/itstool GDBUS_CODEGEN=/home/pbulk/build/math/py-tables/work/.tools/bin/gdbus-codegen PKG_CONFIG=/home/pbulk/build/math/py-tables/work/.tools/bin/pkg-config PKG_CONFIG_LIBDIR=/home/pbulk/build/math/py-tables/work/.buildlink/lib64/pkgconfig:/home/pbulk/build/math/py-tables/work/.buildlink/lib/pkgconfig:/home/pbulk/build/math/py-tables/work/.buildlink/share/pkgconfig PKG_CONFIG_LOG=/home/pbulk/build/math/py-tables/work/.pkg-config.log PKG_CONFIG_PATH= CWRAPPERS_CONFIG_DIR=/home/pbulk/build/math/py-tables/work/.cwrapper/config /usr/pkg/bin/python3.10 setup.py build --blosc=/usr/pkg --bzip2=/usr/pkg --hdf5=/usr/pkg --lzo=/usr/pkg -j2) /home/pbulk/build/math/py-tables/work/tables-3.7.0/setup.py:18: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources Error compiling Cython file: ------------------------------------------------------------ ... def _dump_h5_backtrace(): cdef object bt = [] if H5Ewalk(H5E_DEFAULT, H5E_WALK_DOWNWARD, e_walk_cb, bt) < 0: ^ ------------------------------------------------------------ tables/utilsextension.pyx:387:47: Cannot assign type 'herr_t (unsigned int, const H5E_error_t *, void *) except? -1 nogil' to 'H5E_walk_t'. Exception values are incompatible. Suggest adding 'noexcept' to type 'herr_t (unsigned int, const H5E_error_t *, void *) except? -1 nogil'. * Using Python 3.10.13 (main, Nov 29 2023, 23:08:44) [GCC 4.8.5 20150623 (Red Hat 4.8.5-44)] * Found cython 3.0.6 * USE_PKGCONFIG: True * Found HDF5 headers at ``/usr/pkg/include``, library at ``/usr/pkg/lib``. * Found LZO 2 headers at ``/usr/pkg/include``, library at ``/usr/pkg/lib``. * Skipping detection of LZO 1 since LZO 2 has already been found. * Found bzip2 headers at ``/usr/pkg/include``, library at ``/usr/pkg/lib``. * Found blosc headers at ``/usr/pkg/include``, library at ``/usr/pkg/lib``. Compiling tables/utilsextension.pyx because it changed. [1/1] Cythonizing tables/utilsextension.pyx Traceback (most recent call last): File "/home/pbulk/build/math/py-tables/work/tables-3.7.0/setup.py", line 834, in cython_extfiles = get_cython_extfiles(cython_extnames) File "/home/pbulk/build/math/py-tables/work/tables-3.7.0/setup.py", line 829, in get_cython_extfiles cythonize(str(extpfile), language_level="2") File "/usr/pkg/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 1154, in cythonize cythonize_one(*args) File "/usr/pkg/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 1321, in cythonize_one raise CompileError(None, pyx_file) Cython.Compiler.Errors.CompileError: tables/utilsextension.pyx *** Error code 1 Stop. bmake[1]: stopped in /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/math/py-tables *** Error code 1 Stop. bmake: stopped in /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/math/py-tables