+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /usr/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=39 WRKLOG=/tmp/bulklog/py39-h5py-3.2.1nb1/work.log + su pbulk -c '"$@"' make /usr/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=39 WRKLOG=/tmp/bulklog/py39-h5py-3.2.1nb1/work.log => Bootstrap dependency digest>=20211023: found digest-20220214 ===> Building for py39-h5py-3.2.1nb1 (cd /home/pbulk/build/devel/py-h5py/work/h5py-3.2.1/ && /bin/env HDF5_DIR=/usr/pkg USETOOLS=no PTHREAD_CFLAGS=\ -pthread\ PTHREAD_LDFLAGS=\ -pthread PTHREAD_LIBS=-lpthread\ -lrt PTHREADBASE=/usr DL_CFLAGS= DL_LDFLAGS= DL_LIBS= NPY_BLAS_LIBS=-lblas NPY_LAPACK_LIBS=-llapack\ -lblas NPY_CBLAS_LIBS=-lcblas\ -lblas PYTHON=/usr/pkg/bin/python3.9 CC=cc CFLAGS=-pipe\ -O2\ -pipe\ -O2\ -D_FORTIFY_SOURCE=2\ -I/usr/pkg/include\ -I/usr/include\ -I/usr/pkg/include/python3.9 CPPFLAGS=-I/usr/pkg/include/netlib\ -I/usr/pkg/include\ -I/usr/include\ -I/usr/pkg/include/python3.9 CXX=c++ CXXFLAGS=-pipe\ -O2\ -pipe\ -O2\ -D_FORTIFY_SOURCE=2\ -I/usr/pkg/include\ -I/usr/include\ -I/usr/pkg/include/python3.9 COMPILER_RPATH_FLAG=-Wl,-R F77=f77 FC=f77 FFLAGS=-O LANG=C LC_ALL=C LC_COLLATE=C LC_CTYPE=C LC_MESSAGES=C LC_MONETARY=C LC_NUMERIC=C LC_TIME=C LDFLAGS=-Wl,-zrelro\ -L/usr/pkg/lib\ -Wl,-R/usr/pkg/lib\ -L/usr/lib64\ -Wl,-R/usr/lib64 LINKER_RPATH_FLAG=-R PATH=/home/pbulk/build/devel/py-h5py/work/.cwrapper/bin:/home/pbulk/build/devel/py-h5py/work/.buildlink/bin:/home/pbulk/build/devel/py-h5py/work/.gcc/bin:/home/pbulk/build/devel/py-h5py/work/.tools/bin:/usr/pkg/bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/bin PREFIX=/usr/pkg MAKELEVEL=0 CONFIG_SITE= PKG_SYSCONFDIR=/usr/pkg/etc CXXCPP=cpp HOME=/home/pbulk/build/devel/py-h5py/work/.home CWRAPPERS_CONFIG_DIR=/home/pbulk/build/devel/py-h5py/work/.cwrapper/config CPP=cpp LOCALBASE=/usr/pkg X11BASE=/usr/pkg PKGMANDIR=man PKGINFODIR=info PKGGNUDIR=gnu/ MAKECONF=/dev/null OBJECT_FMT=ELF USETOOLS=no BSD_INSTALL_PROGRAM=/bin/install\ -c\ -s\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_SCRIPT=/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_LIB=/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_DATA=/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 644 BSD_INSTALL_MAN=/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 644 BSD_INSTALL=/bin/install BSD_INSTALL_PROGRAM_DIR=/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_SCRIPT_DIR=/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_LIB_DIR=/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_DATA_DIR=/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_MAN_DIR=/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_GAME=/bin/install\ -c\ -s\ -o\ pbulk\ -g\ pbulk\ -m\ 2555 BSD_INSTALL_GAME_DATA=/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 664 BSD_INSTALL_GAME_DIR=/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 775 INSTALL_INFO= MAKEINFO=/home/pbulk/build/devel/py-h5py/work/.tools/bin/makeinfo FLEX= BISON= ITSTOOL=/home/pbulk/build/devel/py-h5py/work/.tools/bin/itstool GDBUS_CODEGEN=/home/pbulk/build/devel/py-h5py/work/.tools/bin/gdbus-codegen PKG_CONFIG=/home/pbulk/build/devel/py-h5py/work/.tools/bin/pkg-config PKG_CONFIG_LIBDIR=/home/pbulk/build/devel/py-h5py/work/.buildlink/lib64/pkgconfig:/home/pbulk/build/devel/py-h5py/work/.buildlink/lib/pkgconfig:/home/pbulk/build/devel/py-h5py/work/.buildlink/share/pkgconfig PKG_CONFIG_LOG=/home/pbulk/build/devel/py-h5py/work/.pkg-config.log PKG_CONFIG_PATH= CWRAPPERS_CONFIG_DIR=/home/pbulk/build/devel/py-h5py/work/.cwrapper/config /usr/pkg/bin/python3.9 setup.py build -j2) running build running build_py creating build creating build/lib.linux-x86_64-cpython-39 creating build/lib.linux-x86_64-cpython-39/h5py copying h5py/version.py -> build/lib.linux-x86_64-cpython-39/h5py copying h5py/h5py_warnings.py -> build/lib.linux-x86_64-cpython-39/h5py copying h5py/__init__.py -> build/lib.linux-x86_64-cpython-39/h5py copying h5py/ipy_completer.py -> build/lib.linux-x86_64-cpython-39/h5py creating build/lib.linux-x86_64-cpython-39/h5py/_hl copying h5py/_hl/files.py -> build/lib.linux-x86_64-cpython-39/h5py/_hl copying h5py/_hl/base.py -> build/lib.linux-x86_64-cpython-39/h5py/_hl copying h5py/_hl/selections2.py -> build/lib.linux-x86_64-cpython-39/h5py/_hl copying h5py/_hl/filters.py -> build/lib.linux-x86_64-cpython-39/h5py/_hl copying h5py/_hl/attrs.py -> build/lib.linux-x86_64-cpython-39/h5py/_hl copying h5py/_hl/group.py -> build/lib.linux-x86_64-cpython-39/h5py/_hl copying h5py/_hl/__init__.py -> build/lib.linux-x86_64-cpython-39/h5py/_hl copying h5py/_hl/selections.py -> build/lib.linux-x86_64-cpython-39/h5py/_hl copying h5py/_hl/compat.py -> build/lib.linux-x86_64-cpython-39/h5py/_hl copying h5py/_hl/dims.py -> build/lib.linux-x86_64-cpython-39/h5py/_hl copying h5py/_hl/datatype.py -> build/lib.linux-x86_64-cpython-39/h5py/_hl copying h5py/_hl/vds.py -> build/lib.linux-x86_64-cpython-39/h5py/_hl copying h5py/_hl/dataset.py -> build/lib.linux-x86_64-cpython-39/h5py/_hl creating build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_h5o.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_big_endian_file.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_dtype.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_file2.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_h5t.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_attribute_create.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_dataset.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_base.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_completions.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_objects.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/common.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_h5d_direct_chunk.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_dataset_getitem.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_h5f.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_datatype.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/__init__.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_file_image.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_errors.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_h5p.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_h5.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_dataset_swmr.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/conftest.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_attrs_data.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_group.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_dimension_scales.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_filters.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_slicing.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_file.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_h5pl.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_attrs.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_dims_dimensionproxy.py -> build/lib.linux-x86_64-cpython-39/h5py/tests copying h5py/tests/test_selections.py -> build/lib.linux-x86_64-cpython-39/h5py/tests creating build/lib.linux-x86_64-cpython-39/h5py/tests/data_files copying h5py/tests/data_files/__init__.py -> build/lib.linux-x86_64-cpython-39/h5py/tests/data_files creating build/lib.linux-x86_64-cpython-39/h5py/tests/test_vds copying h5py/tests/test_vds/test_highlevel_vds.py -> build/lib.linux-x86_64-cpython-39/h5py/tests/test_vds copying h5py/tests/test_vds/test_lowlevel_vds.py -> build/lib.linux-x86_64-cpython-39/h5py/tests/test_vds copying h5py/tests/test_vds/__init__.py -> build/lib.linux-x86_64-cpython-39/h5py/tests/test_vds copying h5py/tests/test_vds/test_virtual_source.py -> build/lib.linux-x86_64-cpython-39/h5py/tests/test_vds copying h5py/tests/data_files/vlen_string_s390x.h5 -> build/lib.linux-x86_64-cpython-39/h5py/tests/data_files copying h5py/tests/data_files/vlen_string_dset_utc.h5 -> build/lib.linux-x86_64-cpython-39/h5py/tests/data_files copying h5py/tests/data_files/vlen_string_dset.h5 -> build/lib.linux-x86_64-cpython-39/h5py/tests/data_files running build_ext Traceback (most recent call last): File "/usr/pkg/lib/python3.9/site-packages/numpy/core/__init__.py", line 23, in from . import multiarray File "/usr/pkg/lib/python3.9/site-packages/numpy/core/multiarray.py", line 10, in from . import overrides File "/usr/pkg/lib/python3.9/site-packages/numpy/core/overrides.py", line 6, in from numpy.core._multiarray_umath import ( ImportError: /usr/pkg/lib/python3.9/site-packages/numpy/core/_multiarray_umath.so: undefined symbol: __builtin_mul_overflow During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/pbulk/build/devel/py-h5py/work/h5py-3.2.1/setup.py", line 156, in setup( File "/usr/pkg/lib/python3.9/site-packages/setuptools/__init__.py", line 87, in setup return distutils.core.setup(**attrs) File "/usr/pkg/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/pkg/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/pkg/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 973, in run_commands self.run_command(cmd) File "/usr/pkg/lib/python3.9/site-packages/setuptools/dist.py", line 1217, in run_command super().run_command(command) File "/usr/pkg/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 992, in run_command cmd_obj.run() File "/usr/pkg/lib/python3.9/site-packages/setuptools/command/build.py", line 24, in run super().run() File "/usr/pkg/lib/python3.9/site-packages/setuptools/_distutils/command/build.py", line 132, in run self.run_command(cmd_name) File "/usr/pkg/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 319, in run_command self.distribution.run_command(command) File "/usr/pkg/lib/python3.9/site-packages/setuptools/dist.py", line 1217, in run_command super().run_command(command) File "/usr/pkg/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 992, in run_command cmd_obj.run() File "/home/pbulk/build/devel/py-h5py/work/h5py-3.2.1/setup_build.py", line 123, in run import numpy File "/usr/pkg/lib/python3.9/site-packages/numpy/__init__.py", line 144, in from . import core File "/usr/pkg/lib/python3.9/site-packages/numpy/core/__init__.py", line 49, in raise ImportError(msg) ImportError: IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! Importing the numpy C-extensions failed. This error can happen for many reasons, often due to issues with your setup or how NumPy was installed. We have compiled some common reasons and troubleshooting tips at: https://numpy.org/devdocs/user/troubleshooting-importerror.html Please note and check the following: * The Python version is: Python3.9 from "/usr/pkg/bin/python3.9" * The NumPy version is: "1.22.4" and make sure that they are the versions you expect. Please carefully study the documentation linked above for further help. Original error was: /usr/pkg/lib/python3.9/site-packages/numpy/core/_multiarray_umath.so: undefined symbol: __builtin_mul_overflow *** Error code 1 Stop. bmake[1]: stopped in /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/devel/py-h5py *** Error code 1 Stop. bmake: stopped in /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/devel/py-h5py