=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Building for ncbi-blast+-2.14.1nb4 if test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.flat; then \ cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -f Makefile.flat; \ elif test -s ""; then \ cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -j1 all_p; \ else \ cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -j1 all_r; \ fi gmake[1]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' Build session ID: ABAB2557-35BA-479B-AA80-85E8581853E0 /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/ctools/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ctools/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/ctools/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/gui/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gui/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/gui/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/sample/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT sample/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/sample/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/internal/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT internal/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/internal/Makefile /opt/pkg/bin/gmake -C corelib -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/jaeger/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT jaeger/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger/Makefile gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake[4] (Makefile.precompile): Nothing to be done for `all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: *** No rule to make target '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: *** No rule to make target '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=corelib -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_os_unix.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/blob_storage.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ddumpable.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/env_reg.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/metareg.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_config.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_param.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_process.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_safe_static.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_signal.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_stack.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_system.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiapp.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiargs.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiatomic.cpp. Updating dependency information for ncbicfg.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidbg.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag_p.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidll.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbienv.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexec.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiexpt.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbifile.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimempool.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbimtx.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiobj.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbireg.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistr.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbistre.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbithr.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbitime.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/obj_store.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/plugin_manager_store.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/rwstreambuf.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/stream_utils.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/syslog.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/version.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_ctx.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_control.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/expr.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_strings.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/resource_info.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/interprocess_lock.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_autoinit.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/perf_log.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_toolkit.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbierror.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_url.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_cookies.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/guard.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_message.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/request_status.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_fast.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_pool_balancer.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/env_reg.cpp -o env_reg.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/metareg.cpp -o metareg.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 ncbicfg.c -o ncbicfg.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:956:20: warning: 'GetProperties' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:464:5: note: 'GetProperties' has been explicitly marked deprecated here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp:3755:26: warning: 'SetupDiag_AppSpecific' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiapp_api.hpp:393:5: note: 'SetupDiag_AppSpecific' has been explicitly marked deprecated here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o 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ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o ncbi_fast.o ncbi_dbsvcmapper.o ncbi_pool_balancer.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxncbi.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxncbi.a /bin/ln -f .xncbi.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xncbi.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib TMPL=test_mt -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/corelib/test_mt.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT 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'/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: *** No rule to make target '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/test' /opt/pkg/bin/gmake -C jaeger -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib/jaeger' gmake[2]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -C util -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/diff/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT diff/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/image/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT image/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/qparse/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT qparse/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/demo/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -j1 export-headers gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -j1 flag-stamps gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util TMPL=util -j1 all gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/random_gen.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/utf8.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_cityhash.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_farmhash.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bytesrc.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strbuffer.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itree.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/smalldns.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_old.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ddump_viewer.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/strsearch.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/logrotate.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/format_guess.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ascii85.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/md5.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/file_obsolete.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/unicode.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/dictionary_util.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_nonstop.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sgml_entity.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/static_set.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/transmissionrw.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/miscmath.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/mutex_pool.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/ncbi_cache.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/line_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_exception.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/uttp.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/multi_writer.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/itransaction.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/thread_pool_ctrl.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/scheduler.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/distribution.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/rangelist.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/util_misc.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/histogram_binning.cpp. Updating dependency information for 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/Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/random_gen.cpp -o random_gen.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 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-DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_cityhash.cpp -o checksum_cityhash.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/checksum_farmhash.cpp -o checksum_farmhash.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bytesrc.cpp -o bytesrc.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register 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checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o crc32_sse.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxutil.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxutil.a /bin/ln -f .xutil.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xutil.dep gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -C regexp -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/regexp TMPL=regexp -j1 mark-as-disabled gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/regexp' /opt/pkg/bin/gmake -C xregexp -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/arg_regexp.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/mask_regexp.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp -o convert_dates_iso8601.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o convert_dates_iso8601.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxregexp.a /bin/ln -f .xregexp.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xregexp.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp_template_tester.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -C compress -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress' /opt/pkg/bin/gmake -C bzip2 -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /opt/pkg/bin/gmake -C zlib -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/zlib TMPL=zlib -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/zlib' /opt/pkg/bin/gmake -C api -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api TMPL=compress -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/compress.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/lzo.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zstd.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_zip.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/compress.cpp -o compress.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream.cpp -o stream.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/zstd.cpp -o zstd.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/tar.cpp -o tar.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive.cpp -o archive.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o lzo.o zlib.o zstd.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcompress.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/compress' /opt/pkg/bin/gmake -C diff -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/diff' /opt/pkg/bin/gmake -C image -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/image' /opt/pkg/bin/gmake -C tables -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables TMPL=tables -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/raw_scoremat.c. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.tables.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables/test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -C sequtil -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil TMPL=sequtil -j1 all In file included from /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp:37: /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.hpp:289:30: warning: private field 'm_GapsOK' is not used [-Wunused-private-field] const bool m_GapsOK; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_manip.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_shared.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.sequtil.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -C bitset -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/bitset/demo/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/test' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/bitset' /opt/pkg/bin/gmake -C qparse -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/qparse' /opt/pkg/bin/gmake -C lmdb -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: *** No rule to make target '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LocalLMDB.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdb' /opt/pkg/bin/gmake -C lmdbxx -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx/example.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/util/lmdbxx -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=lmdbxx_sample -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/lmdbxx/example.cpp -o example.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O example.o -L/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxncbi -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o lmdbxx_sample strip lmdbxx_sample /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdbxx_sample /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f lmdbxx_sample /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/lmdbxx_sample gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/test' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/demo' /opt/pkg/bin/gmake -C profile -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile TMPL=utrtprof -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile/rtprofile.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/util/profile/rtprofile.cpp -o rtprofile.o /bin/rm -f libutrtprof.a .libutrtprof.a.stamp ar cr libutrtprof.a rtprofile.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libutrtprof.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libutrtprof.a /bin/ln -f .utrtprof.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.utrtprof.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util/profile' gmake[2]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -C connect -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: *** No rule to make target '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: *** No rule to make target '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connssl -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p mbedtls Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_gnutls.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_mbedtls.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_tls.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aes.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aesni.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/arc4.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/aria.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1parse.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/asn1write.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/base64.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/bignum.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/blowfish.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/camellia.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ccm.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/chacha20.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/chachapoly.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cipher.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cipher_wrap.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/cmac.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/constant_time.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ctr_drbg.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/des.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/dhm.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecdh.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecdsa.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecjpake.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecp.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ecp_curves.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/entropy.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/entropy_poll.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/error.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/gcm.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/havege.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/hkdf.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/hmac_drbg.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md2.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/md4.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mbedtls_md5.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mps_reader.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/mps_trace.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/nist_kw.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/oid.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/padlock.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pem.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pk.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pk_wrap.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs12.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkcs5.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkparse.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/pkwrite.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/platform.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/platform_util.c. 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mbedtls/psa_crypto_aead.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/psa_crypto_cipher.c -o mbedtls/psa_crypto_cipher.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 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/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/x509write_csr.c -o mbedtls/x509write_csr.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/debug.c -o mbedtls/debug.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/net_sockets.c -o mbedtls/net_sockets.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls/ssl_cache.c -o mbedtls/ssl_cache.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 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mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnssl.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnssl.a /bin/ln -f .connssl.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connssl.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=connect -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ansi_ext.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_types.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_priv.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_util.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_buffer.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connector.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connection.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connutil.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ipv6.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_server_info.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_host_info.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_sendmail.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_base64.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lb.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_connector.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_file_connector.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_memory_connector.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_connector.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_version.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_iprange.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_local.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_dispd.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_linkerd.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_namerd.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/parson.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbdns.c. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm.c -o ncbi_lbsm.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsm_ipc.c -o ncbi_lbsm_ipc.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbu/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2757:34: warning: unknown warning group '-Wmaybe-uninitialized', ignored [-Wunknown-warning-option] # pragma GCC diagnostic ignored "-Wmaybe-uninitialized"/* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2762:34: warning: unknown warning group '-Wmaybe-uninitialized', ignored [-Wunknown-warning-option] # pragma GCC diagnostic warning "-Wmaybe-uninitialized"/* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2982:14: warning: variable 'error' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized] (x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/ ^~~~~~~~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:3019:13: note: uninitialized use occurs here if (error == SOCK_EWOULDBLOCK || error == SOCK_EAGAIN) { ^~~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2982:14: note: remove the '&&' if its condition is always true (x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/ ^~~~~~~~~~~~~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c:2973:18: note: initialize the variable 'error' to silence this warning int error; ^ = 0 3 warnings generated. lk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_types.c -o ncbi_types.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core.c -o ncbi_core.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_util.c -o ncbi_util.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbu/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:696:52: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] || SERV_EqualInfo(skip, &svc->info))) { ^~~~~~~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:699:46: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] } else if (SERV_EqualInfo(skip, &svc->info)) ^~~~~~~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:850:32: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] cand[n].cand.info = &svc->info; ^~~~~~~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c:938:38: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] if ((info = SERV_CopyInfoEx(&svc->info, name)) != 0) { ^~~~~~~~~ 4 warnings generated. lk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_version.c -o ncbi_version.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_local.c -o ncbi_local.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_lbsmd.c -o ncbi_lbsmd.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include 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ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_lbsmd.o ncbi_dispd.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnect.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnect.a /bin/ln -f .connect.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connect.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xxconnect -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_socket_cxx.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_core_cxx.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/email_diag_handler.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp. Updating dependency information for 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information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_userhost.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_http_session.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_monkey.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_service_cxx.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_localip_cxx.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_blowfish.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ncbi_usage_report.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connect_misc.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include 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mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xxconnect.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xconnect -j1 all /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(ncbi_monkey.o) has no symbols /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(aria.o) has no symbols /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(cmac.o) has no symbols /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(ecjpake.o) has no symbols /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(havege.o) has no symbols /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(md2.o) has no symbols /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(md4.o) has no symbols /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(memory_buffer_alloc.o) has no symbols /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(mps_reader.o) has no symbols /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(mps_trace.o) has no symbols /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(nist_kw.o) has no symbols /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(padlock.o) has no symbols /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(psa_crypto_se.o) has no symbols /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(pkcs11.o) has no symbols /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(ssl_tls13_keys.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(ncbi_monkey.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(aria.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(cmac.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(ecjpake.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(havege.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(md2.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(md4.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(memory_buffer_alloc.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(mps_reader.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(mps_trace.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(nist_kw.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(padlock.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(psa_crypto_se.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(pkcs11.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxconnect.a(ssl_tls13_keys.o) has no symbols gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_lbsmd.o ncbi_dispd.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnect.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnect.a /bin/ln -f .xconnect.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnect.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: *** No rule to make target '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect TMPL=xthrserv -j1 all /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:47:20: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1215:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS' #define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class) ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp:52:5: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CThreadedServer& m_Server; // NCBI_FAKE_WARNING ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1215:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS' #define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class) ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbimisc.hpp:1209:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server_monitor.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connection_pool.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server.cpp -o server.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xthrserv.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -C services -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=xconnserv -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_main_loop.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_globals.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/srv_connections.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netcache_search.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/util.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o 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-stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnserv.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/neticache_client.cpp. 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/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a /bin/ln -f .ncbi_xcache_netcache.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep /bin/rm -f libncbi_xcache_netcache-dll.dylib .libncbi_xcache_netcache-dll.dylib.stamp /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xcache_netcache-dll.dylib -o libncbi_xcache_netcache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress neticache_client.o -L/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.dylib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache-dll.dylib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.dylib /bin/ln -f .ncbi_xcache_netcache-dll.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/blob_storage_netcache.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xblobstorage_netcache.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services/test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -C ext -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=connext -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_ifconf.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_crypt.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb.c. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_localnet.c. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_ifconf.c -o ncbi_ifconf.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_crypt.c -o ncbi_crypt.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb.c -o ncbi_dblb.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_localnet.c -o ncbi_localnet.o /bin/rm -f libconnext.a .libconnext.a.stamp ar cr libconnext.a ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_localnet.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnext.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnext.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libconnext.a /bin/ln -f .connext.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.connext.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext TMPL=xconnext -j1 all /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp:336:34: warning: taking address of packed member 'status' of class or structure 'SLBSM_HostLoad' may result in an unaligned pointer value [-Waddress-of-packed-member] HINFO_Status(hinfo, &load.status); ^~~~~~~~~~~ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp -o ncbi_dblb_svcmapper.o /bin/rm -f libxconnext.a .libxconnext.a.stamp ar cr libxconnext.a ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_localnet.o ncbi_dblb_svcmapper.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnext.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnext.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxconnext.a /bin/ln -f .xconnext.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xconnext.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext/test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect/test' gmake[2]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -C cgi -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: *** No rule to make target '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: *** No rule to make target '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=cgi -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgi.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgictx.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgir.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbires.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ref_args.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_run.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_util.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_serial.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_session.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_exception.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp_cached.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_entry_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/user_agent.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcgi.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcgi.a /bin/ln -f .xcgi.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcgi.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi TMPL=fcgi -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/fcgi_run.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_XFCGI_EXPORTS -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxfcgi.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xfcgi.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: *** No rule to make target '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi/test' gmake[2]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -C html -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/demo/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -j1 export-headers gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -j1 flag-stamps gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html TMPL=html -j1 all gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/node.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/htmlhelper.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/page.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/pager.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/selection.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/components.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/commentdiag.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/indentstream.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html_exception.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/writer_htmlenc.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/node.cpp -o node.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html.cpp -o html.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/page.cpp -o page.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/pager.cpp -o pager.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/selection.cpp -o selection.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/components.cpp -o components.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/indentstream.cpp -o indentstream.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/html_exception.cpp -o html_exception.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxhtml.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxhtml.a /bin/ln -f .xhtml.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xhtml.dep gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/test' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html/demo' gmake[2]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -C build-system -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system' /opt/pkg/bin/gmake -C helpers -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' /opt/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `flag-stamps'. /opt/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `all'. gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/helpers' /opt/pkg/bin/gmake -C project_tree_builder -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder 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/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG 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-I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc 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/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -Wl,-rpath,/opt/pkg/lib -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -L/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/opt/pkg/lib -lpcre -lm -Wl,-framework,ApplicationServices -lpthread -o project_tree_builder strip project_tree_builder /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/project_tree_builder gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -C msbuild -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[2]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/build-system' /opt/pkg/bin/gmake -C serial -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/soap/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT soap/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=serial -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdata.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdatakey.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeinfo.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectinfo.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectiter.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectio.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeref.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typemap.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/enumerated.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/ptrinfo.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/autoptrinfo.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/continfo.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stltypes.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/memberid.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/memberlist.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/item.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfob.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/member.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/classinfo.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/variant.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choice.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/choiceptr.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/aliasinfo.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistr.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostr.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objcopy.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/iterator.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serial.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/delaybuf.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pack_string.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/exception.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objhook.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objlist.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objstack.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasn.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasn.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasnb.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasnb.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrxml.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrxml.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrjson.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrjson.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serializable.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialobject.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/pathhook.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/rpcbase.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdata.cpp -o hookdata.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /Users/pbulk/build-disk/biology/ncbi-blaIn file included from /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectiter.cpp:35: /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/objectiter.hpp:578:18: warning: private field 'm_VariantIndex' is not used [-Wunused-private-field] TMemberIndex m_VariantIndex; ^ 1 warning generated. st+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectiter.cpp -o objectiter.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objectio.cpp -o objectio.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typeref.cpp -o typeref.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:556:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:651:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:969:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(signed char) ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:970:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned char) ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:971:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(short) ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:972:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned short) ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:973:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(int) ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:974:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned) ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:976:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(long) ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:977:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned long) ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:979:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(Int8) ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:980:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(Uint8) ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1026:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1056:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1092:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1404:52: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &TFunctions::Copy, &TFunctions::Skip); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1449:16: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoCharPtr::CPrimitiveTypeInfoCharPtr' requested here return new CPrimitiveTypeInfoCharPtr(); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1404:52: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &TFunctions::Copy, &TFunctions::Skip); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp:1460:16: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoCharPtr::CPrimitiveTypeInfoCharPtr' requested here return new CPrimitiveTypeInfoCharPtr(); ^ 17 warnings generated. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/typemap.cpp -o typemap.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stdtypes.cpp -o stdtypes.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/enumerated.cpp -o enumerated.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/continfo.cpp -o continfo.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/stltypes.cpp -o stltypes.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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/Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objostrasnb.cpp -o objostrasnb.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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/Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/objistrjson.cpp -o objistrjson.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 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hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xser.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial TMPL=cserial -j1 all /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxcser.a(asntypes.o) has no symbols /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxcser.a(serialasn.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxcser.a(asntypes.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libxcser.a(serialasn.o) has no symbols warning: /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: archive library: libxcser.a the table of contents is empty (no object file members in the library define global symbols) gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/asntypes.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialasn.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 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-I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcser.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxcser.a /bin/ln -f .xcser.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xcser.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -C datatool -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool TMPL=datatool -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool TMPL=datatool -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/datatool.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/type.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/namespace.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/statictype.cpp. Updating dependency information for 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-I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include 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/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdlexer.cpp -o jsdlexer.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/jsdparser.cpp -o jsdparser.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -L/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -Wl,-framework,ApplicationServices -lpthread -o datatool strip datatool /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f datatool /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/test' /opt/pkg/bin/gmake -C soap -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/soap' /opt/pkg/bin/gmake -C grpc_integration -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration/grpc_integration.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/serial/grpc_integration/grpc_integration.cpp -o grpc_integration.o /bin/rm -f libgrpc_integration.a .libgrpc_integration.a.stamp ar cr libgrpc_integration.a grpc_integration.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgrpc_integration.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgrpc_integration.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgrpc_integration.a /bin/ln -f .grpc_integration.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.grpc_integration.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[2]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -C db -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/bdb/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT bdb/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb/Makefile /opt/pkg/bin/gmake -C sqlite -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o /bin/rm -f libsqlitewrapp.a .libsqlitewrapp.a.stamp ar cr libsqlitewrapp.a sqlitewrapp.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsqlitewrapp.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsqlitewrapp.a /bin/ln -f .sqlitewrapp.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.sqlitewrapp.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -C bdb -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db/bdb' gmake[2]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/db' /opt/pkg/bin/gmake -C dbapi -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/simple/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT simple/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/lang_bind/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lang_bind/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -j1 export-headers gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -j1 flag-stamps gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi TMPL=dbapi -j1 all gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/variant.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/variant.cpp -o variant.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-b/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:261:41: warning: 'GetBlobDescriptor' is deprecated [-Wdeprecated-declarations] var.SetBlobDescriptor(m_rs->GetBlobDescriptor()); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:541:5: note: 'GetBlobDescriptor' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp:384:45: warning: 'GetBlobDescriptor' is deprecated [-Wdeprecated-declarations] unique_ptr desc(m_rs->GetBlobDescriptor()); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:541:5: note: 'GetBlobDescriptor' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.cpp:142:19: warning: variable 'total' set but not used [-Wunused-but-set-variable] static size_t total = 0; ^ 1 warning generated. last+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/bui/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp:85:26: warning: 'SendDataCmd' is deprecated [-Wdeprecated-declarations] ->SetCmd(curCmd->SendDataCmd(item_num, datasize, ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:890:5: note: 'SendDataCmd' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp:88:25: warning: 'SendDataCmd' is deprecated [-Wdeprecated-declarations] m_dataCmd = curCmd->SendDataCmd(item_num, datasize, ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/dbapi/driver/public.hpp:890:5: note: 'SendDataCmd' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. ld-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi.dep gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -C driver -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/util/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT util/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ctlib/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ftds100/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ftds-default/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/mysql/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT mysql/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/samples/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT samples/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/handle_stack.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ 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/Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/public.cpp -o public.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/types.cpp -o types.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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-DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/pointer_pot.cpp -o pointer_pot.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/driver_mgr.cpp -o driver_mgr.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp -o dbapi_driver_conn_mgr.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include 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-D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp -o dbapi_svc_mapper.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp -o dbapi_driver_utils.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp -o dbapi_impl_cmd.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp -o dbapi_impl_connection.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp -o dbapi_impl_context.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp -o dbapi_impl_result.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp -o dbapi_driver_conn_params.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp -o dbapi_driver_exception_storage.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.a /bin/ln -f .dbapi_driver.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/rm -f libdbapi_driver-dll.dylib .libdbapi_driver-dll.dylib.stamp /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libdbapi_driver-dll.dylib -o libdbapi_driver-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -L/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.dylib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver-dll.dylib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.dylib /bin/ln -f .dbapi_driver-dll.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -C util -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/util' /opt/pkg/bin/gmake -C ctlib -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /opt/pkg/bin/gmake -C ftds100 -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' /opt/pkg/bin/gmake -C ftds-default -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /opt/pkg/bin/gmake -C mysql -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /opt/pkg/bin/gmake -C odbc -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -j1 mark-as-disabled gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /opt/pkg/bin/gmake -C samples -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -C simple -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/simple' /opt/pkg/bin/gmake -C lang_bind -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi/test' gmake[2]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -C objects -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/Makefile.sources builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/opt/pkg/bin/gmake -j1"; export MAKE; \ ( cd $i && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-j1" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \ -oc omssa -or objects/omssa -odi -od omssa.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m access.asn -M "" -oA \ -oc access -or objects/access -odi -od access.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd access.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ -oc blast -or objects/blast -odi -od blast.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' File blastxml.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blastxml.asn -M "" -oA \ -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m blastxml2.asn -M "" -oA \ -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA \ -oc cdd -or objects/cdd -odi -od cdd.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA \ -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m docsum.asn -M "" -oA \ -oc docsum -or objects/docsum -odi -od docsum.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA \ -oc biotree -or objects/biotree -odi -od biotree.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m entrez2.asn -M "" -oA \ -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA \ -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m featdef.asn -M "" -oA \ -oc featdef -or objects/featdef -odi -od featdef.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m gbseq.asn -M "" -oA \ -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m general.asn -M "" -oA \ -oc general -or objects/general -odi -od general.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m insdseq.asn -M "" -oA \ -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m macro.asn -M "" -oA \ -oc macro -or objects/macro -odi -od macro.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medline -or objects/medline -odi -od medline.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mim.asn -M "" -oA \ -oc mim -or objects/mim -odi -od mim.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ -oc mla -or objects/mla -odi -od mla.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA \ -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA \ -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m objprt.asn -M "" -oA \ -oc objprt -or objects/objprt -odi -od objprt.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA \ -oc proj -or objects/proj -odi -od proj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pub -or objects/pub -odi -od pub.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock/seqblock.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ -oc seq -or objects/seq -odi -od seq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqcode.asn -M "" -oA \ -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ -oc submit -or objects/submit -odi -od submit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m tinyseq.asn -M "" -oA \ -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA \ -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc remap -or objects/remap -odi -od remap.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA \ -oc homologene -or objects/homologene -odi -od homologene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/builWarning: (810.1) No service name provided for CTrackMgrClient d-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA \ -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA \ -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m valerr.asn -M "" -oA \ -oc valerr -or objects/valerr -odi -od valerr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m valid.asn -M "" -oA \ -oc valid -or objects/valid -odi -od valid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m genesbyloc.asn -M "" -oA \ -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -C general -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/unit_test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh general all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general TMPL=general -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general___.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/uoconv.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general__.cpp -o general__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general___.cpp -o general___.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgeneral.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgeneral.a /bin/ln -f .general.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.general.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/test' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -C biblio -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh biblio all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio TMPL=biblio -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio___.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/citation_base.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiblio.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libbiblio.a /bin/ln -f .biblio.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.biblio.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -C medline -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh medline all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline TMPL=medline -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedline.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmedline.a /bin/ln -f .medline.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.medline.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -C pub -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pub all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub TMPL=pub -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpub.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpub.a /bin/ln -f .pub.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pub.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -C seqcode -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqcode all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode TMPL=seqcode -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqcode.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqcode.a /bin/ln -f .seqcode.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqcode.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -C seq -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/unit_test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/Makefile.sources builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/opt/pkg/bin/gmake -j1"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/../$x ; \ (cd $d && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seq all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqblock/seqblock.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq TMPL=seq -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq__.cpp. Updating dependency information for seqalign__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for seqblock___.cpp. Updating dependency information for seqfeat___.cpp. Updating dependency information for seqloc___.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/so_map.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 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-I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/so_map.cpp -o so_map.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seq.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/test' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -C seqset -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqset all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset TMPL=seqset -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset___.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/gb_release_file.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqset.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -C submit -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh submit all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit TMPL=submit -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsubmit.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsubmit.a /bin/ln -f .submit.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.submit.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -C seqedit -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqedit all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit TMPL=seqedit -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqedit.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -C seqsplit -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqsplit all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqsplit.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqsplit.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -C id1 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test/Makefile cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh id1 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1 -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid1.a /bin/ln -f .id1.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id1.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1 TMPL=id1cli -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client_.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1cli.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid1cli.a /bin/ln -f .id1cli.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id1cli.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1/test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -C id2 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh id2 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqsplit/seqsplit.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2 -j1 all In file included from /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp:26: /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] replies = move(ProcessSomeRequests(packet)); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: note: remove std::move call here replies = move(ProcessSomeRequests(packet)); ^~~~~ ~ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2.a /bin/ln -f .id2.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2 TMPL=id2cli -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client_.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2cli.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -C entrez2 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/demo/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh entrez2 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrez2.a /bin/ln -f .entrez2.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrez2.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2cli.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrez2cli.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -C pubmed -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pubmed all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed TMPL=pubmed -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpubmed.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpubmed.a /bin/ln -f .pubmed.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pubmed.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -C medlars -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh medlars all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars TMPL=medlars -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedlars.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmedlars.a /bin/ln -f .medlars.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.medlars.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -C mla -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh mla all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medlars/medlars.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mla -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmla.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmla.a /bin/ln -f .mla.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mla.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla TMPL=mlacli -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client_.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmlacli.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmlacli.a /bin/ln -f .mlacli.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mlacli.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -C proj -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh proj all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj TMPL=proj -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/proj/proj___.cpp -o proj___.o /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libproj.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libproj.a /bin/ln -f .proj.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.proj.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -C scoremat -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh scoremat all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat TMPL=scoremat -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.scoremat.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -C blast -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blast all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=blast -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast___.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/names.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xnetblast.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast TMPL=xnetblastcli -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient_.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblastcli.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xnetblastcli.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -C blastdb -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastdb all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb TMPL=blastdb -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastdb.a /bin/ln -f .blastdb.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastdb.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -C blastxml -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastxml all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml TMPL=blastxml -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastxml.a /bin/ln -f .blastxml.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastxml.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -C blastxml2 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml2.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastxml2.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -C mmdb -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/Makefile.sources builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/opt/pkg/bin/gmake -j1"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2' /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb TMPL=mmdb -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' Updating dependency information for mmdb1__.cpp. Updating dependency information for mmdb2__.cpp. Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb3___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 mmdb1__.cpp -o mmdb1__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 mmdb2__.cpp -o mmdb2__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 mmdb3__.cpp -o mmdb3__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 mmdb1___.cpp -o mmdb1___.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 mmdb2___.cpp -o mmdb2___.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mmdb.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -C cn3d -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh cn3d all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d TMPL=cn3d -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.cn3d.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -C cdd -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh cdd all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd TMPL=cdd -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.cdd.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -C ncbimime -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh ncbimime all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -C pcsubstance -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcsubstance.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcsubstance.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -C pcassay -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcassay all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay TMPL=pcassay -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcassay.a /bin/ln -f .pcassay.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcassay.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -C pcassay2 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh pcassay2 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay2 MODULE_PATH=objects/pcassay2 MODULE_ASN=pcassay2.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m pcassay2.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay2 -or objects/pcassay2 -odi -od pcassay2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay2.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2__.cpp -o pcassay2__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pcassay2/pcassay2___.cpp -o pcassay2___.o /bin/rm -f libpcassay2.a .libpcassay2.a.stamp ar cr libpcassay2.a pcassay2__.o pcassay2___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay2.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay2.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpcassay2.a /bin/ln -f .pcassay2.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.pcassay2.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -C gbseq -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gbseq all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq TMPL=gbseq -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gbseq.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -C insdseq -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh insdseq all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq TMPL=insdseq -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libinsdseq.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libinsdseq.a /bin/ln -f .insdseq.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.insdseq.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -C tinyseq -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh tinyseq all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.tinyseq.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -C biotree -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh biotree all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree TMPL=biotree -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiotree.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libbiotree.a /bin/ln -f .biotree.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.biotree.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -C entrezgene -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/unit_test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test/Makefile cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh entrezgene all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -j1 all In file included from /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp:2: /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/Entrezgene.cpp:216:22: warning: loop variable 'root_comment' creates a copy from type 'const ncbi::CRef' [-Wrange-loop-construct] for ( const auto root_comment : GetComments() ) { ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/Entrezgene.cpp:216:11: note: use reference type 'const ncbi::CRef &' to prevent copying for ( const auto root_comment : GetComments() ) { ^~~~~~~~~~~~~~~~~~~~~~~~~ & 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.entrezgene.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -C omssa -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh omssa all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa TMPL=omssa -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libomssa.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libomssa.a /bin/ln -f .omssa.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.omssa.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -C remap -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh remap all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remap -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap___.cpp -o remap___.o /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libremap.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libremap.a /bin/ln -f .remap.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.remap.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap TMPL=remapcli -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client_.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libremapcli.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libremapcli.a /bin/ln -f .remapcli.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.remapcli.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -C seqtest -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh seqtest all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest TMPL=seqtest -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqtest.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -C taxon1 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh taxon1 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1___.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/utils.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/ctreecont.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon1.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtaxon1.a /bin/ln -f .taxon1.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.taxon1.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/local_taxon.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon1/local_taxon.cpp -o local_taxon.o /bin/rm -f liblocal_taxon.a .liblocal_taxon.a.stamp ar cr liblocal_taxon.a local_taxon.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblocal_taxon.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f liblocal_taxon.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/liblocal_taxon.a /bin/ln -f .local_taxon.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.local_taxon.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -C taxon3 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh taxon3 all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3___.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon3.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtaxon3.a /bin/ln -f .taxon3.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.taxon3.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -C gbproj -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gbproj all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/submit/submit.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj TMPL=gbproj -j1 all In file included from /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp:9: /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable] CProjectItem& item = **it; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbproj.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgbproj.a /bin/ln -f .gbproj.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gbproj.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -C trackmgr -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh trackmgr all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgr.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgr.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrcli.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgrcli.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/tms_exception.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/blast_client.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackset_client.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp -o createremotetrack_client.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp -o switch_context_client.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackset_client.cpp -o trackset_client.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp -o createtrackset_client.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp -o supported_assemblies_client.o /bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o createremotetrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o trackset_client.o createtrackset_client.o supported_assemblies_client.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrgridcli.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a /bin/ln -f .trackmgrgridcli.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -C valerr -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh valerr all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr TMPL=valerr -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalerr.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvalerr.a /bin/ln -f .valerr.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.valerr.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -C valid -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh valid all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid TMPL=valid -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalid.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvalid.a /bin/ln -f .valid.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.valid.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -C access -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh access all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access TMPL=access -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access__.cpp -o access__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libaccess.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libaccess.a /bin/ln -f .access.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.access.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -C docsum -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh docsum all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum TMPL=docsum -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.docsum.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -C featdef -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh featdef all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef TMPL=featdef -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libfeatdef.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libfeatdef.a /bin/ln -f .featdef.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.featdef.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -C genomecoll -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh genome_collection all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all Waiting for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/make_asn.lock. Acquired /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/make_asn.lock for PID 54414 (make_asn) /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenome_collection.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.genome_collection.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j1 all /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:97:5: warning: 'SetRetryLimit' is deprecated [-Wdeprecated-declarations] SetRetryLimit(40); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/serial/rpcbase_impl.hpp:91:5: note: 'SetRetryLimit' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: warning: adding 'std::basic_string::size_type' (aka 'unsigned long') to a string does not append to the string [-Wstring-plus-int] NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:708:45: note: expanded from macro 'NCBI_THROW' message)); \ ^~~~~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:697:51: note: expanded from macro 'NCBI_EXCEPTION' exception_class, err_code, message) ^~~~~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:685:63: note: expanded from macro 'NCBI_EXCEPTION_VAR' NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) ^~~~~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:681:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX' prev_exception_ptr, exception_class::err_code, (message)) ^~~~~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:689:12: note: expanded from macro 'NCBI_EXCEPTION_THROW' throw (exception_var) ^~~~~~~~~~~~~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: note: use array indexing to silence this warning NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size()); ^ & [ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:708:45: note: expanded from macro 'NCBI_THROW' message)); \ ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:697:51: note: expanded from macro 'NCBI_EXCEPTION' exception_class, err_code, message) ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:685:63: note: expanded from macro 'NCBI_EXCEPTION_VAR' NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:681:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX' prev_exception_ptr, exception_class::err_code, (message)) ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbiexpt.hpp:689:12: note: expanded from macro 'NCBI_EXCEPTION_THROW' throw (exception_var) ^ 1 warning generated. ++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o /bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgencoll_client.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgencoll_client.a /bin/ln -f .gencoll_client.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gencoll_client.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -C gc_cli -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=gc_cli -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp -o gc_cli.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O gc_cli.o -L/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgencoll_client-static -lgenome_collection-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lsqlitewrapp-static -lxser-static -lxconnect-static -lxcompress-static -lxutil-static -lxncbi-static -lsqlite3 -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o gc_cli strip gc_cli /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gc_cli /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f gc_cli /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/gc_cli gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -C homologene -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh homologene all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene TMPL=homologene -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.homologene.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -C mim -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh mim all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim TMPL=mim -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.mim.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -C objprt -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh objprt all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt TMPL=objprt -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjprt.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libobjprt.a /bin/ln -f .objprt.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.objprt.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -C variation -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh variation all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation TMPL=variation -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.variation.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -C macro -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/unit_test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh macro all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro TMPL=macro -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/macro/macro___.cpp -o macro___.o /bin/rm -f libmacro.a .libmacro.a.stamp ar cr libmacro.a macro__.o macro___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libmacro.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libmacro.a /bin/ln -f .macro.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.macro.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -C genesbyloc -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenesbyloc.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.genesbyloc.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -C coords -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh objcoords all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m objcoords.asn -M "" -oA \ -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords TMPL=objcoords -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjcoords.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libobjcoords.a /bin/ln -f .objcoords.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.objcoords.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -C varrep -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh varrep all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m varrep.asn -M "" -oA \ -oc varrep -or objects/varrep -odi -od varrep.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep TMPL=varrep -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o /bin/rm -f libvarrep.a .libvarrep.a.stamp ar cr libvarrep.a varrep__.o varrep___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libvarrep.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libvarrep.a /bin/ln -f .varrep.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.varrep.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -C variation_libs -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs' /opt/pkg/bin/gmake -C dbsnp -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' /opt/pkg/bin/gmake -C search_by_rsid -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh search_by_rsid all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/trackmgr/trackmgr.asn /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \ -oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \ datatool: 2.23.2 gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j1 all gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp -o search_by_rsid__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp -o search_by_rsid___.o /bin/rm -f libsearchbyrsid.a .libsearchbyrsid.a.stamp ar cr libsearchbyrsid.a search_by_rsid__.o search_by_rsid___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsearchbyrsid.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libsearchbyrsid.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libsearchbyrsid.a /bin/ln -f .searchbyrsid.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.searchbyrsid.dep gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -C tooltip_service -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh dbsnp_tooltip_service all /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' DYLD_LIBRARY_PATH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ \ -opm /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \ -oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \ datatool: 2.23.2 gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j1 export-headers gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j1 all gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp -o dbsnp_tooltip_service__.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp -o dbsnp_tooltip_service___.o /bin/rm -f libdbsnp_tooltip_service.a .libdbsnp_tooltip_service.a.stamp ar cr libdbsnp_tooltip_service.a dbsnp_tooltip_service__.o dbsnp_tooltip_service___.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_tooltip_service.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_tooltip_service.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbsnp_tooltip_service.a /bin/ln -f .dbsnp_tooltip_service.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbsnp_tooltip_service.dep gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/variation_libs' /opt/pkg/bin/gmake -C dbsnp -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp' /opt/pkg/bin/gmake -C primary_track -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test/Makefile cd /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track && /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/new_module.sh --protobuf dbsnp all grep: /grpc_cpp_plugin: No such file or directory Warning: Skipping code generation for dbsnp.proto because protoc is unavailable here. File dbsnp.module not found. Using defaults... /opt/pkg/bin/gmake -j1 -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.protobuf MODULE=dbsnp MODULE_PATH=objects/dbsnp/primary_track MODULE_ASN=dbsnp.proto MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++ builddir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build DATATOOL=/no/need/for/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j1 all /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libdbsnp_ptis.a(dbsnp.pb.wrapper.o) has no symbols /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libdbsnp_ptis.a(dbsnp.grpc.pb.wrapper.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libdbsnp_ptis.a(dbsnp.pb.wrapper.o) has no symbols /Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libdbsnp_ptis.a(dbsnp.grpc.pb.wrapper.o) has no symbols gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc -o dbsnp.pb.wrapper.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc -o dbsnp.grpc.pb.wrapper.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp -o snpptis.o /bin/rm -f libdbsnp_ptis.a .libdbsnp_ptis.a.stamp ar cr libdbsnp_ptis.a dbsnp.pb.wrapper.o dbsnp.grpc.pb.wrapper.o snpptis.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_ptis.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_ptis.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbsnp_ptis.a /bin/ln -f .dbsnp_ptis.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.dbsnp_ptis.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects/dbsnp' gmake[2]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -C objmgr -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -j1 export-headers gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -j1 flag-stamps gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr TMPL=objmgr -j1 all gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_setters.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_info.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_info.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/table_field.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_switch.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/snp_annot_info.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_types_ci.cpp. Updating 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/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seqdesc_ci.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_split_info.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_chunk_info.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_ci.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_type_index.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_mapper.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_mapper.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_collector.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_loader_factory.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/mapped_feat.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_feat_handle.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_graph_handle.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_align_handle.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_assigner.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/scope_transaction_impl.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_commands_impl.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_edit_commands.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_edit_commands.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp. Updating dependency information for 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/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_id_sort.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/table_field.cpp -o table_field.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object.cpp -o annot_object.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info.cpp -o tse_info.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/in/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:996:24: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] tse_set2 = move(m_Loader->GetRecords(idh, choice)); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:996:24: note: remove std::move call here tse_set2 = move(m_Loader->GetRecords(idh, choice)); ^~~~~ ~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1094:23: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] tse_set = move(m_Loader->GetOrphanAnnotRecordsNA(ids, sel, processed_nas)); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1094:23: note: remove std::move call here tse_set = move(m_Loader->GetOrphanAnnotRecordsNA(ids, sel, processed_nas)); ^~~~~ ~ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1152:24: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] tse_set2 = move(m_Loader->GetExternalAnnotRecordsNA(bioseq, sel, processed_nas)); ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp:1152:24: note: remove std::move call here tse_set2 = move(m_Loader->GetExternalAnnotRecordsNA(bioseq, sel, processed_nas)); ^~~~~ ~ 3 warnings generated. clude -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/data_source.cpp -o data_source.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/priority.cpp -o priority.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 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/Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt//Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_vector.cpp:835:13: warning: variable 'dst_pos' set but not used [-Wunused-but-set-variable] TSeqPos dst_pos = 0; ^ 1 warning generated. pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/handle_range.cpp -o handle_range.o 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-D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split_parser.cpp -o split_parser.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjmgr.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjmgr.dep gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/test' /opt/pkg/bin/gmake -C util -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/unit_test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/unit_test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util TMPL=util -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seqtitle.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/obj_sniff.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_align_util.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_trimmer.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature_edit.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_options.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/weight.cpp -o weight.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature.cpp -o feature.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/indexer.cpp -o indexer.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-b/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp:1114:13: warning: unused function 's_IsValidAccession' [-Wunused-function] static bool s_IsValidAccession(const string& acc) ^ 1 warning generated. /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:308:14: warning: variable 'used_gene' set but not used [-Wunused-but-set-variable] bool used_gene = false; ^ 1 warning generated. last+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/objutil.cpp -o objutil.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef.cpp -o autodef.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DN/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:1033:10: warning: unused variable 'added' [-Wunused-variable] bool added = false, rval = false; ^ 1 warning generated. /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp:222:58: warning: unused variable 'mod_it_other' [-Wunused-variable] CAutoDefSourceDescription::TModifierVector::iterator mod_it_other; ^ 1 warning generated. CBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjutil.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjutil.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -C split -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split TMPL=id2_split -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_blob.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/id_range.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/object_splitinfo.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/asn_sizer.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/annot_piece.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/chunk_info.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/size.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_exceptions.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/id_range.cpp -o id_range.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/size.cpp -o size.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.a .libid2_split.a.stamp ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2_split.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libid2_split.a /bin/ln -f .id2_split.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.id2_split.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[2]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -C objtools -j1 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/unit_test_util/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/unit_test_util/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel 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/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lds2/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cddalignview/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cddalignview/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/cddalignview/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cddalignview/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/cddalignview/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating 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/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT uudutil/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/uudutil/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/variation/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/variation/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/variation/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT variation/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/variation/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/writers/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/writers/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/writers/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT writers/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/writers/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/import/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/import/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/import/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT import/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/import/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/flatfile/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/flatfile/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/flatfile/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT flatfile/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/flatfile/Makefile /opt/pkg/bin/gmake -C logging -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -j1 export-headers gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -j1 flag-stamps gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging TMPL=logging -j1 all gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/message.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/listener.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/message.cpp -o message.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/logging/listener.cpp -o listener.o /bin/rm -f libxlogging.a .libxlogging.a.stamp ar cr libxlogging.a message.o listener.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxlogging.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxlogging.a /bin/ln -f .xlogging.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xlogging.dep gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -C unit_test_util -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/unit_test_util' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/unit_test_util' /opt/pkg/bin/gmake -C readers -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/app/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT app/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/unit_test/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjread -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_listener.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message_handler.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/read_util.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/format_guess_ex.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/seqid_validate.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/acc_pattern.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_read.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_util.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/cigar.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formats.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/alnread.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_errors.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_error_reporter.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_formatguess.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_util.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/getfeature.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/track_data.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_data.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/microarray_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/phrap.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_base.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/readfeat.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/rm_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/wiggle_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff3_location_merger.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gtf_location_merger.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff_base_columns.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_data.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gvf_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/vcf_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_standard.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_custom.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_column_data.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/best_feat_finder.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_exception.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_converter.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_error.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_to_enum.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/message_listener.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/line_error.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/reader_message.cpp -o reader_message.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_reader.cpp -o psl_reader.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.1In file included from /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.cpp:40: /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/psl_data.hpp:88:28: warning: private field 'mpEL' is not used [-Wunused-private-field] CReaderMessageHandler* mpEL; ^ 1 warning generated. 4.1+-src/c++/src/objtools/readers/psl_data.cpp -o psl_data.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql.cpp -o bed_autosql.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_standard.cpp -o bed_autosql_standard.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_autosql_custom.cpp -o bed_autosql_custom.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/bed_column_data.cpp -o bed_column_data.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpasc/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp:185:10: warning: private field 'm_HasSetTaxid' is not used [-Wunused-private-field] bool m_HasSetTaxid = false; ^ 1 warning generated. al-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp -o struct_cmt_reader.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_reader.cpp -o mod_reader.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_error.cpp -o mod_error.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/descr_mod_apply.cpp -o descr_mod_apply.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/feature_mod_apply.cpp -o feature_mod_apply.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/mod_to_enum.cpp -o mod_to_enum.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.a .libxobjread.a.stamp ar cr libxobjread.a reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_reader.o gtf_reader.o gff3_location_merger.o gtf_location_merger.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o bed_reader.o bed_autosql.o bed_autosql_standard.o bed_autosql_custom.o bed_column_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjread.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjread.a /bin/ln -f .xobjread.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjread.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers TMPL=xobjreadex -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/glimmer_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_builtin.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_config.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_database.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_scope.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/glimmer_reader.cpp -o glimmer_reader.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper.cpp -o idmapper.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_builtin.cpp -o idmapper_builtin.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_config.cpp -o idmapper_config.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_database.cpp -o idmapper_database.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp -o idmapper_gcassembly.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/idmapper_scope.cpp -o idmapper_scope.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp -o source_mod_parser_wrapper.o /bin/rm -f libxobjreadex.a .libxobjreadex.a.stamp ar cr libxobjreadex.a glimmer_reader.o idmapper.o idmapper_builtin.o idmapper_config.o idmapper_database.o idmapper_gcassembly.o idmapper_scope.o source_mod_parser_wrapper.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjreadex.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjreadex.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libxobjreadex.a /bin/ln -f .xobjreadex.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.xobjreadex.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -C app -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/app' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/app' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/test' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -C blast -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT gene_info_writer/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer/Makefile /opt/pkg/bin/gmake -C seqdb_reader -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_seqdb.log.new: No such file or directory. /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_S/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2998:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] TIndx map_end = 0; ^ 1 warning generated. AFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:972:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] int found_short(-1); ^ 1 warning generated. D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.1In file included from /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:34: /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:173:17: warning: private field 'm_FileType' is not used [-Wunused-private-field] ELMDBFileType m_FileType; ^ 1 warning generated. 1 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqdb.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libseqdb.a /bin/ln -f .seqdb.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.seqdb.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -j1 all /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:316:15: warning: private field 'm_MaxLength' is not used [-Wunused-private-field] const int m_MaxLength; ^ 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seqdb_demo.o -L/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o seqdb_demo strip seqdb_demo /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_demo /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seqdb_demo gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -j1 all /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:9: warning: 'GetMemoryUsage' is deprecated [-Wdeprecated-declarations] if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) { ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/corelib/ncbi_system.hpp:510:1: note: 'GetMemoryUsage' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seqdb_perf.o -L/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o seqdb_perf strip seqdb_perf /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_perf /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/seqdb_perf gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -C seqdb_writer -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseM/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:1354:9: warning: variable 'offset_pairs_count' set but not used [-Wunused-but-set-variable] int offset_pairs_count = 0; ^ 1 warning generated. T/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o /bin/rm -f libwritedb.a .libwritedb.a.stamp ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libwritedb.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libwritedb.a /bin/ln -f .writedb.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.writedb.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -C gene_info_reader -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libgene_info.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgene_info.a /bin/ln -f .gene_info.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.gene_info.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -C demo -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -j1 flag-stamps gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -j1 all gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O gene_info_reader_app.o -L/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o gene_info_reader strip gene_info_reader /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin /bin/ln -f gene_info_reader /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/bin/gene_info_reader gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -C gene_info_writer -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' /opt/pkg/bin/gmake -C services -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services TMPL=blast_services -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services/blast_services.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast_services.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblast_services.a /bin/ln -f .blast_services.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blast_services.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -C blastdb_format -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb_format.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.blastdb_format.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -C unit_test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/blast' /opt/pkg/bin/gmake -C lds2 -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/lds2' /opt/pkg/bin/gmake -C pubseq_gateway -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cassandra/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT protobuf/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cache/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT ipg/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg/Makefile /opt/pkg/bin/gmake -C cassandra -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra' /opt/pkg/bin/gmake -C client -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j1 export-headers gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j1 flag-stamps gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j1 all gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp. Updating dependency information for /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp. /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp -o psg_client.o /Users/pbulk/build-disk/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/inc -I/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/include -DNCBI_BUILD_SESSION_ID=ABAB2557-35BA-479B-AA80-85E8581853E0 /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp -o psg_client_transport.o /bin/rm -f libpsg_client.a .libpsg_client.a.stamp ar cr libpsg_client.a psg_client.o psg_client_transport.o /opt/pkg/bin/mksh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib /bin/ln -f libpsg_client.a /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/lib/libpsg_client.a /bin/ln -f .psg_client.dep /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/.psg_client.dep gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -C test -j1 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: *** No rule to make target '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: *** No rule to make target '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements gmake[5]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -C protobuf -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf' /opt/pkg/bin/gmake -C cache -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache' /opt/pkg/bin/gmake -C ipg -j1 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg' gmake[4]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg' gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' /opt/pkg/bin/gmake -C data_loaders -j1 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders' /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT lds2/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT patcher/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT asn_cache/Makefile config.status: creating /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache/Makefile /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in` test -f /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /bin/cp -p /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT cdd/Makefile /Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/scripts/common/impl/update_configurable.sh: line 72: 37688 Bus error: 10 $build_root/status/config.status gmake[3]: *** [/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.configurables.real:40: cdd/Makefile] Error 138 gmake[3]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[2]: *** [/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 gmake[2]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build/objtools' gmake[1]: *** [/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 gmake[1]: Leaving directory '/Users/pbulk/build-disk/biology/ncbi-blast+/work/ncbi-blast-2.14.1+-src/c++/ReleaseMT/build' gmake: *** [Makefile:24: all] Error 2 *** Error code 2 Stop. bmake[1]: stopped in /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-x86_64/biology/ncbi-blast+ *** Error code 1 Stop. bmake: stopped in /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-x86_64/biology/ncbi-blast+