+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /usr/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=310 WRKLOG=/tmp/bulklog/py310-scipy-1.8.1nb3/work.log + su pbulk -c '"$@"' make /usr/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=310 WRKLOG=/tmp/bulklog/py310-scipy-1.8.1nb3/work.log => Bootstrap dependency digest>=20211023: found digest-20220214 => Checksum BLAKE2s OK for scipy-1.8.1.tar.gz => Checksum SHA512 OK for scipy-1.8.1.tar.gz ===> Installing dependencies for py310-scipy-1.8.1nb3 ========================================================================== The following variables will affect the build process of this package, py310-scipy-1.8.1nb3. Their current value is shown below: * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp * PYTHON_VERSION_DEFAULT = 310 Based on these variables, the following variables have been set: * BLAS_INCLUDES = -I/usr/pkg/include/netlib * BLAS_LIBS = -lblas * BLAS_TYPE = netlib * CBLAS_LIBS = -lcblas -lblas * LAPACKE_LIBS = -llapacke -llapack -lblas * LAPACK_LIBS = -llapack -lblas * PYPACKAGE = python310 You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/usr/pkg/bin/bmake clean' after the changes. ========================================================================== => Tool dependency py310-setuptools-[0-9]*: found py310-setuptools-63.4.3 => Tool dependency mktools-[0-9]*: found mktools-20220614 => Tool dependency nbpatch-[0-9]*: found nbpatch-20151107 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Build dependency boost-headers-1.78.*: found boost-headers-1.78.0 => Build dependency boost-headers>=1.77.0nb1: found boost-headers-1.78.0 => Build dependency py310-pybind11>=2.5.0: found py310-pybind11-2.9.2 => Build dependency py310-pythran>=0.10.0: found py310-pythran-0.11.0 => Full dependency py310-pybind11-[0-9]*: found py310-pybind11-2.9.2 => Full dependency py310-pythran>=0.9.11: found py310-pythran-0.11.0 => Full dependency gcc7>=7.5.0nb6: found gcc7-7.5.0nb6 => Full dependency py310-cython>=0.12.1: found py310-cython-0.29.32 => Full dependency fftw>=3.3.10nb1: found fftw-3.3.10nb1 => Full dependency py310-numpy>=1.20.3nb1: found py310-numpy-1.22.4nb2 ===> Overriding tools for py310-scipy-1.8.1nb3 ===> Extracting for py310-scipy-1.8.1nb3 ===> Patching for py310-scipy-1.8.1nb3 => Applying pkgsrc patches for py310-scipy-1.8.1nb3 => Verifying /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/math/py-scipy/patches/patch-scipy_spatial_ckdtree_src_ckdtree__decl.h => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/math/py-scipy/patches/patch-scipy_spatial_ckdtree_src_ckdtree__decl.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_spatial_ckdtree_src_ckdtree__decl.h,v 1.2 2022/05/27 16:59:50 tnn Exp $ | |Many errors like this: |scipy/spatial/ckdtree/src/query_pairs.cxx:110:16: error: argument to '__builtin_prefetch' must be a constant integer | |--- scipy/spatial/ckdtree/src/ckdtree_decl.h.orig 2022-04-29 21:14:38.041529700 +0000 |+++ scipy/spatial/ckdtree/src/ckdtree_decl.h -------------------------- Patching file scipy/spatial/ckdtree/src/ckdtree_decl.h using Plan A... Hunk #1 succeeded at 10. done => Verifying /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/math/py-scipy/patches/patch-scipy_special___logit.h => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/math/py-scipy/patches/patch-scipy_special___logit.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_special___logit.h,v 1.2 2022/05/13 09:49:31 tnn Exp $ | |py-scipy: work around undefined PLT symbol "log1pl" on NetBSD | |--- scipy/special/_logit.h.orig 2022-01-29 22:59:08.000000000 +0000 |+++ scipy/special/_logit.h -------------------------- Patching file scipy/special/_logit.h using Plan A... Hunk #1 succeeded at 31. Hunk #2 succeeded at 51. done => Verifying /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/math/py-scipy/patches/patch-scipy_special___round.h => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/math/py-scipy/patches/patch-scipy_special___round.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_special___round.h,v 1.3 2018/09/03 09:04:24 wiz Exp $ | |Chunk 1: SunOS fix |https://github.com/scipy/scipy/issues/9214 | |Chunk 2: |This conditional is just wrong, when built with c++, __STDC_VERSION__ |is not defined. Make a cheezy fix which insists on when |built with C++. |https://github.com/scipy/scipy/issues/9213 | |--- scipy/special/_round.h.orig 2018-05-05 17:10:11.000000000 +0000 |+++ scipy/special/_round.h -------------------------- Patching file scipy/special/_round.h using Plan A... Hunk #1 succeeded at 9. Hunk #2 succeeded at 53. done => Verifying /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/math/py-scipy/patches/patch-scipy_stats__unuran_setup.py => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-el7-trunk-x86_64/math/py-scipy/patches/patch-scipy_stats__unuran_setup.py Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_stats__unuran_setup.py,v 1.1 2022/07/30 16:13:48 he Exp $ | |On NetBSD/powerpc, you can't build with _ISOC99_SOURCE defined, |the include of deep down in the python headers will fail |with undefined types. | |--- ./scipy/stats/_unuran/setup.py.orig 2022-05-16 12:36:53.864307900 +0000 |+++ ./scipy/stats/_unuran/setup.py -------------------------- Patching file ./scipy/stats/_unuran/setup.py using Plan A... Hunk #1 succeeded at 95. done ===> Creating toolchain wrappers for py310-scipy-1.8.1nb3 ===> Configuring for py310-scipy-1.8.1nb3 => Replacing python interpreter in scipy/sparse/linalg/isolve/tests/test_gcrotmk.py. WARNING: [replace-interpreter] Skipping non-existent file "scipy/sparse/linalg/isolve/tests/test_gcrotmk.py". => Checking for portability problems in extracted files /bin/rm -f -r /home/pbulk/build/math/py-scipy/work/scipy-1.8.1/scipy/_lib/boost/boost /bin/ln -s /home/pbulk/build/math/py-scipy/work/.buildlink/include/boost /home/pbulk/build/math/py-scipy/work/scipy-1.8.1/scipy/_lib/boost/boost